mRNA_H-paniculata_contig19153.4807.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19153.4807.1
Unique NamemRNA_H-paniculata_contig19153.4807.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: D7G2S0_ECTSI (Ornithine decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S0_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.680e-19
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWDGSE 180
            FHCGSGC +AQAYP+AL V + VFDLAA++GV+LTLLDIGGGFPGWDGSE
Sbjct:  265 FHCGSGCQNAQAYPEALAVAKSVFDLAAQKGVMLTLLDIGGGFPGWDGSE 314
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: A0A6H5JKK4_9PHAE (ODC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-18
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWDGSE 180
            FHCGSGC +AQAYP+AL V + VFDLA R+GV LTLLDIGGGFPGWDGSE
Sbjct:  692 FHCGSGCQNAQAYPEALAVAKSVFDLADRKGVKLTLLDIGGGFPGWDGSE 741
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: A0A7S1AKA3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AKA3_NOCSC)

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWD 171
            FH GSGCS   A+  AL+  + VFD A+RQG+ LTLLDIGGGFPGWD
Sbjct:  555 FHVGSGCSQTGAFRSALQRAKAVFDEASRQGLSLTLLDIGGGFPGWD 601
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: A0A2V3IYX3_9FLOR (Antizyme inhibitor 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYX3_9FLOR)

HSP 1 Score: 65.1 bits (157), Expect = 7.750e-11
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWDG 174
            FH GSGC+D ++Y  AL   RFVFD+A + G+ L++LDIGGGFPG+DG
Sbjct:  231 FHVGSGCNDVKSYVQALSDARFVFDMATQLGMSLSVLDIGGGFPGFDG 278
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: A0A553RKE6_9TELE (Uncharacterized protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RKE6_9TELE)

HSP 1 Score: 62.4 bits (150), Expect = 6.990e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWDGSE 180
            FH GSGC+D ++Y  A+   R+VFDLA + G  +TLLDIGGGFPG D ++
Sbjct:  196 FHVGSGCTDPESYYQAISDARYVFDLATKLGFTMTLLDIGGGFPGSDDTK 245
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: Q4VSR1_CARAU (Ornithine decarboxylase (Fragment) n=2 Tax=Cyprinoidei TaxID=30727 RepID=Q4VSR1_CARAU)

HSP 1 Score: 59.7 bits (143), Expect = 8.580e-10
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWDGSE 180
            FH GSGC D + Y  A+   R+VFD+ A  G  +TLLDIGGGFPG D ++
Sbjct:    6 FHVGSGCPDPETYSQAISDARYVFDMGAELGYNMTLLDIGGGFPGSDDAK 55
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: A0A671N4L4_9TELE (Ornithine decarboxylase-like n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A671N4L4_9TELE)

HSP 1 Score: 62.0 bits (149), Expect = 9.530e-10
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWDGSE 180
            FH GSGC+D + Y  A+   RFVFD+ A  G  +TLLDIGGGFPG D ++
Sbjct:  196 FHVGSGCTDPETYSQAISDARFVFDMGAELGYNMTLLDIGGGFPGSDNTK 245
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: A9V8S4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V8S4_MONBE)

HSP 1 Score: 61.2 bits (147), Expect = 1.790e-9
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWD 171
            FH GSGC+DA A+ DA+   R VFD+A   GV L +LD+GGGFPG D
Sbjct:  261 FHVGSGCTDANAFADAVHRARQVFDMATELGVCLKILDVGGGFPGAD 307
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: D9J2J2_ANGAU (Ornithine decarboxylase 1 (Fragment) n=1 Tax=Anguilla australis TaxID=7940 RepID=D9J2J2_ANGAU)

HSP 1 Score: 59.7 bits (143), Expect = 2.170e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWDGSE 180
            FH GSGC+D + Y  A+   R VFD+ A  G  +TLLDIGGGFPG D S+
Sbjct:   68 FHVGSGCTDPETYSQAISDARCVFDMGAELGYNMTLLDIGGGFPGSDDSK 117
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BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Match: A0A7S2L8W3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2L8W3_9DINO)

HSP 1 Score: 60.8 bits (146), Expect = 2.310e-9
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   31 FHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIGGGFPGWD 171
            FH GSGCS   A+  ALR  R VFD A RQG  +TLLDIGGGFPG D
Sbjct:  148 FHVGSGCSQRGAFRGALRRARAVFDEAERQGFAMTLLDIGGGFPGAD 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19153.4807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2S0_ECTSI1.680e-1980.00Ornithine decarboxylase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKK4_9PHAE1.100e-1880.00ODC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S1AKA3_NOCSC3.100e-1165.96Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A2V3IYX3_9FLOR7.750e-1160.42Antizyme inhibitor 2 n=1 Tax=Gracilariopsis chorda... [more]
A0A553RKE6_9TELE6.990e-1056.00Uncharacterized protein n=1 Tax=Danionella translu... [more]
Q4VSR1_CARAU8.580e-1054.00Ornithine decarboxylase (Fragment) n=2 Tax=Cyprino... [more]
A0A671N4L4_9TELE9.530e-1056.00Ornithine decarboxylase-like n=2 Tax=Sinocyclochei... [more]
A9V8S4_MONBE1.790e-959.57Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
D9J2J2_ANGAU2.170e-956.00Ornithine decarboxylase 1 (Fragment) n=1 Tax=Angui... [more]
A0A7S2L8W3_9DINO2.310e-965.96Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19153contigH-paniculata_contig19153:2472..3826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7G2S0
KEGG rclassRC00299
KEGG koko:K01581,ko:K03843
KEGG ReactionR00670,R05973,R06238
KEGG Pathwayko00330,ko00480,ko00510,ko00513,ko01100,ko01110,ko01130,map00330,map00480,map00510,map00513,map01100,map01110,map01130
KEGG ModuleM00055,M00134
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004586,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006576,GO:0006591,GO:0006595,GO:0006596,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009308,GO:0009309,GO:0009445,GO:0009446,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0019752,GO:0033387,GO:0034641,GO:0042401,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0071704,GO:0097164,GO:1901564,GO:1901566,GO:1901576,GO:1901605
EggNOG free text desc.putrescine biosynthetic process from ornithine
EggNOG OGsCOG0019@1,KOG0622@2759
EC2.4.1.132,2.4.1.257,4.1.1.17
COG Functional cat.E
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929464.4173791-CDS-H-paniculata_contig19153:2471..25001622929464.4173791-CDS-H-paniculata_contig19153:2471..2500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19153 2472..2500 +
1691480872.888111-CDS-H-paniculata_contig19153:2471..25001691480872.888111-CDS-H-paniculata_contig19153:2471..2500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19153 2472..2500 +
1622929464.4291518-CDS-H-paniculata_contig19153:3673..38241622929464.4291518-CDS-H-paniculata_contig19153:3673..3824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19153 3674..3824 +
1691480872.9086173-CDS-H-paniculata_contig19153:3673..38241691480872.9086173-CDS-H-paniculata_contig19153:3673..3824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19153 3674..3824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19153.4807.1prot_H-paniculata_contig19153.4807.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19153 2472..3824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19153.4807.1

>prot_H-paniculata_contig19153.4807.1 ID=prot_H-paniculata_contig19153.4807.1|Name=mRNA_H-paniculata_contig19153.4807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
VQSKRFAASCFHCGSGCSDAQAYPDALRVTRFVFDLAARQGVILTLLDIG
GGFPGWDGSE
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mRNA from alignment at H-paniculata_contig19153:2472..3826+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19153.4807.1 ID=mRNA_H-paniculata_contig19153.4807.1|Name=mRNA_H-paniculata_contig19153.4807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1355bp|location=Sequence derived from alignment at H-paniculata_contig19153:2472..3826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAATCGAAGAGATTTGCAGCGAGTTGGTAAGCCTCTTTCTCTGATGT
ATTGGACATGACATCTGAAGAATAACACGCGTATATTTGTTTGTTGGCGA
GCGTGGCACTTGCCACGATGACATTGCGTTTTTGACCTTGAGGAAGCAAA
CGCTCAGCATATGAAACGAGTCGTGGTTGAACCGAGGCTCTGCGTTTCGG
AAGCTGACCCGATATCCGACTTACTCCTCTTCGACGCTTCGGTGTACATA
CGTAGCGGCTGTTTTCTTCTGCTTGAATTTCTTTCCGTTAATGTCTCCGA
GGTTCTCGGTACCCCCCTCCCGCCGTGCGCGCACTTCTTGTCTACCTCCG
GTTTCCTGTCCAATTGATGCTCGGTGGTCATGTGTACCTATTCAGTAATT
CAGCACTATAGCGAATCGCTCCAATGTACGTCCCGATATTCCATAATATG
CGAGGATGTTGGTGATGGTTGTTTCGGAACAGCCTTTCAACTATTTTCTA
AAAAACTTAGAAAAACCGAATCCGCAATGGACATGGTGCTTACTGCTTAC
CTTCATGCGAGCGCAGCGAGCCGTTTTGCCTGGATCTAGGACAGAGAACG
GACTGTATGAGTGTGGTTATATGGGTATCGTCTCCCTTCCTTGATGTTTT
GCTCTACCTCGTCATGCCCTTCCCCCCTCCTCCCCCCCGCCTGGGACACA
AAAATTGATGTCGATGATGTTTGAATATATACCATTTTGTTCTCTCTGTT
TTTACCCCCGCAGATTACCCTCACCGTAGAGCTGCGGCTGCCTCTAGTGG
GGGCCAGGTGAGCCGGACAGAAGGTTGGGCTGGAAAGACGGGGTATAGGG
AGAGTAGTTTGTCGCCTGTAAAAAAAAGCTTGATCTCTTTGTTCAGTCGT
TCCTGCAGGCATTTTTAGTACGCCTACACTGGACCTATTGATAGCTGAGG
AAAATCGATGTGAGATCAGCATAGCTGTAGGTCCTTCTATTGGCACCAAC
AAGTATGGGGAGCATTGGGTGCGTTTCGCTTGTATCGGTGCTCCGAGAAA
ACCGCGACAGCAGTTTTTTTTAATTGTCGCACTAGCTGAACCCCTATTTT
CATTTGACTTTTCTCTAGCCTTTTTACTCGTTTCAACCAATTCCACCGTA
CCGCACATATGTATCCCTGTTGCTCTCTGTGCTGGGCTCTTTTTTGCGAA
AGCTTCCACTGCGGGAGCGGGTGCAGCGATGCTCAGGCCTACCCCGATGC
ACTCCGCGTGACTCGATTTGTCTTCGATCTCGCCGCAAGGCAAGGAGTTA
TACTAACCCTGCTCGACATTGGAGGAGGCTTTCCTGGATGGGACGGGTCG
GAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig19153:2472..3826+

>mRNA_H-paniculata_contig19153.4807.1 ID=mRNA_H-paniculata_contig19153.4807.1|Name=mRNA_H-paniculata_contig19153.4807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig19153:2472..3826+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAATCGAAGAGATTTGCAGCGAGTTGGTGCAATCGAAGAGATTTGCA
GCGAGTTGCTTCCACTGCGGGAGCGGGTGCAGCGATGCTCAGGCCTACCC
CGATGCACTCCGCGTGACTCGATTTGTCTTCGATCTCGCCGCAAGGCAAG
GAGTTATACTAACCCTGCTCGACATTGGAGGAGGCTTTCCTGGATGGGAC
GGGTCGGAGCTTCCACTGCGGGAGCGGGTGCAGCGATGCTCAGGCCTACC
CCGATGCACTCCGCGTGACTCGATTTGTCTTCGATCTCGCCGCAAGGCAA
GGAGTTATACTAACCCTGCTCGACATTGGAGGAGGCTTTCCTGGATGGGA
CGGGTCGGAG
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