prot_H-paniculata_contig19148.4805.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19148.4805.1
Unique Nameprot_H-paniculata_contig19148.4805.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length166
Homology
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 3.000e-82
Identity = 131/149 (87.92%), Postives = 142/149 (95.30%), Query Frame = 0
Query:   17 LDPNDVVLEWTKEVPPQPVRAGATLARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHRKAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQAGAAAAQLVADFKIGAAARYPILVISYELYR 165
            L P+ +VLEWT   PPQPV AGA+LARRLHPHQR+GLK+LWECLAGRGGY+GRGAILADEMGLGKTATAIALCTCVLRHR+AECRKAVV+CPSSLV NWANEFRKWCPLGGGAVA++QAGAAAAQLV+DFKIGAAARYPILVISYELYR
Sbjct:  255 LSPDGLVLEWTAGDPPQPVMAGASLARRLHPHQREGLKMLWECLAGRGGYEGRGAILADEMGLGKTATAIALCTCVLRHRRAECRKAVVICPSSLVGNWANEFRKWCPLGGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYR 403          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.270e-71
Identity = 123/149 (82.55%), Postives = 135/149 (90.60%), Query Frame = 0
Query:   17 LDPNDVVLEWTKEVPPQPVRAGATLARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHRKAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQAGAAAAQLVADFKIGAAARYPILVISYELYR 165
            L P  +VLEWT   PPQPV AGA+LARRL+PHQR+GLK+LWECLAGRGGY+GRGAILADEMGLGKTATAIALC CVLRHR+AEC KAVVVCPSSLV+NWANE +   P GGGAVA++QAGAAAAQLV+DFKIGAAARYPILVISYELYR
Sbjct:  258 LSPEGLVLEWTAGDPPQPVIAGASLARRLYPHQREGLKMLWECLAGRGGYEGRGAILADEMGLGKTATAIALCMCVLRHRRAECPKAVVVCPSSLVRNWANEVQSRGP-GGGAVAVDQAGAAAAQLVSDFKIGAAARYPILVISYELYR 405          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: A0A196SG06_BLAHN (RAD54, DNA repair and recombination protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SG06_BLAHN)

HSP 1 Score: 107 bits (266), Expect = 8.300e-24
Identity = 63/138 (45.65%), Postives = 83/138 (60.14%), Query Frame = 0
Query:   34 PVRAGATLARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHRKAEC---RKAVVVCPSSLVKNWANEFRKWCPLGGGAVA---IEQAGAAAAQLVADFKIGAAARYPILVISYELYR 165
            PV     L +++ PHQ++GL  L+ C+ G GG++G G ILADEMGLGKT TAI+L    L            AVV CPSSLV+NW NEFRKW  LG   V    + + G  A + V DF + +  +  +L+ISYE+YR
Sbjct:  230 PVILDPALNQKMKPHQKEGLLFLYNCINGLGGFNGNGCILADEMGLGKTLTAISLIFTALTQSPWATPLITSAVVTCPSSLVENWGNEFRKW--LGRDKVRCLILSEKGEKAEEKVNDFVMQSGLKRVVLIISYEMYR 365          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: A0A4D9CX44_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX44_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.180e-23
Identity = 70/150 (46.67%), Postives = 85/150 (56.67%), Query Frame = 0
Query:   29 EVPPQPVRAGATLARRLHPHQRDGLKVLWECLAGRGGYD--GRGAILADEMGLGKTATAIALCTCVLR-----HRKAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQA-GAA-----AAQLVADFKIGAAARYPILVISYELYR 165
            EVP +PV   A L R L PHQR+G+  LW CL GRG     GRGAILAD+MGLGKT   IAL   + R     HR A+  KAVVVCPSSL+  WA E +KW  +    + ++ A G A     A + V  F   +     +L ISYE YR
Sbjct:  515 EVPTKPVVLEAFLGRILRPHQREGVAFLWRCLTGRGQPSRMGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYR 664          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: A0A8C5Q6U1_9ANUR (RAD54 like n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5Q6U1_9ANUR)

