mRNA_H-paniculata_contig19118.4796.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig19118.4796.1 vs. uniprot
Match: D8LJ91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ91_ECTSI) HSP 1 Score: 436 bits (1120), Expect = 4.870e-148 Identity = 217/292 (74.32%), Postives = 255/292 (87.33%), Query Frame = 1
Query: 1 MQSFAFFIALLATANAKL---LGDGAFKMKFSSVKEEAEKFSHKCREELNEEGPTFTIDVSDHTLGKGVGSLNLEGKFQREVMDNVDCGVVYKFNECRGLPTSVWVSTIQDVGDEMTAHVRADVDVDSRNAVIDCRVSKGRDSVACDFDTADNTVGPLRITKHLDLNGKNVIVQPTLDVQGQTGKCVIAAEVDGDTTSAELTINHSEDSAVLEVCHRLDDSNVISPKVDLKTGDIAVRLNRQLGDERAVKVTAMRENVDWEYFEGAWQVRGNVPLVDVGDS-AISIKRSITL 864
M+S AFF+AL A +A + + +F +F+S+KEEA++FS CR+ LN EGPTFTIDVSDH+L GVGSLNLEG+FQREV+DNVDCGVVYKFNECRG+PTS+WVST QD+GD+MTA++RAD+D+DS+NAVIDCRV+ GRDSVA DFDTAD+T+GPLRITKHLDLNG+ VIVQPT+DVQG+TG+ V+AAE+DGD TSAELT+NH+EDSAVLEVCHRLDD+NVISPKVDLKTGDIAVRLNR LGD RAVK TA RENVDWEY EGAW V+GNVPL G + AIS KRSITL
Sbjct: 1 MKSVAFFVALFAATDAWRTVEVPEPSFGSRFTSIKEEADRFSAACRDALNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNECRGMPTSLWVSTTQDLGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVVAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGAWVVKGNVPLTSNGATGAISFKRSITL 292
BLAST of mRNA_H-paniculata_contig19118.4796.1 vs. uniprot
Match: A0A6H5K004_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K004_9PHAE) HSP 1 Score: 431 bits (1107), Expect = 7.600e-145 Identity = 216/292 (73.97%), Postives = 253/292 (86.64%), Query Frame = 1
Query: 1 MQSFAFFIALLATANAKL---LGDGAFKMKFSSVKEEAEKFSHKCREELNEEGPTFTIDVSDHTLGKGVGSLNLEGKFQREVMDNVDCGVVYKFNECRGLPTSVWVSTIQDVGDEMTAHVRADVDVDSRNAVIDCRVSKGRDSVACDFDTADNTVGPLRITKHLDLNGKNVIVQPTLDVQGQTGKCVIAAEVDGDTTSAELTINHSEDSAVLEVCHRLDDSNVISPKVDLKTGDIAVRLNRQLGDERAVKVTAMRENVDWEYFEGAWQVRGNVPLVDVGDS-AISIKRSITL 864
M+S AFF+AL A +A + + +F +F+S+KEEA++FS CR+ LN EGPTFTIDVSDH+L GVGSLNLEG+FQREV+DNVDCGVVYKFNE RG+PTS+WVST QD+GD+MTA++RAD+D+DS+NAVIDCRV+ GRDSVA DFDTAD+T+GPLRITKHLDLNG+ VIVQPT+DVQG+TG+ VIAAE+DGD TSAELT+NH+EDSAVLEVCHRLDD+NVISPKVDLKTGDIAVRLNR LGD RAVK TA RENVDWEY EG W V+GNVPL G + AIS KRSITL
Sbjct: 81 MKSVAFFVALFAATDAWRTVEVAEPSFGSRFTSIKEEADRFSAACRDVLNGEGPTFTIDVSDHSLSDGVGSLNLEGRFQREVVDNVDCGVVYKFNERRGMPTSLWVSTTQDLGDDMTANLRADMDIDSKNAVIDCRVNSGRDSVAVDFDTADSTMGPLRITKHLDLNGRKVIVQPTVDVQGKTGEVVIAAELDGDVTSAELTVNHAEDSAVLEVCHRLDDNNVISPKVDLKTGDIAVRLNRSLGDARAVKFTAQRENVDWEYLEGPWVVKGNVPLTSDGSTGAISFKRSITL 372
BLAST of mRNA_H-paniculata_contig19118.4796.1 vs. uniprot
Match: A0A836CCC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC7_9STRA) HSP 1 Score: 264 bits (675), Expect = 1.670e-81 Identity = 125/239 (52.30%), Postives = 177/239 (74.06%), Query Frame = 1
Query: 148 GPTFTIDVSDHTLGKGVGSLNLEGKFQREVMDNVDCGVVYKFNECRGLPTSVWVSTIQDVGDEMTAHVRADVDVDSRNAVIDCRVSKGRDSVACDFDTADNTVGPLRITKHLDLNGKNVIVQPTLDVQGQTGKCVIAAEVDGDTTSAELTINHSEDSAVLEVCHRLDDSNVISPKVDLKTGDIAVRLNRQLGDERAVKVTAMRENVDWEYFEGAWQVRGNVPLVDVGDSAISIKRSITL 864
GP F ++++D +L G GSLNLEG++ RE++DNV+ GV Y +N RGLP+S+WVST D+ D+ +A+ DV S+ VI+ R+ +G D ++ DFDT N GPL++ K LD+NG+ + ++PT++V+ +TG+ VI EVD D T+AELT+N +++SA LEV HRLDD NV+SPKV+LK+GD++VRLNR L + ++VTA R+NVDWE+ E AW V+GN+PL D G S IS KRSI L
Sbjct: 21 GPVFHVNINDPSLKDGAGSLNLEGEYSRELVDNVNAGVKYDYNANRGLPSSLWVSTSADIDDDTKLCAKAEYDVKSKATVIEARLERGSDGISIDFDTGSNEAGPLKLRKVLDMNGRRLTLEPTINVRDRTGELVINTEVDEDKTTAELTLNQADESASLEVSHRLDDFNVVSPKVNLKSGDVSVRLNRALDNGGVIEVTADRKNVDWEFNENAWTVKGNIPLEDTGASTISFKRSINL 259
BLAST of mRNA_H-paniculata_contig19118.4796.1 vs. uniprot
Match: A0A836CPR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR3_9STRA) HSP 1 Score: 240 bits (613), Expect = 2.930e-72 Identity = 116/239 (48.54%), Postives = 168/239 (70.29%), Query Frame = 1
Query: 148 GPTFTIDVSDHTLGKGVGSLNLEGKFQREVMDNVDCGVVYKFNECRGLPTSVWVSTIQDVGDEMTAHVRADVDVDSRNAVIDCRVSKGRDSVACDFDTADNTVGPLRITKHLDLNGKNVIVQPTLDVQGQTGKCVIAAEVDGDTTSAELTINHSEDSAVLEVCHRLDDSNVISPKVDLKTGDIAVRLNRQLGDERAVKVTAMRENVDWEYFEGAWQVRGNVPLVDVGDSAISIKRSITL 864
GP I+V D +L +GVGSLNL G+ RE+++NV+ G+ Y +N RGLP+S+WVST +V D++ +A+ D+ S++ +I+ R+ +G D +A DFDT N GPLRI K D NG+ ++V+P +V+ +TG+ VI +E+D D T+AELT++ + DSA LEV HRLD+ N++ PKVDLK GD++VRL R L + + VTA + N+DWE E +W V+GN+PL D S IS KRSI+L
Sbjct: 22 GPVLHINVDDPSLSQGVGSLNLSGEVSRELVENVNAGLKYDYNTNRGLPSSLWVSTSAEVDDDVYVSAKAEYDLKSKSTIIEARLERGDDEIAIDFDTLTNEAGPLRIRKVFDANGRRLVVKPKFNVRDRTGELVINSEIDSDITTAELTLDQATDSASLEVSHRLDEYNIVCPKVDLKNGDMSVRLVRALENGGVLGVTADKRNIDWELEEDSWTVKGNIPLEDTQRSTISFKRSISL 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19118.4796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19118.4796.1 >prot_H-paniculata_contig19118.4796.1 ID=prot_H-paniculata_contig19118.4796.1|Name=mRNA_H-paniculata_contig19118.4796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=289bp MQSFAFFIALLATANAKLLGDGAFKMKFSSVKEEAEKFSHKCREELNEEGback to top mRNA from alignment at H-paniculata_contig19118:2..3693- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig19118.4796.1 ID=mRNA_H-paniculata_contig19118.4796.1|Name=mRNA_H-paniculata_contig19118.4796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3692bp|location=Sequence derived from alignment at H-paniculata_contig19118:2..3693- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig19118:2..3693- >mRNA_H-paniculata_contig19118.4796.1 ID=mRNA_H-paniculata_contig19118.4796.1|Name=mRNA_H-paniculata_contig19118.4796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at H-paniculata_contig19118:2..3693- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |