mRNA_H-paniculata_contig1914.4803.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1914.4803.1
Unique NamemRNA_H-paniculata_contig1914.4803.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1914.4803.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.940e-37
Identity = 75/161 (46.58%), Postives = 108/161 (67.08%), Query Frame = 3 
Query:    3 FLFEETWLEAGVGTREGDYLLVVDSEGDPHLEKWSTCFRFDTDQARLENIQKLNRQLQPLQKKMEDYECARHAAQQTESAADRKVRKVLQSMPEELVSLLGVESDDAMACLPAAKSMLEGMKKEQADRDGQRARPMRFEEGRLNQEDEARINPIGYIAELG 485
            FLFEE WL+ GVG+RE DY LVVDS GDP L+ WST FRF+TD+ RL +I+++  +L+PL+ K++ +  A HAA   +  A    +   + +P  L S + ++S D  AC+  AK +L+  ++EQ  R  Q+ARP++FE GR+  EDE  I P+GYIA+LG
Sbjct: 1874 FLFEENWLQPGVGSREADYKLVVDSAGDPELQPWSTNFRFETDEKRLTSIREVKARLKPLEDKVDRFNAALHAAVTRQEMALANAKDSARDLPRSLASSIDLDSQDYSACMNEAKRLLKTFEEEQRGRLSQQARPLKFEHGRMRPEDEEAIKPVGYIAQLG 2034
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1914.4803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JXR4_9PHAE1.940e-3746.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1914contigH-paniculata_contig1914:19412..23108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size694
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1914.4803.1prot_H-paniculata_contig1914.4803.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1914 20993..22902 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929464.1569872-UTR-H-paniculata_contig1914:19411..194721622929464.1569872-UTR-H-paniculata_contig1914:19411..19472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1914 19412..19472 +
1691480872.7534282-UTR-H-paniculata_contig1914:19411..194721691480872.7534282-UTR-H-paniculata_contig1914:19411..19472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1914 19412..19472 +
1622929464.169763-UTR-H-paniculata_contig1914:20862..209921622929464.169763-UTR-H-paniculata_contig1914:20862..20992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1914 20863..20992 +
1691480872.7664943-UTR-H-paniculata_contig1914:20862..209921691480872.7664943-UTR-H-paniculata_contig1914:20862..20992Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1914 20863..20992 +
1622929464.229374-UTR-H-paniculata_contig1914:22902..231081622929464.229374-UTR-H-paniculata_contig1914:22902..23108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1914 22903..23108 +
1691480872.8097975-UTR-H-paniculata_contig1914:22902..231081691480872.8097975-UTR-H-paniculata_contig1914:22902..23108Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1914 22903..23108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929464.1858485-CDS-H-paniculata_contig1914:20992..210191622929464.1858485-CDS-H-paniculata_contig1914:20992..21019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1914 20993..21019 +
1691480872.7763608-CDS-H-paniculata_contig1914:20992..210191691480872.7763608-CDS-H-paniculata_contig1914:20992..21019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1914 20993..21019 +
1622929464.199405-CDS-H-paniculata_contig1914:22086..221941622929464.199405-CDS-H-paniculata_contig1914:22086..22194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1914 22087..22194 +
1691480872.7859452-CDS-H-paniculata_contig1914:22086..221941691480872.7859452-CDS-H-paniculata_contig1914:22086..22194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1914 22087..22194 +
1622929464.214431-CDS-H-paniculata_contig1914:22740..229021622929464.214431-CDS-H-paniculata_contig1914:22740..22902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1914 22741..22902 +
1691480872.7971694-CDS-H-paniculata_contig1914:22740..229021691480872.7971694-CDS-H-paniculata_contig1914:22740..22902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1914 22741..22902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1914.4803.1

>prot_H-paniculata_contig1914.4803.1 ID=prot_H-paniculata_contig1914.4803.1|Name=mRNA_H-paniculata_contig1914.4803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MEDYECARHAAQQTESAADRKVRKVLQSMPEELVSLLGVESDDAMACLPA
AKSMLEGMKKEQADRDGQRARPMRFEEGRLNQEDEARINPIGYIAELG*
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mRNA from alignment at H-paniculata_contig1914:19412..23108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1914.4803.1 ID=mRNA_H-paniculata_contig1914.4803.1|Name=mRNA_H-paniculata_contig1914.4803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3697bp|location=Sequence derived from alignment at H-paniculata_contig1914:19412..23108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTTTTGTTCGAGGAGACCTGGCTGGAGGCTGGCGTGGGGACGAGGGAG
GGAGATTACTTGTAAGCCAGAGATTCCTTTTGGTCATAATCCATTGTCCA
GATTTGACGGTGTTTCTGTTTTTTCTGTCATGAGTTCTTTCTCCCGCAAC
AGTTGGCCTTGTTTGCGCGGTATGTGTTGATTTTGTTAGTGGTCGAATTC
CCCACCGTGAAATAAATTGATGGTTGCGGGTAGACGTCTATTTGTCCGCC
CTTTGGGTTCCGATGTGCGCACCGCGTCCCGTAGTTCTTCCACACCGTAA
CACGTGTACCCTCTCGCAAAATTTATCTCTCATTTCGTGATCAGTTTCCA
GCTACGCATGCAGTCTTTATCTGTCAAGAAAATAGTAAATGCTTGCATAT
GTCTGTGGTTATTTCTACCCTACCCGAATTATTCTTACCTCTGCGTTGTG
TTTTTTTTCACCTGAAGTAGATGTATTGTAGGTGGCAAGTGCTTAATTAC
CACCACCTTACGGTCAAGGTACGACGACGCCGAACCCAAATTTAACGTAC
GGCCACACCTCATGGAAATCCCAGCAGCCCGGGTCCCGCAGCCCGCACGG
CCTCTGGAAATGGAATACGGAGCCTAAAAGAGAGTTCGTCGACGCGAGAT
TTTCGTGGCCGAAATAGTCAAAATCAGATAAAAGTAAACCCCTTCAAGCG
CGGGTAGAGGGGAACGAGCCAACACCGCCCGTGCAACCACAGTGATGGAA
CAGCGTAAGGAACTATACTAAAATCAACGATTTGCAGTCAATACCGAGAG
CTAAAGCATGACCTGACTATTTGATGACCACTTCAACGGCAACTACCACT
AGTGGCTAGAAAAAGAAGCCCTGACTTGACCCTAGTCCGTTGCCTTTTGT
CTACACCACAGACACCGTTCCACAGGCCAGACGTACATCCTAGAACGCAA
AAACCCCTGCTAAGTAGATATATCAACCCCGTCGCAGGACGTTGCTCTGT
CTGGACTGATGGATAAGGAATGGAATACGATGACTATTATAATACAGAAT
ATCTGTAAAAACTGTGGTGGTACTCGACTTGAAGAAAATTTCAAGAGAGC
TTTCGGTGATTTCCTTTCTGGAGATGACCATGAACGGTTCGTAGTATATC
ATGGCATCACAATTCATTCGTAAGCGCCACACAAACGTCCGCGTGGGCTC
GCCGATTTCCGAGTGCCTCAAATATGCCTCACCTAGTTCAGTTCGTCCGA
GGTAGGCTATCACCGACCCATTGTCGACAAATGATCAACTGACGCACTAC
TGTTGAATCAGCTGACATGTTTACGTTGAATGTCACCCTGCCCCCCAATA
ACCAGCTCAGATTAACTATCGGCGAAATACCATTGGCATGTACAAATCCC
CCGTCAACTTACCCACCCCTCTTTGGACCAACTACCAAACTGTGACTGTA
GGCTGGTGGTAGACAGCGAAGGAGACCCGCATCTGGAGAAGTGGAGCACG
TGCTTCCGCTTCGATACGGATCAAGCCCGATTAGAGAATATCCAAAAACT
TAACCGGCAGCTACAACCTCTGCAGAAGAAGATGGAGGATTATGAATGTG
