mRNA_H-paniculata_contig19172.4815.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19172.4815.1
Unique NamemRNA_H-paniculata_contig19172.4815.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 7.100e-19
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   25 VHKRAVVKILQYVLRTADLGITYG-GKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVNEVRF 303
            +H RA + IL YV+RT+DLGIT+G G   G+ M  +AD+DYA+    RR VSGG V+ G G ISW SRTQ+      T AEYV LA+ + EV F
Sbjct:  107 IHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLF 200          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.760e-17
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   25 VHKRAVVKILQYVLRTADLGITYG-GKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVNEVRF 303
            +H RA + IL YV+RT+DLGIT+G G    + M  + D+DYA+    RR VSGG V+ GGG ISW SRTQ+      T AEYV +A+ + E+ F
Sbjct:  943 IHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLF 1036          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: UPI001FB0FE5C (secreted RxLR effector protein 161-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0FE5C)

HSP 1 Score: 79.7 bits (195), Expect = 3.900e-16
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVNE 294
            K+  N G+ H  A  ++++Y+ RT    +TY   D  +E++ Y+DSD+A CQDS R  SG   LL GGAISW S  Q +TA+   AAE+V L E  N+
Sbjct:  105 KYLSNPGLGHWEATERVMRYLKRTRSCMLTYRRSD-NLEIIGYSDSDFAGCQDSLRSTSGYVFLLAGGAISWKSSIQGLTASSTMAAEFVALYEASNQ 201          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A2K3JRI6_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JRI6_TRIPR)

HSP 1 Score: 77.8 bits (190), Expect = 7.650e-16
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVN 291
            ++  N G+ H +A  K+++Y+ RT D  +TY   D  +E+  Y+DSDY  CQDS+R  SG   +L GGA+SW S  Q +TA+   AAE++   E  N
Sbjct:   21 RYFGNPGMDHWKATKKVMRYLKRTKDYMLTYRXSD-QLEITGYSDSDYXGCQDSKRSTSGYIYMLAGGAVSWRSAKQTLTASSTMAAEFIACYEASN 116          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A2K3L3F6_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L3F6_TRIPR)

HSP 1 Score: 80.1 bits (196), Expect = 2.170e-15
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVN 291
            ++  N G+ H +A  K+++Y+ RT D  +TY   D  +E+  Y+DSDYA CQDS+R  SG   +L GGA+SW S  Q +TA+   AAE++   E  N
Sbjct:  760 RYLSNPGMDHWKAAKKVMRYLKRTKDYMLTYRRSD-QLEITGYSDSDYAGCQDSKRSTSGYIYMLAGGAVSWRSAKQTLTASSTMAAEFIACYEASN 855          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: UPI001FB0C8BD (secreted RxLR effector protein 161-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0C8BD)

HSP 1 Score: 74.3 bits (181), Expect = 7.520e-15
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAE 282
            ++  N G+ H  A  ++++Y+ RT    +TY   D  +E++ Y+DSD+A CQDS R  SG   LL GGAISW S  Q +TA+   AAE+V   E
Sbjct:   33 RYLSNPGLDHWEAAKRVMRYLKRTRSYMLTYRRSD-NLEIIGYSDSDFAGCQDSLRSTSGYVFLLAGGAISWKSSKQGLTASSTMAAEFVACYE 125          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A2Z7B5Y1_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B5Y1_9LAMI)

HSP 1 Score: 77.0 bits (188), Expect = 2.260e-14
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVN 291
            ++  N G+ H +A  ++++Y+ RT +  +TY   D  +E++ Y+DSD+A CQDS R  SG   LL GGAISW S  Q +TA+   AAE+V   E  N
Sbjct:  230 RYLSNPGMDHWKAAKRVMRYLKRTRNYMLTYRKSD-SLEIIGYSDSDFAGCQDSLRSTSGYIFLLAGGAISWRSSKQGLTASSTMAAEFVACYEASN 325          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.250e-14
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVNE 294
            +F EN G  H  A +K+++Y+L+T D+GITY G   G ++ AY+D+D+A  +D RR VSG  +++ G  + W S  Q+  A   T AEY  L+E + E
Sbjct:  340 RFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGL-LGTKLTAYSDADWAGNRDDRRSVSGVMLMMCGAPVVWRSTFQKTVALSSTEAEYKALSECIKE 436          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A0J7K651_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K651_LASNI)

HSP 1 Score: 76.6 bits (187), Expect = 3.630e-14
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGK-DCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVNEV 297
            KF E     H  A  ++L+Y+ RT ++GIT+ G  D   +++A++DSDYA+C D+R+ +S   ++   G + W SR Q + A   T AEYV + E   EV
Sbjct: 1110 KFLERPSNAHWNAAKRVLKYLKRTLNVGITFDGNCDQSNQLVAFSDSDYASCPDTRKSISSVVLMFNNGPVIWSSRKQSIVATSTTDAEYVAMCEAAKEV 1209          
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY)

HSP 1 Score: 75.5 bits (184), Expect = 8.890e-14
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYATCQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAE 282
            +F  + G+ H RA  K+L+Y+ RT D  +TY   D  +E++ YAD+DYA C D  +  SG   +L GGAISW S  Q +TA+    AEYV   E
Sbjct:  498 RFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVACYE 590          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19172.4815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD60_9PHAE7.100e-1952.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LC04_9PHAE9.760e-1748.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001FB0FE5C3.900e-1643.88secreted RxLR effector protein 161-like n=1 Tax=Im... [more]
A0A2K3JRI6_TRIPR7.650e-1641.24Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A2K3L3F6_TRIPR2.170e-1542.27Retrovirus-related Pol polyprotein from transposon... [more]
UPI001FB0C8BD7.520e-1542.55secreted RxLR effector protein 161-like n=1 Tax=Im... [more]
A0A2Z7B5Y1_9LAMI2.260e-1442.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A225UK66_9STRA3.250e-1440.82Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A0J7K651_LASNI3.630e-1438.00Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A2N9IDU9_FAGSY8.890e-1443.62Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19172contigH-paniculata_contig19172:2..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog67593.Physo140614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929465.66462-CDS-H-paniculata_contig19172:1..3041622929465.66462-CDS-H-paniculata_contig19172:1..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19172 2..304 +
1691480873.4662342-CDS-H-paniculata_contig19172:1..3041691480873.4662342-CDS-H-paniculata_contig19172:1..304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19172 2..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19172.4815.1prot_H-paniculata_contig19172.4815.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19172 2..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19172.4815.1

>prot_H-paniculata_contig19172.4815.1 ID=prot_H-paniculata_contig19172.4815.1|Name=mRNA_H-paniculata_contig19172.4815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
KFSENTGVVHKRAVVKILQYVLRTADLGITYGGKDCGIEMLAYADSDYAT
CQDSRRLVSGGAVLLGGGAISWHSRTQEVTAARITAAEYVPLAETVNEVR
F
back to top

mRNA from alignment at H-paniculata_contig19172:2..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19172.4815.1 ID=mRNA_H-paniculata_contig19172.4815.1|Name=mRNA_H-paniculata_contig19172.4815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig19172:2..304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTTCTCTGAGAACACAGGGGTGGTGCACAAGAGAGCTGTGGTGAAAAT TCTGCAGTACGTGCTAAGGACCGCGGACCTGGGAATCACCTACGGTGGAA AGGATTGCGGGATAGAAATGTTGGCGTACGCTGACTCGGACTACGCGACG TGCCAGGACAGCCGGCGCTTGGTCTCCGGCGGAGCGGTACTGCTGGGGGG GGGCGCGATCAGTTGGCACTCAAGGACTCAGGAGGTGACGGCGGCGAGGA TAACAGCAGCAGAGTACGTCCCGTTGGCGGAGACGGTGAACGAAGTGCGT TTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19172:2..304+

>mRNA_H-paniculata_contig19172.4815.1 ID=mRNA_H-paniculata_contig19172.4815.1|Name=mRNA_H-paniculata_contig19172.4815.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig19172:2..304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGTTCTCTGAGAACACAGGGGTGGTGCACAAGAGAGCTGTGGTGAAAAT
TCTGCAGTACGTGCTAAGGACCGCGGACCTGGGAATCACCTACGGTGGAA
AGGATTGCGGGATAGAAATGTTGGCGTACGCTGACTCGGACTACGCGACG
TGCCAGGACAGCCGGCGCTTGGTCTCCGGCGGAGCGGTACTGCTGGGGGG
GGGCGCGATCAGTTGGCACTCAAGGACTCAGGAGGTGACGGCGGCGAGGA
TAACAGCAGCAGAGTACGTCCCGTTGGCGGAGACGGTGAACGAAGTGCGT
TTCAAGTTCTCTGAGAACACAGGGGTGGTGCACAAGAGAGCTGTGGTGAA
AATTCTGCAGTACGTGCTAAGGACCGCGGACCTGGGAATCACCTACGGTG
GAAAGGATTGCGGGATAGAAATGTTGGCGTACGCTGACTCGGACTACGCG
ACGTGCCAGGACAGCCGGCGCTTGGTCTCCGGCGGAGCGGTACTGCTGGG
GGGGGGCGCGATCAGTTGGCACTCAAGGACTCAGGAGGTGACGGCGGCGA
GGATAACAGCAGCAGAGTACGTCCCGTTGGCGGAGACGGTGAACGAAGTG
CGTTTC
back to top