mRNA_H-paniculata_contig1915.4806.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1915.4806.1
Unique NamemRNA_H-paniculata_contig1915.4806.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1915.4806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1915contigH-paniculata_contig1915:13382..16117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929464.3744357-CDS-H-paniculata_contig1915:13383..136261622929464.3744357-CDS-H-paniculata_contig1915:13383..13626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1915 13384..13626 -
1691480872.8618839-CDS-H-paniculata_contig1915:13383..136261691480872.8618839-CDS-H-paniculata_contig1915:13383..13626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1915 13384..13626 -
1622929464.3863032-CDS-H-paniculata_contig1915:16054..161171622929464.3863032-CDS-H-paniculata_contig1915:16054..16117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1915 16055..16117 -
1691480872.8751044-CDS-H-paniculata_contig1915:16054..161171691480872.8751044-CDS-H-paniculata_contig1915:16054..16117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1915 16055..16117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1915.4806.1prot_H-paniculata_contig1915.4806.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1915 13384..16117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1915.4806.1

>prot_H-paniculata_contig1915.4806.1 ID=prot_H-paniculata_contig1915.4806.1|Name=mRNA_H-paniculata_contig1915.4806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
TIRPGAVARYQTTTKIKCGKRTFEGRGMSYTTAFDCDGDDDDTRFLLCNE
KISTLVSDINTDSASDSQLVHQQPKNEQIDTSPMTINTMPNTMPNTNTNA
GT
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mRNA from alignment at H-paniculata_contig1915:13382..16117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1915.4806.1 ID=mRNA_H-paniculata_contig1915.4806.1|Name=mRNA_H-paniculata_contig1915.4806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2736bp|location=Sequence derived from alignment at H-paniculata_contig1915:13382..16117- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAATCAGGCCAGGTGCTGTGGCGCGATATCAAACAACAACAAAAATCAA
GTGTGGGAAACGGGTGAGTAGCATATTCATCTTTCGGAATCTGTATCACG
TCATTACGAATACATCGTGGCGATCTCAGAAACAGAGGTCGAACGCATGT
AGCAGGAGCTTCGAAGAGGCACGTGTGGGATGGCAATGTTTTAATAGATC
AGTTACCCTGATCGACCGTGCTCTCTTCAGATAACAGTTGATGATGGCTT
ATATGTGTGGGTGATTCGATGCAAGACAAAGGGTAGACTCCCATGTGTGA
GTGGTTCAATGCAAGATAAAGGGTAGGTTGCAGCGTTCATGCCAACGATG
GTGCTATGTGCTCCACAACCACGAACATTGAAAGTTTGAACTTTGGTCAC
CTTCAACTCTCTATTTCTCACAACGATCATGTTAGATTCATCCGAGATAC
CAAGACACACATGCAACGTGCATTTGTTGCAATCCACATGCCAGGAATCG
ATCCGTGCAGATAGCTGATATGTATACAGAGCCATGAGATGGCTTGCTTG
TATGGGTGGTTCGATGTAAGATGAAGTGGAAGTTGCAATGTGCATGCCAA
CGAGGGTGCATGCAGGCTCAAGCACCAAAAAATTAAATTTTAAGTGTGGC
CATATTCTGATTCTGATTTCCTAATATGCGCAGCCATCATCATGGATTCC
GATTCATGCGGGATACTAAGATATAAGATACACATGCAATGTGCATTTGC
TGCAATCCGCATGCCGATGGTCAACCCATACAGAGACAGCCGACATGTAT
ATACAACCTACGATGGGTGGGAGATTTTTCACTAATTGCTTGCTGATGTG