HSP 1 Score: 104 bits (259), Expect = 7.030e-23
Identity = 69/150 (46.00%), Postives = 85/150 (56.67%), Query Frame = 0
Query:   24 LEWTKEVPPQPVRAGATLARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHR---KAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQAGAAAAQL---VADF--KIGAAARYPILVISYELYR 165
            L+  KE  P  V     L + L PHQR+G+K LWEC+ GR      G I+ADEMGLGKT   IAL   +LR     K E  K+VVVCPSSLVKNW NE  KW  LGG    +   G +  ++   +A F  + G     PIL+ISYE +R
Sbjct:  130 LKVDKEKIPVHVVVDPVLVKVLRPHQREGVKFLWECVTGRRIPGSHGCIMADEMGLGKTLQCIALMWTLLRQSPDAKHEIEKSVVVCPSSLVKNWYNEVGKW--LGGAIQPLAIDGGSKEEIDRKLAGFMSQHGVRVPSPILIISYETFR 277          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: A0A812VS04_9DINO (RAD54B protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VS04_9DINO)

HSP 1 Score: 103 bits (258), Expect = 1.000e-22
Identity = 61/138 (44.20%), Postives = 77/138 (55.80%), Query Frame = 0
Query:   34 PVRAGATLARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHRKAEC---RKAVVVCPSSLVKNWANEFRKWCPLGGGA---VAIEQAGAAAAQLVADFKIGAAARYPILVISYELYR 165
            PV     LA  L PHQR+G+K LWEC AG     G G ILADEMGLGKT   I L   +L+          K ++ CPS+LV NW  EF KW  LG       A+ + G  A  +V DF  G ++ YP+L++SYE+ R
Sbjct:  633 PVVVDPHLANVLRPHQREGVKFLWECCAGMRSIKGEGCILADEMGLGKTLQTITLVYTMLKQSVTGAGLASKVIIACPSTLVGNWKKEFGKW--LGSTRCKPAAVTKTGKVAEGVVHDFVHGRSSMYPVLILSYEMCR 768          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: A0A2R7WYK7_ONCFA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WYK7_ONCFA)

HSP 1 Score: 99.8 bits (247), Expect = 1.120e-22
Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 0
Query:   45 LHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLR---HRKAECRKAVVVCPSSLVKNWANEFRKWCPLGG--GAVAIEQAGAAAAQ-LVADFKIGAAAR---YPILVISYELYR 165
            L PHQR+G+K ++EC+ G    +  G I+ADEMGLGKT   I L   +L+   H K E  KA++V PSSLVKNW NE +KW  LGG   A+A+E  G    +  V DF      R   +PILVISYE +R
Sbjct:    5 LRPHQREGVKFMYECVTGVRIENAYGCIMADEMGLGKTLQCITLMWTLLKQSPHAKPEIDKAIIVAPSSLVKNWCNEIQKW--LGGRVNAIAVEGGGTKVVEGQVRDFMSAPPGRRNTHPILVISYETFR 132          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: Q6NVL9_XENTR (DNA repair and recombination protein RAD54-like n=4 Tax=Xenopus TaxID=8353 RepID=Q6NVL9_XENTR)

HSP 1 Score: 103 bits (257), Expect = 1.300e-22
Identity = 71/165 (43.03%), Postives = 91/165 (55.15%), Query Frame = 0
Query:   13 AAVILDPNDV----VLEWTKEVPPQPVRAGATLARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHR---KAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQAGAAAAQL---VADFKIGAAARYP--ILVISYELYR 165
            A V+ +P  +    +L+  KE  P  V     L + L PHQR+G+K LWEC+ GR      G+I+ADEMGLGKT   I L   +LR     K E  KAVVVCPSSLVKNW NE  KW  LGG    +   G +  ++   ++ F      R P  IL+ISYE +R
Sbjct:  115 ALVLYEPPQLSAHDLLKVDKEKVPVHVVVDPVLGKVLRPHQREGVKFLWECVTGRRISGSHGSIMADEMGLGKTLQCITLIWTLLRQSPDAKPEIEKAVVVCPSSLVKNWYNEVSKW--LGGRIQPLAIDGGSKEEIDKKLSGFMNQHGMRVPSAILIISYETFR 277          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: UPI001C349E5F ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C349E5F)

