mRNA_H-paniculata_contig1918.4819.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1918.4819.1
Unique NamemRNA_H-paniculata_contig1918.4819.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1918.4819.1 vs. uniprot
Match: A0A6H5KLA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.430e-19
Identity = 63/167 (37.72%), Postives = 84/167 (50.30%), Query Frame = 3 
Query:   54 ACREYNAALQHILRTMITRTPSEDELRKGGFSIFDREGYYGAKINCITIYEFRCKAATITMVGKRQSGTRVSSQLAGAEQVKINGHEWIFDSHGILVGPPLRLGMSGEGSKTAAQKYRKTLDFPPDEQHARRGR*SNGGVANDGVFWLIPAGMVFAGGKCLESVT*E 554
            AC +Y       L  M  R  S  +L+K G    +    +  K N  T+Y F  +AA   MV    +   + +QL GA + KIN H+  F     L     RL +SGEG   +A KY   L  PP E+ A++ R   G VANDG  WL+PAG+V AGG  L++VT E
Sbjct:  122 ACSKYTLGRTLALDAMRERELSLSQLQKSGVERLNLGSPFKEKTNYATVYVFSDRAAANRMVDMWANVIGIGAQLCGAYRKKINEHD--FGDRRFL-----RLMISGEGGWQSAAKYGTGLINPPTEERAKKPRQKYGRVANDGPAWLVPAGLVLAGGGALKTVTWE 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1918.4819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLA4_9PHAE6.430e-1937.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1918contigH-paniculata_contig1918:19591..20868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size941
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1918.4819.1prot_H-paniculata_contig1918.4819.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1918 20411..20770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.1962397-UTR-H-paniculata_contig1918:19590..198151622929466.1962397-UTR-H-paniculata_contig1918:19590..19815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1918 19591..19815 -
1691480873.7291973-UTR-H-paniculata_contig1918:19590..198151691480873.7291973-UTR-H-paniculata_contig1918:19590..19815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1918 19591..19815 -
1622929466.2110376-UTR-H-paniculata_contig1918:20152..204101622929466.2110376-UTR-H-paniculata_contig1918:20152..20410Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1918 20153..20410 -
1691480873.7400208-UTR-H-paniculata_contig1918:20152..204101691480873.7400208-UTR-H-paniculata_contig1918:20152..20410Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1918 20153..20410 -
1622929466.2351499-UTR-H-paniculata_contig1918:20770..208681622929466.2351499-UTR-H-paniculata_contig1918:20770..20868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1918 20771..20868 -
1691480873.7595649-UTR-H-paniculata_contig1918:20770..208681691480873.7595649-UTR-H-paniculata_contig1918:20770..20868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1918 20771..20868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929466.2241328-CDS-H-paniculata_contig1918:20410..207701622929466.2241328-CDS-H-paniculata_contig1918:20410..20770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1918 20411..20770 -
1691480873.7510965-CDS-H-paniculata_contig1918:20410..207701691480873.7510965-CDS-H-paniculata_contig1918:20410..20770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1918 20411..20770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1918.4819.1