CAAACTGGCGAGACTAGGTAGCCAAGTTCGAAAATGTGACGATCAGTTGA
CCATCCGAACATTCAACATTCATAACATTAAATAATCCTTTAGCCATCTA
CCAAGTGGTCGAAAAACATGGTTGAGTAGGCAAATTCAGAATGTTCACCC
ATGAACGAGCCATCTTTAACCGTCCTGACGCGTGGGCAGCACGCGCTTGC
GCCGGTTTGAGCTTTGCCAACATAACACTATGCCTAGGGGGTTAATTCCA
GCGTTGGTTCTGCTCGCGTCGGGGCATGCGACAAAGCGCGATCGATAAAA
CAAGTCACGGAAAACGGTTATTTTTCGACCGCTTGGTAAACACGCCTCAC
ACCATACAGATTATGTTTCAGTCTGTAGTGATTTATTGCCATTTATTCAC
GGGTGGTTGTCATTTTTGCAAGGTGTTCGCGCCATCCGTACCGTACATGC
GTACAAAAATATGTGTGGAGTTCAGTGGAGAAGAAATCGACGTTGCAACC
AGTCAAAACGTCACCGCTATTAATACGTTTCGTGACTCCTTTTTGGTACC
AGTATAATTGTATTGAGAAGTGTTCATAACTGAAGCTTGAGGTCAACTGC
ACAAACCTCGACATGGGTACAATGGAGTTGTTAAACGAGCATTAGAGCTA
TAGTTCTACCAACTGTGGCAAGTGGGTTGATTTGCGAATGAGAATCCTGG
TGGGTGAAAGGTGGGGGTTATTTCAGGGATGTCATTCGAACAAGTGGAGA
CATTTTTTTTTGTTTTATCCTTGAAGGAGAGGAGGAAACCTTTGTCCAAC
ACTTACCCCGAGATCGGGTTCGTGTGTCGGTTACCCGAAGGTCCGACTAG
ACCGCTGCGCGGCAGACAGATATGTGAGGTAGGCACCCCGAGCAAAGTCA
TACGGACGCTCGGGGTAGTGTGGGACTCTCTGACCCACTAAAACTCCTCA
TCATGTTGATTCCCTCAACTTGGTGCAGTACACGCATCGCTCTGCTCGAC
GAGCTTCGGCCCTAGAAAGTGAAGACGATTTCATATTTACGTACGTTACA
CACGCAAGTGATACTGTAAAAGTTTCTTCTTGTAAAGATTTACTTAGCTC
ATGCCGTGGCTGGTGAAAAATATGCGAGAAGTCCTGGGACTCGGCCGTGA
TGGGGTCAGAATGCGATGTATATCATATGAGCAGGACCTTGTCCATCTAA
CCCCCTAAAAATTGTTCAATTTGTGGATAATAACCAATTAATGCAGCAGC
TTGAAGAAGTTGAGCTAACTCCGTTTTTATTTTACGATTATTGTAATGTT
TTCTACAGTGCACTAAGTTATGCATCCCTGCCTGTACTGTTGACTTCCTA
TTTACTCTGTGATACAATTCTAACCGCATTCTCATAGTGTAGACACCATA
AAGCTGTCCTTGGCAATTGATGCATATGTCGATGTCACTGTGTTGCACGT
GGCAGTAGATTTCTTGTTCCTGTATGAAGTGCGCTGCTGGTTCAATTTCG
TGACCCCCCCCCGCCGCGTACGTGCCCCGTGTGGCGTGTGCGTATACCTT
ATAACGCCCTTGGCTCATAACATATCGGCGCCTCTAGCGCAGTCATGATA
TCTTTACCAAACATACTGTTGTTCTTCCTAACACTAAACAGACTTTTGAG
GGCAGGGGAATGTCATATACAACAGCATTCGATTGCGACGGCGACGACGA
CGACACCAGATTCTTGCTCTGCAACGAGAAAATTTCGACATTGGTCAGCG
ACATCAACACGGATTCAGCTTCAGATTCACAACTAGTTCATCAACAACCA
AAGAACGAACAAATTGACACCTCTCCTATGACGATCAACACGATGCCCAA
CACGATGCCCAACACCAATACCAACGCCGGCACGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1915:13382..16117-

>mRNA_H-paniculata_contig1915.4806.1 ID=mRNA_H-paniculata_contig1915.4806.1|Name=mRNA_H-paniculata_contig1915.4806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig1915:13382..16117- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAATCAGGCCAGGTGCTGTGGCGCGATATCAAACAACAACAAAAATCAA
GTGTGGGAAACGGACAATCAGGCCAGGTGCTGTGGCGCGATATCAAACAA
CAACAAAAATCAAGTGTGGGAAACGGACTTTTGAGGGCAGGGGAATGTCA
TATACAACAGCATTCGATTGCGACGGCGACGACGACGACACCAGATTCTT
GCTCTGCAACGAGAAAATTTCGACATTGGTCAGCGACATCAACACGGATT
CAGCTTCAGATTCACAACTAGTTCATCAACAACCAAAGAACGAACAAATT
GACACCTCTCCTATGACGATCAACACGATGCCCAACACGATGCCCAACAC
CAATACCAACGCCGGCACGACTTTTGAGGGCAGGGGAATGTCATATACAA
CAGCATTCGATTGCGACGGCGACGACGACGACACCAGATTCTTGCTCTGC
AACGAGAAAATTTCGACATTGGTCAGCGACATCAACACGGATTCAGCTTC
AGATTCACAACTAGTTCATCAACAACCAAAGAACGAACAAATTGACACCT
CTCCTATGACGATCAACACGATGCCCAACACGATGCCCAACACCAATACC
AACGCCGGCACG
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