prot_H-paniculata_contig19162.4810.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19162.4810.1
Unique Nameprot_H-paniculata_contig19162.4810.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length118
Homology
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A8J5YZC3_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZC3_9ROSI)

HSP 1 Score: 93.6 bits (231), Expect = 7.360e-20
Identity = 48/117 (41.03%), Postives = 79/117 (67.52%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFS-PFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLII 116
            + T+R++ +LAA+ ++K   +D  +A+LN  +EEE++V  P  F  P   D+  V RL+K+LY LKQ+ R   + +D +L+G+G +RS + P LY  + E GET ++VSVYVD+L++
Sbjct:  173 LDTIRLLVALAAQLEWKIHQLDVKSAFLNGFLEEEIYVEQPEGFKVPHKEDV--VYRLKKALYGLKQAPRAWYSRIDSYLIGLGFERSLSEPTLYIKK-ENGETQLIVSVYVDDLLV 286          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 93.2 bits (230), Expect = 8.090e-20
Identity = 49/118 (41.53%), Postives = 76/118 (64.41%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRD-IPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA 117
            ++++ I+  LAA++D     MD   A+L+AP++ E+F+  P  F   S + + LV RL+KSLY LKQSGRN N  LD++L+  G  R+    C+Y  + + GE  I+V ++VD+LIIA
Sbjct:  234 ITSITILMQLAAQYDLTVHQMDVKTAFLHAPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIA 349          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-19
Identity = 49/118 (41.53%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRD-IPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA 117
            ++T+R++ ++A   D + + MD D AYL + +EE+++V  PP +     +   LV RLRKSLY LKQSGRN +  +D +  G G   S+  PCLY      GE  ++V +YVD+LIIA
Sbjct:   64 ITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIV-LYVDDLIIA 180          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 91.7 bits (226), Expect = 3.520e-19
Identity = 48/118 (40.68%), Postives = 76/118 (64.41%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRD-IPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA 117
            ++++RI+  LAA+++     MD   A+L+ P++ E+F+  P  F   S + + LV RL+KSLY LKQSGRN N  LD++L+  G  R+    C+Y  + + GE  I+V ++VD+LIIA
Sbjct:  259 ITSIRILMQLAAQYNLTVHQMDVKTAFLHVPIDHEIFMEQPMGFEELSENGVKLVYRLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIA 374          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.900e-19
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDI-PLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLII 116
            M+T+R+V +LA   D + + MD D AYL + +EE++++  PP +  +  +   LV RLRKSLY LKQSGRN +  +D +  G G+  S   PCLY      GE  ++V +YVD+LII
Sbjct:  284 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEILVIV-LYVDDLII 399          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.150e-19
Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPF-SRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLII 116
            ++T+R+V +LA   D + + MD + AYL + +EE+++V  PP +  + S    LV RLRKSLY LKQSGRN +  +D +  G G   S+  PCLY      GE  ++V +YVD+LII
Sbjct:   64 ITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIV-LYVDDLII 179          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.280e-18
Identity = 50/118 (42.37%), Postives = 73/118 (61.86%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDI-PLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA 117
            M+T+R+V +LA   D + + MD D AYL + +EE++++  P  +  +  +   LV RLRKSLY LKQSGRN +  +D +  G G   S+  PCLY      GE  ++V +YVD+LIIA
Sbjct:  582 MTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIA 698          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A8J5YT98_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YT98_9ROSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.760e-18
Identity = 46/117 (39.32%), Postives = 77/117 (65.81%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFS-PFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLII 116
            + T+R++ ++AA+  +K   +D   A+LN  +EEE++V  P  F  P   D  +V RL+K+LY LKQ+ R   + +D +L+G+G +RS + P LY  + E G+T ++VSVYVD+L++
Sbjct:   66 LDTIRLLVAIAAQMGWKIHQLDVKLAFLNGFLEEEIYVEQPEGFKVPHKED--MVYRLKKALYGLKQAPRAWYSRIDSYLIGLGFERSLSEPTLYVKK-ENGKTQLIVSVYVDDLLV 179          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A8J5ZCY7_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZCY7_9ROSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.320e-18
Identity = 43/116 (37.07%), Postives = 79/116 (68.10%), Query Frame = 0
Query:    1 MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRDIPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLII 116
            + T+R++ +LAA+ ++K   +D  +A+LN  +EEE++V  P  F    ++  +V +L+K+LY LKQ+ R   + +D +L+G+G +RS + P LY  + + G+T ++VSVYVD+L++
Sbjct:  857 LDTIRLLVALAAQMEWKIHQLDVKSAFLNGFLEEEIYVEQPEGFKVLHKE-DMVYKLKKALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKK-KNGKTQLIVSVYVDDLLV 970          
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.890e-18
Identity = 45/118 (38.14%), Postives = 76/118 (64.41%), Query Frame = 0
Query:    2 STLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRD--IPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEGGETDILVSVYVDNLIIA 117
            +++R++ SLAA+H+ + + MD + A+LN+ ++E++++ +P   +          V +L+KSLY LKQ+ R  N T+D F+L IG  +S    C+Y  R +  E  ILVS+YVD+LI+A
Sbjct:  136 TSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILA 251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19162.4810.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5YZC3_9ROSI7.360e-2041.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT8.090e-2041.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TII5_9STRA2.190e-1941.53Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT3.520e-1940.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA4.900e-1942.74Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA5.150e-1942.74Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA1.280e-1842.37Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
A0A8J5YT98_9ROSI2.760e-1839.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5ZCY7_9ROSI3.320e-1837.07Integrase catalytic domain-containing protein n=2 ... [more]
A0A6G0WHK2_9STRA6.890e-1838.14Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..117
e-value: 2.6E-21
score: 76.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19162contigH-paniculata_contig19162:1879..2232 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19162.4810.1mRNA_H-paniculata_contig19162.4810.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19162 1689..3177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19162.4810.1 ID=prot_H-paniculata_contig19162.4810.1|Name=mRNA_H-paniculata_contig19162.4810.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MSTLRIVFSLAAEHDFKFEAMDADAAYLNAPVEEELFVTLPPEFSPFSRD
IPLVRRLRKSLYSLKQSGRNRNNTLDDFLLGIGIQRSTTIPCLYFSRDEG
GETDILVSVYVDNLIIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2