>prot_H-paniculata_contig1918.4819.1 ID=prot_H-paniculata_contig1918.4819.1|Name=mRNA_H-paniculata_contig1918.4819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MITRTPSEDELRKGGFSIFDREGYYGAKINCITIYEFRCKAATITMVGKR
QSGTRVSSQLAGAEQVKINGHEWIFDSHGILVGPPLRLGMSGEGSKTAAQ
KYRKTLDFPPDEQHARRGR*
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mRNA from alignment at H-paniculata_contig1918:19591..20868-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1918.4819.1 ID=mRNA_H-paniculata_contig1918.4819.1|Name=mRNA_H-paniculata_contig1918.4819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig1918:19591..20868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATACTTCTCCTTAGTAGGGACGGCGTTTCATGGAAGGTCGCTTTCCAA
GAGGCCTGTCGGGAGTACAATGCGGCGCTACAGCATATCCTGCGCACGAT
GATCACGAGGACCCCCTCCGAGGACGAGTTGCGTAAAGGCGGGTTCTCGA
TCTTCGACCGAGAGGGGTACTACGGTGCCAAGATCAACTGCATAACGATC
TACGAGTTTCGCTGCAAGGCGGCTACCATCACCATGGTCGGCAAGCGGCA
GTCGGGCACGAGAGTGTCATCTCAGCTGGCCGGTGCTGAGCAGGTCAAGA
TCAATGGCCACGAGTGGATATTTGATAGCCACGGCATTCTTGTCGGACCG
CCTCTTCGTCTCGGCATGTCGGGAGAGGGGTCGAAGACTGCGGCACAGAA
ATACCGAAAGACACTCGACTTTCCCCCCGATGAACAGCACGCAAGGCGAG
GTCGATAGAGCAACGGCGGTGTGGCCAACGACGGGGTGTTCTGGCTCATC
CCGGCAGGCATGGTATTTGCAGGAGGCAAATGCCTGGAGAGCGTGACTTG
AGAAATCTACGTATGGAGGACGGGGGACGACAAGAGGGAATCCCTGGAGG
TCCACGAGGCCATCCTTCCCCTCGGCGTGTGGGAGGCCTTGCATTCAACC
CTGTATCCTTATGTCTACACCATAAGATCTTCGGAACGTTCACAGACGAA
CAGCGGGGGCGTGGAGGTAAGTAAACCGCCGTTCAACGAACACCGCTCTG
GGGGCTTGCTATGAACAAAATGGTCTCAGATCATGTGGTTGCTTCATGAG
GCGGCGCGGATTGTATTGCCGTGTTGGTCGATCTTGCGTATTGCGTCAAG
TACGACATCAGCGTTGTGGGCAATAATGGCTAAACCGCACTTAACCCCTG
TATATGCGGCTTGCTGCACGACTATGTCGAACGCGTCGTCATACTACCCA
GATGTGACGTGTTGGATACAATGGCACTTGAGGAATCAATGCCCACCTCC
CGCCCCCTCTGTTGCCGCCATGCGCTCGCTCCCGATAACGTCGTCCTCAT
CAGCCAAAGCTCCCATCAGTGTAGCCCAGCAGGAATACCTCGCCTACCGA
CAGCTGCCCTCGGGTGGCAGGGAGAAGGGCGACCGCGGATGGATTAAATA
CACCGGGCGGGCACCAAGTCCACTGGCGAGGGCAAGAGCGAAGGCGGTGC
GTCAGTGGTGATTCGACCTTGTCGTTATTGACTGGTTAGCAGCTGTCCGT
TTTTTGTTGTCTGTTGGTGTCTCAAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1918:19591..20868-

>mRNA_H-paniculata_contig1918.4819.1 ID=mRNA_H-paniculata_contig1918.4819.1|Name=mRNA_H-paniculata_contig1918.4819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig1918:19591..20868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCACGAGGACCCCCTCCGAGGACGAGTTGCGTAAAGGCGGGTTCTC
GATCTTCGACCGAGAGGGGTACTACGGTGCCAAGATCAACTGCATAACGA
TCTACGAGTTTCGCTGCAAGGCGGCTACCATCACCATGGTCGGCAAGCGG
CAGTCGGGCACGAGAGTGTCATCTCAGCTGGCCGGTGCTGAGCAGGTCAA
GATCAATGGCCACGAGTGGATATTTGATAGCCACGGCATTCTTGTCGGAC
CGCCTCTTCGTCTCGGCATGTCGGGAGAGGGGTCGAAGACTGCGGCACAG
AAATACCGAAAGACACTCGACTTTCCCCCCGATGAACAGCACGCAAGGCG
AGGTCGATAGATGATCACGAGGACCCCCTCCGAGGACGAGTTGCGTAAAG
GCGGGTTCTCGATCTTCGACCGAGAGGGGTACTACGGTGCCAAGATCAAC
TGCATAACGATCTACGAGTTTCGCTGCAAGGCGGCTACCATCACCATGGT
CGGCAAGCGGCAGTCGGGCACGAGAGTGTCATCTCAGCTGGCCGGTGCTG
AGCAGGTCAAGATCAATGGCCACGAGTGGATATTTGATAGCCACGGCATT
CTTGTCGGACCGCCTCTTCGTCTCGGCATGTCGGGAGAGGGGTCGAAGAC
TGCGGCACAGAAATACCGAAAGACACTCGACTTTCCCCCCGATGAACAGC
ACGCAAGGCGAGGTCGATAG
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