mRNA_H-paniculata_contig19183.4821.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19183.4821.1
Unique NamemRNA_H-paniculata_contig19183.4821.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19183.4821.1 vs. uniprot
Match: UPI00036067A0 (SCP2 sterol-binding domain-containing protein n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI00036067A0)

HSP 1 Score: 53.9 bits (128), Expect = 3.820e-6
Identity = 32/96 (33.33%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   82 ISDELLGKISFETT-GSVIRFLVGSDVRRVCRIVDIRGAGAVSVMEEDRKMKVDATLETSHEIFALLCDGKLKPELAFMTGRLNVTGDLVRVMRLG 366
            I+DE+ G++   +   ++I+F  G D      +V I G  + +V++ +   + D T++T+ E F  + +G L P++AFMTG+L V GD+   M+LG
Sbjct:    6 ITDEIRGRVGAHSPIAAIIKFDFGDD-----GVVRIDGKSSPTVVD-NADTEADCTVKTTMENFIKIAEGDLNPQMAFMTGKLRVEGDMSLAMQLG 95
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BLAST of mRNA_H-paniculata_contig19183.4821.1 vs. uniprot
Match: A0A1G6XX76_9PROT (Putative sterol carrier protein n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1G6XX76_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 1.020e-5
Identity = 31/96 (32.29%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   82 ISDELLGKI-SFETTGSVIRFLVGSDVRRVCRIVDIRGAGAVSVMEEDRKMKVDATLETSHEIFALLCDGKLKPELAFMTGRLNVTGDLVRVMRLG 366
            I++E+ G++ S     ++I+F  G D      +V I G  + SV++ +   + D T++ + + F  + +G L P++AFMTG+L V GD+   M+LG
Sbjct:    6 ITEEIRGRVGSHSPLAAIIKFDFGDD-----GVVRIDGKASPSVVDNEDS-EADCTVKVTMDNFVQIAEGDLNPQMAFMTGKLRVEGDMSLAMQLG 95
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BLAST of mRNA_H-paniculata_contig19183.4821.1 vs. uniprot
Match: A0A836FML3_9HYME (HSDL2 protein (Fragment) n=1 Tax=Acromyrmex heyeri TaxID=230685 RepID=A0A836FML3_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 2.410e-5
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:   70 LFNVISDELLGKISFETTGSVIRFLVGSDVRRVCRIVDIRGAGAVSVMEEDRKMKVDATLETSHEIFALLCDGKLKPELAFMTGRLNVTGDLVRVMRL 363
            LFNVI+  L  ++  + TG++ +F V      V  +    G GA    E  +    DATL    E F  +  GKLKP  AFMTG+LN++G++ + M+L
Sbjct:   36 LFNVINANLSSEL-VDKTGAIYQFNVKGKESGVWFLDLKNGKGATGKGEPSQP--ADATLTMDSENFFAMFSGKLKPVSAFMTGKLNISGNMQKAMKL 130
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BLAST of mRNA_H-paniculata_contig19183.4821.1 vs. uniprot
Match: A0A158NKP0_ATTCE (SCP2 domain-containing protein n=12 Tax=Attini TaxID=143999 RepID=A0A158NKP0_ATTCE)

HSP 1 Score: 54.3 bits (129), Expect = 4.120e-5
Identity = 38/106 (35.85%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:   46 EPEERTRELFNVISDELLGKISFETTGSVIRFLVGSDVRRVCRIVDIRGAGAVSVMEEDRKMKVDATLETSHEIFALLCDGKLKPELAFMTGRLNVTGDLVRVMRL 363
            E   R   LFNVI+  L  ++  + TG++ +F V      V  +    G GA    E  +    DATL    E F  +  GKLKP  AFMTG+LN++G++ + M+L