HSP 1 Score: 101 bits (251), Expect = 1.460e-22
Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 0
Query:   16 ILDPNDVVLEWTKEVPPQPVRAGATLARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHR---KAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQAGAAAAQL---VADF--KIGAAARYPILVISYELYR 165
            IL  +D++ +  KE  P  V     L + L PHQR+G+K LWEC+ GR   +  G I+ADEMGLGKT   IAL   +LR     K E  KA+VV PSSLV+NW NE  KW  LGG    +   G +   +   + +F  + G  A  PIL+ISYE +R
Sbjct:  121 ILSAHDLI-KAEKEKLPVHVVVDPVLGKVLRPHQREGVKFLWECVTGRRISESYGCIMADEMGLGKTLQCIALMWTLLRQSPDAKPEIDKAIVVSPSSLVRNWYNEVGKW--LGGRVTPVAIDGGSKDDIDRQLVNFISQRGLRAPTPILIISYETFR 275          
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Match: A0A7S2JIU9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIU9_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 1.640e-22
Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 0
Query:   41 LARRLHPHQRDGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHR----KAECRKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQAGAAAAQ-LVADFKIGAAARYPILVISYELYR 165
            L+R L  HQR GL+ L++CL G   Y+G G ILAD+MGLGKT  ++A+   +L       KA CRKAV++CP+SLVKNWA EF KW       VAI  +G AA +  +  F+   +  + IL+ SYE +R
Sbjct:   39 LSRVLREHQRVGLQFLYDCLMGLREYEGFGCILADDMGLGKTLQSVAVIWTLLTQGGAGGKAACRKAVIICPASLVKNWAAEFDKWLKGRCKYVAIAVSGTAAVRGTLMTFR--GSYEHKILIASYETFR 166          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19148.4805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMS0_ECTSI3.000e-8287.92SNF2-related domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JTI7_9PHAE1.270e-7182.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A196SG06_BLAHN8.300e-2445.65RAD54, DNA repair and recombination protein n=1 Ta... [more]
A0A4D9CX44_9STRA2.180e-2346.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8C5Q6U1_9ANUR7.030e-2346.00RAD54 like n=1 Tax=Leptobrachium leishanense TaxID... [more]
A0A812VS04_9DINO1.000e-2244.20RAD54B protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A2R7WYK7_ONCFA1.120e-2247.69Helicase ATP-binding domain-containing protein (Fr... [more]
Q6NVL9_XENTR1.300e-2243.03DNA repair and recombination protein RAD54-like n=... [more]
UPI001C349E5F1.460e-2243.67(large yellow croaker) hypothetical protein n=1 Ta... [more]
A0A7S2JIU9_9DINO1.640e-2246.15Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 67..164
e-value: 2.6E-16
score: 59.3
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 12..165
e-value: 1.3E-35
score: 124.4
NoneNo IPR availablePANTHERPTHR45629:SF3DNA REPAIR AND RECOMBINATION PROTEIN RAD54Bcoord: 34..164
NoneNo IPR availablePANTHERPTHR45629FAMILY NOT NAMEDcoord: 34..164
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 62..165
score: 10.647
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 30..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19148contigH-paniculata_contig19148:625..4686 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19148.4805.1mRNA_H-paniculata_contig19148.4805.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19148 625..4686 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19148.4805.1 ID=prot_H-paniculata_contig19148.4805.1|Name=mRNA_H-paniculata_contig19148.4805.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
GPSGGGGSGTAAAAVILDPNDVVLEWTKEVPPQPVRAGATLARRLHPHQR
DGLKVLWECLAGRGGYDGRGAILADEMGLGKTATAIALCTCVLRHRKAEC
RKAVVVCPSSLVKNWANEFRKWCPLGGGAVAIEQAGAAAAQLVADFKIGA
AARYPILVISYELYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR038718SNF2-like_sf
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase