mRNA_H-paniculata_contig19187.4823.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19187.4823.1
Unique NamemRNA_H-paniculata_contig19187.4823.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A6H5KTL2_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.150e-27
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYTVR 183
            VGIS LVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGE L DLRDFEPVLFVDSLLGY+VR
Sbjct:  310 VGISALVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGESLYDLRDFEPVLFVDSLLGYSVR 370
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: D7FVJ7_ECTSI (PFtsY, plastid signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 2.100e-25
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYT 177
            VGIS LVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGE L DLRDFEPVLFVDSLLGY+
Sbjct:  396 VGISALVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGESLYDLRDFEPVLFVDSLLGYS 454
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A835ZC86_9STRA (PFtsY, plastid signal recognition particle receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC86_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.910e-23
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYTVRT 186
            VG+SGL VTKLDGTAR GFVVSIV DLGVPVKLIGVGEGL DLRDF+  LFVD+LLGY+  T
Sbjct:  308 VGVSGLAVTKLDGTARAGFVVSIVRDLGVPVKLIGVGEGLTDLRDFDAELFVDALLGYSAET 369
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A1X6P5F8_PORUM (SRP54 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5F8_PORUM)

HSP 1 Score: 92.8 bits (229), Expect = 3.870e-22
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLG 171
            VG+SGLVVTKLDGTAR GFVVS+V +LG+PVKLIGVGE ++DLRDF+PVLFV+ L+G
Sbjct:  137 VGVSGLVVTKLDGTARAGFVVSVVDELGLPVKLIGVGESVDDLRDFDPVLFVEGLVG 193
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: K8Z941_NANGC (Fused signal recognition particle receptor n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z941_NANGC)

HSP 1 Score: 95.1 bits (235), Expect = 8.730e-22
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 174
            VGI+GLV+TKLDGTARGG VVSIV D+GVPVKLIGVGEG++DLRDF P  FVD+LLGY
Sbjct:  277 VGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGY 334
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A4D9DHK9_9STRA (SRP54 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHK9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.070e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 174
            VGI+GLV+TKLDGTARGG VVSIV D+GVPVKLIGVGEG++DLRDF P  FVD+LLGY
Sbjct:  377 VGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGY 434
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: W7U0S2_9STRA (Signal recognition particle-docking protein FtsY n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0S2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.360e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 174
            VGI+GLV+TKLDGTARGG VVSIV D+GVPVKLIGVGEG++DLRDF P  FVD+LLGY
Sbjct:  377 VGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGY 434
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A7S2FBA6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBA6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.530e-21
Identity = 39/58 (67.24%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 174
            VG+SG+++TKLDGTAR G+VV +  DLG+PVKLIGVGE ++DL+DF+P  FVD+LLGY
Sbjct:   30 VGVSGVIITKLDGTARAGYVVGMTRDLGLPVKLIGVGEKIDDLQDFDPPAFVDALLGY 87
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: A0A7R9YFI8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFI8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.930e-20
Identity = 41/58 (70.69%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGY 174
            VG++G+VVTKLDGTARGGFV+S V +L +PVKL+GVGEG++DLRDF+   FVD+LLGY
Sbjct:  123 VGLTGMVVTKLDGTARGGFVISTVRELKLPVKLVGVGEGIDDLRDFDAPAFVDALLGY 180
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BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Match: F0YKD1_AURAN (SRP54 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKD1_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 4.570e-19
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVLFVDSLLGYTVRT 186
            VG+SGL VTKLDGTAR GFVVS+V DLG+PVKL+GVGE L+DLRDF+   F+DSLL    R+
Sbjct:  297 VGVSGLAVTKLDGTARAGFVVSVVEDLGIPVKLVGVGEALDDLRDFDVDAFLDSLLDVDARS 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19187.4823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL2_9PHAE3.150e-2793.44SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVJ7_ECTSI2.100e-2593.22PFtsY, plastid signal recognition particle recepto... [more]
A0A835ZC86_9STRA2.910e-2380.65PFtsY, plastid signal recognition particle recepto... [more]
A0A1X6P5F8_PORUM3.870e-2277.19SRP54 domain-containing protein n=1 Tax=Porphyra u... [more]
K8Z941_NANGC8.730e-2281.03Fused signal recognition particle receptor n=1 Tax... [more]
A0A4D9DHK9_9STRA2.070e-2181.03SRP54 domain-containing protein n=1 Tax=Nannochlor... [more]
W7U0S2_9STRA2.360e-2181.03Signal recognition particle-docking protein FtsY n... [more]
A0A7S2FBA6_9STRA9.530e-2167.24Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7R9YFI8_9STRA7.930e-2070.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YKD1_AURAN4.570e-1969.35SRP54 domain-containing protein n=1 Tax=Aureococcu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19187contigH-paniculata_contig19187:254..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue3.1e-21
Seed eggNOG ortholog2880.D7FVJ7
KEGG koko:K03110
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.5384707-CDS-H-paniculata_contig19187:253..4391622929466.5384707-CDS-H-paniculata_contig19187:253..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19187 254..439 +
1691480873.8649101-CDS-H-paniculata_contig19187:253..4391691480873.8649101-CDS-H-paniculata_contig19187:253..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19187 254..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19187.4823.1prot_H-paniculata_contig19187.4823.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19187 254..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19187.4823.1

>prot_H-paniculata_contig19187.4823.1 ID=prot_H-paniculata_contig19187.4823.1|Name=mRNA_H-paniculata_contig19187.4823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
VGISGLVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGEGLNDLRDFEPVL
FVDSLLGYTVRT
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mRNA from alignment at H-paniculata_contig19187:254..439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19187.4823.1 ID=mRNA_H-paniculata_contig19187.4823.1|Name=mRNA_H-paniculata_contig19187.4823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig19187:254..439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGATATCGGGACTTGTAGTGACAAAGCTCGACGGCACGGCACGCGG
AGGGTTCGTGGTGAGCATCGTGAGCGATCTGGGCGTGCCCGTCAAACTCA
TCGGAGTCGGTGAAGGCCTCAACGATCTTCGAGATTTCGAACCGGTTCTG
TTTGTCGATTCACTACTCGGGTACACGGTACGTACG
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Coding sequence (CDS) from alignment at H-paniculata_contig19187:254..439+

>mRNA_H-paniculata_contig19187.4823.1 ID=mRNA_H-paniculata_contig19187.4823.1|Name=mRNA_H-paniculata_contig19187.4823.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig19187:254..439+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGGATATCGGGACTTGTAGTGACAAAGCTCGACGGCACGGCACGCGG
AGGGTTCGTGGTGAGCATCGTGAGCGATCTGGGCGTGCCCGTCAAACTCA
TCGGAGTCGGTGAAGGCCTCAACGATCTTCGAGATTTCGAACCGGTTCTG
TTTGTCGATTCACTACTCGGGTACACGGTACGTACGGTGGGGATATCGGG
ACTTGTAGTGACAAAGCTCGACGGCACGGCACGCGGAGGGTTCGTGGTGA
GCATCGTGAGCGATCTGGGCGTGCCCGTCAAACTCATCGGAGTCGGTGAA
GGCCTCAACGATCTTCGAGATTTCGAACCGGTTCTGTTTGTCGATTCACT
ACTCGGGTACACGGTACGTACG
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