Sbjct:  291 EETGRLAHLFNVINANLSSEL-VDKTGAIYQFNVKGKESGVWFLDLKNGKGATGKGEPSQP--ADATLTMDSENFFAMFSGKLKPVSAFMTGKLNISGNMQKAMKL 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19183.4821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00036067A03.820e-633.33SCP2 sterol-binding domain-containing protein n=1 ... [more]
A0A1G6XX76_9PROT1.020e-532.29Putative sterol carrier protein n=5 Tax=Alphaprote... [more]
A0A836FML3_9HYME2.410e-536.73HSDL2 protein (Fragment) n=1 Tax=Acromyrmex heyeri... [more]
A0A158NKP0_ATTCE4.120e-535.85SCP2 domain-containing protein n=12 Tax=Attini Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19183contigH-paniculata_contig19183:1728..4868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size651
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19183.4821.1prot_H-paniculata_contig19183.4821.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19183 1767..4787 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.3106046-UTR-H-paniculata_contig19183:1727..17661622929466.3106046-UTR-H-paniculata_contig19183:1727..1766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19183 1728..1766 +
1691480873.7801943-UTR-H-paniculata_contig19183:1727..17661691480873.7801943-UTR-H-paniculata_contig19183:1727..1766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19183 1728..1766 +
1622929466.3664634-UTR-H-paniculata_contig19183:4787..48681622929466.3664634-UTR-H-paniculata_contig19183:4787..4868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19183 4788..4868 +
1691480873.81675-UTR-H-paniculata_contig19183:4787..48681691480873.81675-UTR-H-paniculata_contig19183:4787..4868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19183 4788..4868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.3248794-CDS-H-paniculata_contig19183:1766..18471622929466.3248794-CDS-H-paniculata_contig19183:1766..1847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19183 1767..1847 +
1691480873.7936146-CDS-H-paniculata_contig19183:1766..18471691480873.7936146-CDS-H-paniculata_contig19183:1766..1847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19183 1767..1847 +
1622929466.3384225-CDS-H-paniculata_contig19183:3459..35731622929466.3384225-CDS-H-paniculata_contig19183:3459..3573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19183 3460..3573 +
1691480873.8015509-CDS-H-paniculata_contig19183:3459..35731691480873.8015509-CDS-H-paniculata_contig19183:3459..3573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19183 3460..3573 +
1622929466.3548174-CDS-H-paniculata_contig19183:4451..47871622929466.3548174-CDS-H-paniculata_contig19183:4451..4787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19183 4452..4787 +
1691480873.8093748-CDS-H-paniculata_contig19183:4451..47871691480873.8093748-CDS-H-paniculata_contig19183:4451..4787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19183 4452..4787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19183.4821.1

>prot_H-paniculata_contig19183.4821.1 ID=prot_H-paniculata_contig19183.4821.1|Name=mRNA_H-paniculata_contig19183.4821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MGEPEERTRELFNVISDELLGKISFETTGSVIRFLVGSDVRRVCRIVDIR
GAGAVSVMEEDRKMKVDATLETSHEIFALLCDGKLKPELAFMTGRLNVTG
DLVRVMRLGPHLFNIFRQRHQRSRSPRELTEDKSATMKKTVDRLQQDHHL
GGSSRGKNVVKGKMPRKSIATPAARL*
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mRNA from alignment at H-paniculata_contig19183:1728..4868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19183.4821.1 ID=mRNA_H-paniculata_contig19183.4821.1|Name=mRNA_H-paniculata_contig19183.4821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3141bp|location=Sequence derived from alignment at H-paniculata_contig19183:1728..4868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTGCGTTGCAGCGGCCGTCGCGAAATAATTTCACAGGATGGGTGAGCC
CGAGGAGAGGACGCGAGAATTGTTCAACGTCATATCTGACGAGTTGCTCG
GGAAAATCAGTTTCGAGACGGTATGGGAAAGGTTTGAGTATTGTTGGATT
TTCCGCTTTTTCTTTTGCGGGCAATCATGTAACGAAATTAATTAAGTAAT
CCACCGTGGTTCACCACGGGCAGTCGATATTTTTGGGTGCGTTGAAATCT
ATCTGTGTAGCTGGTACATTTGAGAAATGCTCACCGTTTTCTTTTACCGC
TGAGGTAGAAGGAGGAGTGGGCACAATCCTTGAACTGAGATATTTAGTGC
GAACGGGTTGTTCGATCGGTTGGAGATACACGCAGTAACAATGTATACTT
TGGAATATGACATTTACGTGATAGGAATCTGTTGAGGGGATCATCAAGTA
TGAAGTATATCCACGTAGCCAATGAGTCGAGCAGGTCTTCGTATTGAGTG
AGTAACAACGCCAGATTAGACGATTGACGGACCAAAATGTGATGTGAGAA
CAAATTAACGAGGGTGTCGTAACACACTGAAGCACATAAAACCCGGCTAA
TTTACTTTTCCCCCATAGCTGTGATGCGCAACCATTGAACCCTGTCACGT
CGTGCACCCCAATGTGTTTTGAGCGACGCGCTTTAAACTGTCTCTCGTCA
TGGCTCCTTTTGTACATGGAACAACCGACGTGAGAGGTTTCGGATCGTTA
TCTGCCTTCTAGGGTTTTGCGTTTCTAGCTACAACTTGTGCAATATATCT
CCTCTCAGTGGTTGCACACGCCGGGGTGGAAAGAAATATATCTCCTCTCA
AAATTTGTGATTGTCTTAGATTTGCCCGTCTATTGAGCCCACCGATTACT
TTTTACTTTAGGTGCAACTGGATGAATGAATCTCGAGATATTCAGATACT
GGGGGCATTTAGAAATACAGCATCTTTTCAAATCTTTGTCACAAGTACTC
TCTACAGCACTCGTGTACATCTGATCAAATCCACTAGCTTGTTGGATGAA
AATGTCGCACGTGTGCCAAGGGTTGGGGTGAATTCTTCGATAACCCTGAA
GACCGCCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGAACTGAGC
ATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTGGGTGCAACCCCCACACT
GCCTACCTGGTTCAGCCGAACCGGGGTGGCTGGCGCCTACCCCGCAGAGG
AATAAATAACTCTGTTCTGTTAAAGGAAATGTAGAAATACTTTGGTAAAA
TACTCGAAGTATGGAAGCATCGGATAGAGGTTTTAGCCTCAGCCTTCCGG
GAGTTAAAAAAAAAAAAAAAAAATCTGAAGACCCGGGCTCGGTTGTGATT
ACGGTCGCCCTAGCACTTGGCACAGACGGTCTGCCGAACTAGTGATGTCA
TGGCGTTGAATGGATATACTCCAAGCAGATTCCTAGAAGGCAGGTGACTA
TTATGTTAGAACTGCAGTCAATGTGACGATGTGATAAATGTGATAAAGTC
AGTATGCAAAGTGCCAGAAGACGAGAGCTCCTAAGTTGCGGCAGGGACCA
TGCCGACTTCACCAGCAGGAGTCCCCATAAAACGCGAGACGAACAGCAAT
CTTATCGCGACGTCATCAGAGCCACGTTTCTCACAATCGATTGTTGTACG
TCTTCTTTTCCATGTCCCCGCGGATCTATCAGACGGGTTCCGTGATTAGA
TTCTTGGTGGGCTCAGATGTTCGCCGGGTTTGTCGGATTGTGGACATCCG
CGGCGCCGGCGCGGTGTCGGTGATGGAGGAAGACCGAAAAATGAAGGTGC
AGAATAGAGTATGTAGGCGGGATTTTTGCCCATACGAAACATGCATATCA
AAACGTCAGATTGTGAAGGCCCTTGTATCCCACCGGTGTCGCCATTTTGA
AGACGGTTATTGTCCAAAGAAGCCTGAGACCACACTGAAGCCTCCGATGA
GTGGCGCTCAAGATATATCCCGCTGTATGAGCAAGGATAGCCAACTTCAG
CACCCGCTGAGGGGCAAGAATTTGGAACGACCGAGGTGGTAGCAGCGCTC
CTTTTGAGAACCCGGCTTCCTGGTCTCGGTCGGCTTTTGTATATGGAGAT
CAGTGGAGTTTGACGGTGGAGACTAGAAGTCTCTTCGCCAGAAGTCCCAT
GTAACAGTTTGGTAACCGAGGATGGATTCGGATCTTCACGTACTGAATGT
GTGCGAAGGAATCTCCGATATGAAGTACTTCTCCGAAGATCCTAGTTTGG
ACAAGATTGACATTATAGACGTATGACTAAAGATATCATAATTGCGAGGT
AATCATTTGGCCAGTATGATCTACTATAGGGTGCACACAAGTTTTCTTCT
GCCGCCAGATGCGCTTATTGTAAATATTACTCATATGTCCGGTGAAGGCT
ACCTGTCGTAATGGATATGTGATATGTTACCCCTCTTTTTTTTTTTAATG
TAATTTTGCTGATAAGTGTACACAACTACAGATTAAAGTTACTTGCATAA
CCTGAACATGGGTACAATGGAGTTATAATGTGAGGTTCAGAGTCATAGTT
CAACTGACTGTAGCACGGTCATTTTACTACAATAATGAGAATGCCAGTCA
GCAAAACGGACGCTTGTTTCCAATTTTCACGCCCCCCCCCTCCTCCCTCC
TCGGCAATCACCGCAACAAGGCAGGTGGACGCAACACTAGAGACGTCGCA
CGAAATATTTGCCTTGCTTTGCGACGGAAAGCTGAAGCCGGAGCTCGCCT
TCATGACGGGCCGCTTGAACGTTACGGGCGACCTGGTACGGGTCATGCGG
CTAGGCCCGCATTTGTTCAATATTTTTCGGCAACGACATCAACGATCAAG
ATCGCCACGAGAACTTACCGAAGACAAGAGTGCGACGATGAAAAAGACAG
TGGATCGACTCCAGCAGGATCATCACCTCGGCGGGAGTAGTAGGGGAAAA
AACGTAGTAAAGGGGAAGATGCCCAGAAAGAGCATAGCTACGCCAGCAGC
TCGGCTTTGACTCGCTTGTACGACGAGTGACTCGCTTGTACGACGAGTGA
CTCGCTTGTACGACGAGTGACTCGCTTGTACGACGAGTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig19183:1728..4868+

>mRNA_H-paniculata_contig19183.4821.1 ID=mRNA_H-paniculata_contig19183.4821.1|Name=mRNA_H-paniculata_contig19183.4821.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig19183:1728..4868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGAGCCCGAGGAGAGGACGCGAGAATTGTTCAACGTCATATCTGA
CGAGTTGCTCGGGAAAATCAGTTTCGAGACGATGGGTGAGCCCGAGGAGA
GGACGCGAGAATTGTTCAACGTCATATCTGACGAGTTGCTCGGGAAAATC
AGTTTCGAGACGACGGGTTCCGTGATTAGATTCTTGGTGGGCTCAGATGT
TCGCCGGGTTTGTCGGATTGTGGACATCCGCGGCGCCGGCGCGGTGTCGG
TGATGGAGGAAGACCGAAAAATGAAGACGGGTTCCGTGATTAGATTCTTG
GTGGGCTCAGATGTTCGCCGGGTTTGTCGGATTGTGGACATCCGCGGCGC
CGGCGCGGTGTCGGTGATGGAGGAAGACCGAAAAATGAAGGTGGACGCAA
CACTAGAGACGTCGCACGAAATATTTGCCTTGCTTTGCGACGGAAAGCTG
AAGCCGGAGCTCGCCTTCATGACGGGCCGCTTGAACGTTACGGGCGACCT
GGTACGGGTCATGCGGCTAGGCCCGCATTTGTTCAATATTTTTCGGCAAC
GACATCAACGATCAAGATCGCCACGAGAACTTACCGAAGACAAGAGTGCG
ACGATGAAAAAGACAGTGGATCGACTCCAGCAGGATCATCACCTCGGCGG
GAGTAGTAGGGGAAAAAACGTAGTAAAGGGGAAGATGCCCAGAAAGAGCA
TAGCTACGCCAGCAGCTCGGCTTTGAGTGGACGCAACACTAGAGACGTCG
CACGAAATATTTGCCTTGCTTTGCGACGGAAAGCTGAAGCCGGAGCTCGC
CTTCATGACGGGCCGCTTGAACGTTACGGGCGACCTGGTACGGGTCATGC
GGCTAGGCCCGCATTTGTTCAATATTTTTCGGCAACGACATCAACGATCA
AGATCGCCACGAGAACTTACCGAAGACAAGAGTGCGACGATGAAAAAGAC
AGTGGATCGACTCCAGCAGGATCATCACCTCGGCGGGAGTAGTAGGGGAA
AAAACGTAGTAAAGGGGAAGATGCCCAGAAAGAGCATAGCTACGCCAGCA
GCTCGGCTTTGA
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