CCCGTCACGTAAGACCGAATGCCAGAGGAAAAGAGGCAAACAAGAATATA
AGAAACAATGGCCTCGAGGCTGATATGGATGGGAGCAAGAGGGCGGGGAG
GGGATCAAAATTTGCAGTGGTGTTCAATATTTTAGCATTTGTTTTTGGTT
AGTTTTGTCGGCTTCTGGCAATATTCGGCCATCCGGCGGGGCATGGAGTA
TATATTACAATAGTTTCGGGCAGGTAGCGGGTTAAGCCAATATTAGGCAA
TAGGATGAAGGAGGGGGTGGGTCATCCACCGTTTTTTACAAGACATACAT
ACAGCGTCATGTGATGCTGAGGTTAGTCACTTAACCCCCAATAATTGTTA
AATACACTCATATTTGAAGAGCACGTTCCTGATGTTAGTGGTATTCCTAA
ACCCCGACCCATACTCAACATCTGGAGGCGTCTCTGCCCTTGCGGACCAG
CTTTCTAGCTGTATCCGTCCCTTGAGGATCACTCGTACCTCAGAGACAAG
TCTCGATACATATCAAAACTGCGTGTACTCCATACTGTATGCCTGAACAT
AGACAACATTAGAGCGGAATAGCGCGCTCACGGCAGCCAGTTTACTGTGG
GAGCGTCGTGTTCTTTCACGTGATCGGCGGTAGGACTCGGGGTGGTGACA
GCCTGCCCACGCCCCTGGCCATCAGGTCCGCGTAGACGTAATGCCAAGTT
GCCAAGTTGGACGAATATGCACCATCCCTTGCAATAATTCAAACCTTCTA
GCGATGTAGACCAACTACTCGTTCCTTGTGATTGCAGGTGCCGCCAGCTG
GTGGCTCCTTTTCAAATCTTGCTGCGAGAGCGTGAACTCACCTCTTTCTT
CAACATGGTCATTTGAAGGAGTGTTACTCAATTCTACTGTAGGAGCGTCG
TGTTCTTTTGCAGACAAATCCCACACACCAAAAGGGGAGGGCTGATAGTG
GTGGAGTTGATGAGCCCAACAAATTTCTTGCGTTGTTGGGCGTGATGCTA
TTTCTTGCGCACGCACACAACTATGTCTATGCTGTCCTCTTGGCTGTGGT
GATCGGGTTTACCTGTTGATTTCAGGCGGCCCAGCAGACGGAGAGTGCGG
CGGACAGGAAAGTGAGGAAGGTGCTGCAGTCAATGCCGGAAGAACTGGTG
TCTCTCCTTGGGGTCGAGAGTGACGATGCCATGGTGGGTGACTTGATGCA
GCATGACAAACGACCGATCACATTTGAGTACAAAGTTGAAGCCGTGGTGT
TTTTTCTTGTTTTCCTACACTCGCGTTTGTCATTAGATTATGCGGGACCC
GTGAGACCGCCGGCTGGAACTGTAATGCCTCCATATGTGCCTTGTATCTT
TCATTATTATATAACCCTACAGTAGTGACATTTGATGAATATATTCGACT
TTCAAACATAAATTTGAGCCCCCCCGGCCTCCTCTCCTGTGTGATGTGTT
TTGGATGTCCTCTATCGAGGCGATTTTATGTACTGCCTCACACATGTGAA
AGCATCTCACCGACGTGATATCTACACTGTATGAGTTTCTTGTTACGGCC
GTCATATTTTGTCACTATCGTTATTATTGCTGCTTCTGTTGCCGTTCTTG
ATACAACATTTCTTTTTTTGTTTCCGTACTTGATTTCGTCACTCCCCTTA
CAAGCAAAAAACAATCACGCGTTATGCCATGATACTGTTTTCCCTGATAA
CGCTATGACTTGGAATGTGCAAATCACAGGCATGCCTACCGGCAGCGAAG
AGCATGTTAGAGGGCATGAAGAAGGAACAGGCCGACAGGGATGGTCAAAG
GGCCAGACCTATGAGGTTCGAGGAGGGCAGGTTGAACCAAGAGGATGAGG
CTCGAATAAATCCGATTGGATACATCGCGGAGCTGGGGTAAGTTTCAGCA
TTAGAAGCATGACCCTGCCCTATAAATCTCTTCCGTTCTGTGGGGAAGGA
AGGACGAAGACCTCAAGACTATGAAGAGGTAAACGCCCCTATTACGGGAC
ATCTTCCGTTTCATGTGGAAGGAAGGATAAAGACCTCAAGCTTACTGTGA
AGAGGTAAACGCCACCATTACGGGACCGTTAAAACTTGCGCCGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1914:19412..23108+

>mRNA_H-paniculata_contig1914.4803.1 ID=mRNA_H-paniculata_contig1914.4803.1|Name=mRNA_H-paniculata_contig1914.4803.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig1914:19412..23108+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGATTATGAATGTGCCCGTCACATGGAGGATTATGAATGTGCCCG
TCACGCGGCCCAGCAGACGGAGAGTGCGGCGGACAGGAAAGTGAGGAAGG
TGCTGCAGTCAATGCCGGAAGAACTGGTGTCTCTCCTTGGGGTCGAGAGT
GACGATGCCATGGCGGCCCAGCAGACGGAGAGTGCGGCGGACAGGAAAGT
GAGGAAGGTGCTGCAGTCAATGCCGGAAGAACTGGTGTCTCTCCTTGGGG
TCGAGAGTGACGATGCCATGGCATGCCTACCGGCAGCGAAGAGCATGTTA
GAGGGCATGAAGAAGGAACAGGCCGACAGGGATGGTCAAAGGGCCAGACC
TATGAGGTTCGAGGAGGGCAGGTTGAACCAAGAGGATGAGGCTCGAATAA
ATCCGATTGGATACATCGCGGAGCTGGGGTAAGCATGCCTACCGGCAGCG
AAGAGCATGTTAGAGGGCATGAAGAAGGAACAGGCCGACAGGGATGGTCA
AAGGGCCAGACCTATGAGGTTCGAGGAGGGCAGGTTGAACCAAGAGGATG
AGGCTCGAATAAATCCGATTGGATACATCGCGGAGCTGGGGTAA
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