mRNA_H-paniculata_contig1910.4787.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1910.4787.1
Unique NamemRNA_H-paniculata_contig1910.4787.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 1.580e-117
Identity = 182/235 (77.45%), Postives = 207/235 (88.09%), Query Frame = 3 
Query:   69 SASMSDTESSPAGD-GVVSNAVLLRVSAKREAVLRDMLAFSSDGEGMDGPQVDWRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIFEEN 770
            S S+SD+ES PA +  +VSNAVLLRV+A+REA+LRDMLAFSSDGE MDGPQVDWR+IK  DG++LWRA VPGTVWCMIRTR A+ APP+ VL YLL+D+CIP YDELF KIEV+E++D TS FKRT YKPIWPTAPRDFSLLSSWG LEDGT YLLNRS+DHPMNPPVKG VRG+VMLCGFLMVPR  E GGGC +TMIVHTDLGG+LPA+ILN LST+SPWRLVQRLR+ FE +
Sbjct:  863 SGSLSDSESVPARETAMVSNAVLLRVAARREAMLRDMLAFSSDGECMDGPQVDWRIIKDSDGLKLWRATVPGTVWCMIRTRAAVTAPPREVLTYLLNDSCIPDYDELFAKIEVVESIDETSVFKRTSYKPIWPTAPRDFSLLSSWGTLEDGTTYLLNRSVDHPMNPPVKGHVRGIVMLCGFLMVPRARESGGGCVITMIVHTDLGGNLPATILNRLSTSSPWRLVQRLRSAFESS 1097
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 382 bits (982), Expect = 1.550e-116
Identity = 190/260 (73.08%), Postives = 215/260 (82.69%), Query Frame = 3 
Query:   69 SASMSDTESSPAGD-GVVSNAVLLRVSAKREAVLRDMLAFSSDGEGMDGPQVDWRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIFEENAPTPAAAPVASMVTAPAPVGRADEQ 845
            S S+SD+ES PA D  +VSNAVLLRVSA+REA+LRDMLAFSSDGE MDGPQVDWR+IK  DG++LWRA VPGTVWCMIRTR A+ APP+ VL YLL+D+CIP YDELF KIEVIE++D TS FKRT YKPIWPTAPRDFSLLSSWG LEDGT YLLNRS+DHP+NPPVKG VRG+VMLCGFLMVPR  E GGGC +TMIVHTDLGG+LPA+ILN LST+SPWRLVQRLR+ FE +   P+ A  A           AD+Q
Sbjct: 1193 SGSLSDSESVPARDTAMVSNAVLLRVSARREAMLRDMLAFSSDGECMDGPQVDWRIIKDSDGLKLWRATVPGTVWCMIRTRAAVTAPPREVLTYLLNDSCIPEYDELFAKIEVIESIDDTSVFKRTSYKPIWPTAPRDFSLLSSWGTLEDGTTYLLNRSVDHPLNPPVKGHVRGIVMLCGFLMVPRARESGGGCVITMIVHTDLGGNLPATILNRLSTSSPWRLVQRLRSAFESSDCQPSRAQKAEQAXXXXXXXAADDQ 1452
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A835YHQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ7_9STRA)

HSP 1 Score: 275 bits (703), Expect = 6.770e-81
Identity = 130/209 (62.20%), Postives = 159/209 (76.08%), Query Frame = 3 
Query:  141 VSAKREAVLRDMLAFSSDGEGMDGPQVDWRLIKQG--DGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIF 761
            + AKREA LRD+L  +SDGE MDGPQ DWRL++ G  DGVRLW+   PG+ W MIRTR  L APP  VLD LLD+  I  YD+LFD I V+  VD+ + FKRT YKPIWPTAPRDFSLLSSWG L+DG+AYL+NRS+DHP  P VKGFVRG +M+CGFLMVP  P    GCT+TM+VHT+LGG+LP +I+N +ST +P  +  +L+ IF
Sbjct:  545 LEAKREAALRDLLVLASDGECMDGPQADWRLVRDGGDDGVRLWKCAQPGSAWSMIRTRARLAAPPSAVLDLLLDEARIAEYDDLFDAIAVVARVDARAAFKRTAYKPIWPTAPRDFSLLSSWGTLDDGSAYLVNRSVDHPDCPEVKGFVRGQLMMCGFLMVPAAPR---GCTLTMVVHTELGGNLPPAIVNKVSTGAPAVVSAKLQRIF 750
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A7S2V6S8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6S8_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.080e-29
Identity = 67/191 (35.08%), Postives = 105/191 (54.97%), Query Frame = 3 
Query:  210 GPQVDWRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSW---GALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPR--PPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIFEE 767
            G +  W+L K     ++W+ +V  T W  IRT   + A P  +L  +LD+  +  YD LFDKI+ ++  D  S  +   YK IWPT+PRDF   ++W   GA  +G   + ++S+D    P  +   RG V   G+ ++P   P  G  G  + M  H DLGGS+PASI+N LS++ P  ++ +L+ I ++
Sbjct:   30 GDKKGWKLAKSRSTAKVWKRKVNWTPWSAIRTWALIPASPDFLLKLILDNDRVSEYDSLFDKIQDVDKPDGHSVVRHLKYKAIWPTSPRDFITYTTWKRVGAKREGWV-IASKSVDLTKGPSSRKHTRGNVYSFGYSLMPTTMPDTGEPGTVLRMTAHMDLGGSMPASIINFLSSSQPLGVMVKLQDIAQK 219
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A067C6Z9_SAPPC (START domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C6Z9_SAPPC)

HSP 1 Score: 121 bits (303), Expect = 3.440e-28
Identity = 66/199 (33.17%), Postives = 111/199 (55.78%), Query Frame = 3 
Query:  165 LRDMLAFSSDGEGMDGPQVDWRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIF 761
            + D+LA  S     D     W  +K  DGV + R  V G+ W  I+  T +      +   L D + +  +DE+ D   VIEA+  +++ +    KP++PT  RDF +++S   L+DG+  +  +S++H   P  K FVR    + G+++ P  P     C++T+IVH DLGG +PA+++N LS +SP +L++RLR ++
Sbjct:   31 ISDILAKDSG----DDKSTTWSHVKDNDGVSIDRGIVDGSAWNAIKATTTVDCAADDLAAKLSDASQMHIFDEMTDNCRVIEALKESTSIRYVQAKPVFPTTARDFLVVTSQQHLDDGSIVIGTKSVEHDSVPVDKHFVRAHTHVSGYIVRPLTPT---SCSVTLIVHMDLGGYMPAAVINLLSVSSPIKLMKRLRQLY 222
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A6G0WBN4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBN4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.240e-27
Identity = 68/182 (37.36%), Postives = 105/182 (57.69%), Query Frame = 3 
Query:  225 WRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVD-STSTFKRTCY-KPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIFE 764
            W  +K  +G+ ++R  V G+ W  +  +  +  P   + + L D   + T+DE+     V+E VD  T T  R    KP++PT  RDF +++S   LEDGT  + +RSI+HP  P  KGFVR    + G+L+ P        C +T+IVH DLGG LPA ++N L+ +SP +L++R RT++E
Sbjct:  519 WNEVKSSEGITVYRGVVEGSDWNAVMAKGVINCPAGFLAEILQDIAEMTTFDEMTASCRVVELVDLPTKTSVRYAQAKPVFPTLARDFVVITSEKRLEDGTIAIASRSIEHPTVPEAKGFVRAHTHISGYLVKPLADT---QCEVTLIVHMDLGGMLPAVVINILAVDSPLKLLKRFRTLYE 697
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A7S2UXV3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV3_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.250e-26
Identity = 71/211 (33.65%), Postives = 113/211 (53.55%), Query Frame = 3 
Query:  153 REAVLRDMLAFSSDGE-GMDGPQVDWRLI--KQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPP-VKGFVRGVVMLCGFLMVPRPPEGGGGCT-MTMIVHTDLGGS-LPASILNHLSTNSPWRLVQRLRTIFEE 767
            RE +L D+L  ++DG  G++     W  +  +Q  G+ +    V G+ W   R    + A P  V   +++D  I  YDE+F  I++IE V+  +  + + YKPIWPTAPRDF ++++W  L DG   +  RS++HP+     K  VR  V+  G+++ P   E G   T  T+I+HTD+    LPA+ +N  +   P   VQ ++ I  E
Sbjct:  197 RELMLTDLLFLAADGPMGVESGGKPWDHVHYEQDGGIHVSTIVVEGSQWQCFRVTGRMQAAPMDVCSLVINDARIGEYDEMFGSIQMIERVNERAAIRHSYYKPIWPTAPRDFVIITTWEPLPDGRVVVATRSVEHPLVASRTKDHVRARVLCAGYVLEPVVLEDGRVETDCTVIIHTDVSCDWLPAAFVNPFTNTRPVGYVQAMQRICRE 407
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A485L016_9STRA (Aste57867_14200 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L016_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.940e-24
Identity = 71/219 (32.42%), Postives = 115/219 (52.51%), Query Frame = 3 
Query:  126 AVLLRVSAKREAVLRDMLAFSSDGEGMDGPQVDWRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDS-TSTFKRTCY-KPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIFEENAP 776
            AV L   A+   +L D +A S            W  +K  DG+ ++R  V G+ W  ++    +    + +   L D + + T+D++     V+E VD+ T T  R    KP++PT  RDF +++S   LEDGT  + +RSIDHP  P  K F+R    + G+L+ P   +    C +T+IVH DL G +PA ++N L+ +SP +L++R R ++    P
Sbjct:  256 AVYLSHGAESVRLLLDKVAPSPS-------DTTWAAVKTVDGITVYRGLVHGSEWNAVKAIGTVECDAKTLAGILQDVSEMTTFDDMTASCRVVEHVDAATKTSVRYAQAKPVFPTTARDFVVITSEKRLEDGTIAIASRSIDHPSVPVTKHFIRAHTHVSGYLIRPVSAD---ACEVTLIVHMDLAGMIPAMVINILAVDSPVKLIKRFRDLYGRRGP 464
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BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: W4GJH7_9STRA (START domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJH7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.660e-24
Identity = 61/201 (30.35%), Postives = 105/201 (52.24%), Query Frame = 3 
Query:  168 RDMLAFSSDGEGMDGPQVDWRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSWGALED-GTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIFEE 767
            ++ +   +D        + W L+KQ DG+ + R  V G  W  I+    +    + + D L D   + ++D   D  +V++ VD  +       K ++PT  RDF ++++ G L D  T  + +RS++H   P    +VR    L G+L+ P  P     C +TM+VH +LGGSLP+ I+N L+ ++P  L+ +LRT++ E
Sbjct:   20 QESIKMLTDRASSKDTSIKWSLVKQYDGIDISRGVVEGNDWNAIKAVGIVRCAARFLADRLTDPNEMKSFDNNTDVCDVLDDVDDHTKVLHVRAKAVFPTTARDFVVVTAIGHLADKSTIVIASRSVEHAHAPIDPCYVRATTYLSGYLLRPTSPS---SCEVTMLVHMNLGGSLPSFIINMLAVDAPIHLLGKLRTLYAE 217
[Close]
BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Match: A0A067CAV6_SAPPC (START domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAV6_SAPPC)

HSP 1 Score: 107 bits (267), Expect = 3.110e-23
Identity = 60/181 (33.15%), Postives = 98/181 (54.14%), Query Frame = 3 
Query:  225 WRLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTYDELFDKIEVIEAVD--STSTFKRTCYKPIWPTAPRDFSLLSSWGALEDGTAYLLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDLGGSLPASILNHLSTNSPWRLVQRLRTIF 761
            W  +K  DGV + R     + W  I+  T +      +   L D   +  +DE+ D   +IEA++   T T +    KP++PT  RDF +++S   LEDG+  +  +S++H   P  K FVR    + G+++ P  P     C++T+IVH DLGG +PA ++N LS  SP +L++R R ++
Sbjct:   36 WSHVKDTDGVSVDRGINAHSPWNAIKATTTVHCSANDLASKLNDPQQMHIFDEMTDNCRIIEALNPAETKTIRYVQAKPVFPTTARDFLVVTSEQRLEDGSIVIGTKSVEHDSVPVSKHFVRAHTHVSGYIIRPLTPT---SCSVTLIVHMDLGGYMPAYVINLLSVASPIQLLKRFRVLY 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1910.4787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSJ0_ECTSI1.580e-11777.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K079_9PHAE1.550e-11673.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHQ7_9STRA6.770e-8162.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V6S8_9STRA2.080e-2935.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067C6Z9_SAPPC3.440e-2833.17START domain-containing protein n=2 Tax=Saprolegni... [more]
A0A6G0WBN4_9STRA1.240e-2737.36Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A7S2UXV3_9STRA8.250e-2633.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485L016_9STRA1.940e-2432.42Aste57867_14200 protein n=1 Tax=Aphanomyces stella... [more]
W4GJH7_9STRA5.660e-2430.35START domain-containing protein n=5 Tax=Aphanomyce... [more]
A0A067CAV6_SAPPC3.110e-2333.15START domain-containing protein n=2 Tax=Saprolegni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1910contigH-paniculata_contig1910:106..5810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.1
Seed ortholog evalue2.6e-103
Seed eggNOG ortholog2880.D7FSJ0
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Exons5
Model size1410
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929462.134221-UTR-H-paniculata_contig1910:105..4451622929462.134221-UTR-H-paniculata_contig1910:105..445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1910 106..445 -
1691480871.9058113-UTR-H-paniculata_contig1910:105..4451691480871.9058113-UTR-H-paniculata_contig1910:105..445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1910 106..445 -
1622929462.1936858-UTR-H-paniculata_contig1910:4511..45221622929462.1936858-UTR-H-paniculata_contig1910:4511..4522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1910 4512..4522 -
1691480871.948764-UTR-H-paniculata_contig1910:4511..45221691480871.948764-UTR-H-paniculata_contig1910:4511..4522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1910 4512..4522 -
1622929462.203905-UTR-H-paniculata_contig1910:5744..58101622929462.203905-UTR-H-paniculata_contig1910:5744..5810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1910 5745..5810 -
1691480871.9565957-UTR-H-paniculata_contig1910:5744..58101691480871.9565957-UTR-H-paniculata_contig1910:5744..5810Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1910 5745..5810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929462.1464727-CDS-H-paniculata_contig1910:445..9431622929462.1464727-CDS-H-paniculata_contig1910:445..943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 446..943 -
1691480871.918504-CDS-H-paniculata_contig1910:445..9431691480871.918504-CDS-H-paniculata_contig1910:445..943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 446..943 -
1622929462.1560326-CDS-H-paniculata_contig1910:1290..14201622929462.1560326-CDS-H-paniculata_contig1910:1290..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 1291..1420 -
1691480871.926246-CDS-H-paniculata_contig1910:1290..14201691480871.926246-CDS-H-paniculata_contig1910:1290..1420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 1291..1420 -
1622929462.1656916-CDS-H-paniculata_contig1910:1664..18881622929462.1656916-CDS-H-paniculata_contig1910:1664..1888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 1665..1888 -
1691480871.933847-CDS-H-paniculata_contig1910:1664..18881691480871.933847-CDS-H-paniculata_contig1910:1664..1888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 1665..1888 -
1622929462.1777399-CDS-H-paniculata_contig1910:4370..45111622929462.1777399-CDS-H-paniculata_contig1910:4370..4511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 4371..4511 -
1691480871.9412582-CDS-H-paniculata_contig1910:4370..45111691480871.9412582-CDS-H-paniculata_contig1910:4370..4511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 4371..4511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1910.4787.1prot_H-paniculata_contig1910.4787.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1910 446..4511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1910.4787.1

>prot_H-paniculata_contig1910.4787.1 ID=prot_H-paniculata_contig1910.4787.1|Name=mRNA_H-paniculata_contig1910.4787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=331bp
MSDTESSPAGDGVVSNAVLLRVSAKREAVLRDMLAFSSDGEGMDGPQVDW
RLIKQGDGVRLWRAQVPGTVWCMIRTRTALVAPPQVVLDYLLDDTCIPTY
DELFDKIEVIEAVDSTSTFKRTCYKPIWPTAPRDFSLLSSWGALEDGTAY
LLNRSIDHPMNPPVKGFVRGVVMLCGFLMVPRPPEGGGGCTMTMIVHTDL
GGSLPASILNHLSTNSPWRLVQRLRTIFEENAPTPAAAPVASMVTAPAPV
GRADEQGPPGEGQSGSSQGPRRVGYALSEGEGRTADGLPGQGQAQEAAAA
LVVSAPVGGGAGARGDSGEGDGLVQQQARL*
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mRNA from alignment at H-paniculata_contig1910:106..5810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1910.4787.1 ID=mRNA_H-paniculata_contig1910.4787.1|Name=mRNA_H-paniculata_contig1910.4787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5705bp|location=Sequence derived from alignment at H-paniculata_contig1910:106..5810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGGGGACGGTGGAGCTGCGGACGGGGAGACGAGTGCGCCGGATGAC
TTGGGCATTGGTGAGGGTAAGCGGGTTGTGGGTTGTGGGTTGATGAGCCA
TGTGTTTGTAATTGTATACCTGTTGTGCCCGTGAAGAAGACAAGCGTAAC
TAGTCTGTAGTGTTGCTCGTTTTGTATGGATGTGTATTGGTCATTCGAAA
CGGTGTTTCAAGTATCGGTTGGCGAAGCTAAGCTGTACTGTCTTGTGTAC
TGCTTGCTGTATGTGTTTATGAATAACATTATGCTCTATTGTGTTGTACG
GTGCCGTGTGATATTAACTTCTTTTGAGTTTTTTTTTTTTGTTTTGTTGA
GGGACGATAGACAACAAGAATAGGTTGTTTGTCCTGGTGGTGCCTTCCCC
ATCGTGAAGAAAAGGACAACACACAAGTTTGAGTTCTGCAACCTGCAGTA
GGCACGAGCTGTTGAACACAAAACGTGATCCTGTTTGTGTTGTGTCGTGT
TGTTTTGAAAGTGGTGTTGAATGGTACACTAGGTAGTGTCGAGATAACAG
GCCTTGTGGTGACCTCGGCGTGATAAGCATACGTGCATCGAGTTCTAAGA
TGAAAAAAATACTGCCAGCGTCGCCGTTTTCACTAAGTTTGTCCCCCCCC
CCCCTCTAAGTTTATTCAGTTTGTGGATAAGTGTCATAATCCAGAAGCTT
GAAGATGCTGAGCGTACCTCCGTTTTGTTTTACCCATTTTTGTCATGTTT
TCTACAGTAAATTGTTCATATCTGCTTGTTCTTTTGACTTGCTCCTTAGT
ACTCTATGGTACGATTCCAAACCGCATTCTCATAGTGTAGACGCCGCCTT
CGTGGTGAAGCTGTCCTTAGCAATTGATGCGTGTGTGTGTGCGTCCCGCG
GGCGCGCGCTAAGCTTGAACTAGGAGATGGAACTTGGCCTGAAAGGGTTA
GCGTTGATTAGGTAGGATAGGTGAAATATTTTTTCAGTCACGTTCGCATT
TGGCAAAATAGGAAAGAGCGATTGGCCATCGGAAATCGCTCTAATAGGGA
GGGAGCTCCGTCCTCTCGAGGATGCGTAGTCAAACAATGATAAATACCTC
TAGCCCCGAGTTCCAAAAAAGAATCCCGATCTTTTGTGCCCCCCCCCCTC
CCTTATTGACATAATTGCTCTGATAAGTGCATACAACTGAACTCGAGGTC
AGCTTCATAACCTCAATACGGGTACAACGGAATTACTATATGAGTGTCAC
ACCCCATCTCCCTTCTTTCATTTCTTCCATGCTCTTAGGATCGGCTTCCA
TGTCCGATACCGAGTCTTCTCCGGCGGGCGACGGTGTGGTTTCTAACGCG
GTACTGCTCAGGGTTTCCGCTAAGAGAGAGGCGGTTTTGCGTGACATGCT
GGCGTTTTCTAGCGACGGCGAGGGTATGGACGGTCCACAGGTGCGACTTT
GGCAAATTCAACGATGCTAGTACTATTAGTAGTACATGTTTTGTGGGTAT
TTACTTTGAGCCTTCGTCCAGTCAAAGGGATTGATTGCTCTCTGCTGCAA
GAGTTTTGTGAGAGTCCGTTCTTGTATTTTTCTGGCGTGGTCTGATTGTT
GATCGTCGCAATGGCAGTGGTCCTTGACCTTTCACTCACACTAAAATTTG
ATTTGAACGACGAATAAACGCCATGTTTGTAAACATGCGAGTAAGTGAAT
GGGCATCTGTGGGATGGATACGGGTTTTTGTTTTTTGTTTTTTTTTCGTC
GCTAGTCAGTTCTCTTAACGTACATATACACATTCATCAGGGGACATTTT
CTCCAATCATTTCGTACCGGGAAAACATGTAGAGAGGTACCGACATCCAT
GTACATTGCTAAAGCTTTAAGTGGTGGACTTTCAAACGACACACCTACTT
TACAGAACGCCTTACTTGACTAAGTGCATCAAAAATGTTAACTACTCCCT
CGATTCAAGGCTCGAATTTTGAATTTCAAAACAGCGCTCACCATATTCCT
TTTTCGAACCTTGCTGGGGTACCAAAATATTATTAAAATTTATATGTGGT
AAAAATGCCTGTGAAGGGGAAAGGGAACAATAGTCGTCAGGTTATACCTT
ATACTGCCATCAAGTCCAACGTTGATGAGGATCGTGGAACCATTTTGGTG
CAAACGGAATCGGCGAACGGAAAGAGCTTTTTGCCTGACCTTCCGGTGGT
TAAAAAAAAGAAAAAAAAAAACGGAATCGGCGAAAATACTTGTGGTAATG
ATGTTTATTCAGCAGTAGTAACATCGCAACGAGGATTCCGACGAAAAAAC
GTTTTTTTTTTTTTTGTTTGCTCTGGATTCCGCCGTGAAAATTCAGACTT
GACTTGAATCGTTCCTATCCTACGCGCCCTCTTGGGTACCATATCATTCA
TGTACATCGATGACAAGTGCAGATTCCAAATTTGACGTGAAAAAATCGGT
GAATTACCAACACTGCCCTAAAAAATGGCGAGTGGAGAGTAGATGGGTAC
ACCTCCTGCCCTTGAGGGCACATCTTGTGGGCGTCGAGAACGTTGTCATT
GTTGTCGTGAAGTTTTTTTTTTAACGTTTACCGAGTGTTTTGGTCCAGGG
AGACAGATTTCGTTATCCATGCCCTCTGCCCCGAGAATTATTCATTACCT
CACTGAGAGCATCGTTGAGATGAGATACTCTACCGAATAATGTAATAATG
AGAAAGCAGCAATGGACTTAATGATGACAGTATCGTAGACAGTATCGCAG
ATGTCCAATACTGGTGATTCGGGGTAAAATAATAATCGGATCATATTCTT
GTTGACTGAGAAGCAGCCAGGATGTGTTAGTAAAATAAATTGATAACAGA
GAAGGATCTAGGAATGATGCATGTGACATATCGGATGGTTAACATTAGTT
CGAGAAGTGGATTTTAGTGACCGGAGTGTTGCGAGACGTTACGCGGGACA
TGGGGAAATAAGATGATACCGTAACGAGAACAGGGAGTGCACACTAGAAT
CACCACCCACTACCGCTCACTCTTGTTTTTTCTCACCCAAGACGCCGATA
AGCCTGAGTTCCCAGCCTAAAAAGTGATTTTAGGTGTCGGCAGAGTTGAT
TCCAGTGTGAGTAGGTCATCTGTTGGATTGACTGCGAGAGGACCACGGGT
GCTGTATTGGATACCAGGTGGAATCGGGTTTACGTTTGTATGAGAAAGGA
AATTGAAGAGGAAGGAAACCGTACAGAAACTTGTTGAGTAAAACTACTGC
CCAGGACACGCCAAAGACGGTCACGTCTGAGGAAGGAGGCGTGTCATAGA
GTCAGGGAACCATCAACAACTATGTGTAGGCCACTTTTCATTTTTTCCAG
GCGTGGTTTAGTTTTCGTAAAATGCCCTCCTGCCAAAACTTTAAGGAGGA
AAAAGACGAAACAGATCCAGCTTGGCTGCGTCAGAAGCTTGCGTGTATCC
GTAAAAACGTGTTATGAGGCGTTGGTCACACAAGGTTTCGATTTCATCAT
GTGTATTTTTCTATCCATGATTGTATGTTGCAGGTGCTCAGTTTTACTTT
TACAGCCAAATAGATCAAATTTCCGACGCCCATAAGATGAGGTCTAATTT
GTGGGGGAAAAAAACAAACAAATGTCTGTCTGATGCGGAAAAAAGTGGTT
CATGACACGAATTGATATATTCTCCAGTCTGATGAAGGGGGAAAAAAGAC
TGTATGCAAAAAAATACGGAAAAAAAAATGCGTGTGTCATGATTTGCCAA
CCCCCCCCCCCCTAGTTTGATCAGTTTATGTATATTTTATCCAGCAGGTT
AAGATTCTGAATACATCTTTATTTCATTTTTCGGTTGTTTTCACATTTTC
TACAATGCAGTAGTTTATGCCTATCTGCTTTTACTATTGATCTGCGCTTT
ACCTGCCAACCCGCTGAGCCAGGTGGACTGGCGGCTAATCAAGCAGGGGG
ACGGGGTGAGGCTGTGGAGAGCGCAGGTGCCGGGCACGGTCTGGTGCATG
ATCCGTACGCGCACCGCGTTGGTGGCGCCGCCGCAGGTGGTGCTAGACTA
CTTGCTCGACGACACGTGCATCCCGACCTACGACGAGCTGTTCGACAAGA
TAGAGGTCATCGAGGCCGTCGACAGCACCAGCACTTTCAAGCGAACGTGA
GAGACTTGGAACAATAGAGAGGAACGTTTCATACCATATGAGTGTTACTG
TAAGCTTGTTCAAGTTTTGTTGCTCTCTTGTTGTTTCGGGGTTTGTTGAT
GTTGATGTTGATGTGGTGGTGGTGATGGTGATGGTGATGTAGCCTGAGGC
GCGCATGCCCGCGAGAATGAGAACAGCTGCTCTTGGGTCATTGTCCTAAT
ATCTATTCCCCTCGGCGATGGTCTTGTGTGTGTCCGTCAGGTGCTACAAG
CCCATCTGGCCCACGGCGCCGCGAGACTTCTCTCTGCTGTCCTCGTGGGG
TGCACTCGAGGACGGTACGGCATACCTTCTCAATCGCTCCATCGATCACC
CGATGAACCCTCCAGTAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTCA
GTTGATGCAGTGTGTGTCGGATGTGTTTTTTGTTTACGCGGAGGGCAATA
TCTCGTTGTCTGGTCTCTCCCTTTTTTCACTAGATTTCGACTTTTACGGT
TTTTTGTCCTTTGTTTCGTTCGTGCACATCGACATGGATGCAATGATGGG
GGTTGGTAGATGTTTTGCAGCTTGTGATGCCTGAATGTCCAAAAACGTCC
AACACAGGTGTGGTGCAGAGTTTTTCCACTCTGTAAGTAGGCCAACAGAT
CACAGGCAATGCGAAGACAAAAAAAGTCCCCTCCCTCCCTCCCCTAAATA
ATAACACCCAAAAACAGGGCTTCGTCCGCGGGGTGGTGATGCTGTGCGGG
TTCCTCATGGTACCCCGCCCACCCGAAGGGGGAGGAGGGTGCACCATGAC
GATGATCGTTCACACGGACCTCGGCGGCAGCCTGCCGGCCAGCATCCTTA
ACCACCTCTCCACTAACAGTCCCTGGCGCCTTGTGCAGCGCTTGCGTACC
ATCTTCGAGGAAAATGCCCCAACCCCAGCGGCTGCTCCCGTTGCATCGAT
GGTGACTGCCCCTGCACCTGTGGGAAGAGCGGATGAGCAGGGACCCCCTG
GGGAAGGGCAATCGGGCAGCAGCCAGGGCCCGCGACGGGTAGGATATGCT
CTATCAGAAGGAGAGGGGAGGACTGCCGATGGACTGCCGGGGCAGGGACA
GGCGCAGGAAGCCGCCGCCGCACTGGTGGTCAGCGCGCCGGTTGGTGGGG
GTGCGGGTGCGAGGGGAGACAGTGGAGAGGGCGACGGGTTGGTACAGCAA
CAAGCGAGATTGTAGCAGGTGTTTCCGTTCGTGTAGACGAAAGCGCAGTG
ATATATCGAGGCAGAGTAAAGACGGGGTGTTAGTTCACCGTGGCTGAGCG
ATGATGGTGCTGATGATGATGGTGGTGGTGGTAGTGGTGATGATGATGAT
AATGATGTCATGATGATGTGGTATTTGGGGTGACTATATACGCAAGGATA
AGGCTGTTTCCTGGGGAACGGTATCGGCGCGATCGGCTGCGGGGTATTTA
GGCTTGTGCGTCCACTGGTTCATTTGTTCCCTCGCCTGCGGTGTGATTTT
GATGCGATGGTGGGAGTAGATGTCGGGGCTGGGGCTGGGGCTGGCACGGT
CGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1910:106..5810-

>mRNA_H-paniculata_contig1910.4787.1 ID=mRNA_H-paniculata_contig1910.4787.1|Name=mRNA_H-paniculata_contig1910.4787.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at H-paniculata_contig1910:106..5810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGATACCGAGTCTTCTCCGGCGGGCGACGGTGTGGTTTCTAACGC
GGTACTGCTCAGGGTTTCCGCTAAGAGAGAGGCGGTTTTGCGTGACATGC
TGGCGTTTTCTAGCGACGGCGAGGGTATGGACGGTCCACAGATGTCCGAT
ACCGAGTCTTCTCCGGCGGGCGACGGTGTGGTTTCTAACGCGGTACTGCT
CAGGGTTTCCGCTAAGAGAGAGGCGGTTTTGCGTGACATGCTGGCGTTTT
CTAGCGACGGCGAGGGTATGGACGGTCCACAGGTGGACTGGCGGCTAATC
AAGCAGGGGGACGGGGTGAGGCTGTGGAGAGCGCAGGTGCCGGGCACGGT
CTGGTGCATGATCCGTACGCGCACCGCGTTGGTGGCGCCGCCGCAGGTGG
TGCTAGACTACTTGCTCGACGACACGTGCATCCCGACCTACGACGAGCTG
TTCGACAAGATAGAGGTCATCGAGGCCGTCGACAGCACCAGCACTTTCAA
GCGAACGTGGACTGGCGGCTAATCAAGCAGGGGGACGGGGTGAGGCTGTG
GAGAGCGCAGGTGCCGGGCACGGTCTGGTGCATGATCCGTACGCGCACCG
CGTTGGTGGCGCCGCCGCAGGTGGTGCTAGACTACTTGCTCGACGACACG
TGCATCCCGACCTACGACGAGCTGTTCGACAAGATAGAGGTCATCGAGGC
CGTCGACAGCACCAGCACTTTCAAGCGAACGTGCTACAAGCCCATCTGGC
CCACGGCGCCGCGAGACTTCTCTCTGCTGTCCTCGTGGGGTGCACTCGAG
GACGGTACGGCATACCTTCTCAATCGCTCCATCGATCACCCGATGAACCC
TCCAGTAAAGGTGCTACAAGCCCATCTGGCCCACGGCGCCGCGAGACTTC
TCTCTGCTGTCCTCGTGGGGTGCACTCGAGGACGGTACGGCATACCTTCT
CAATCGCTCCATCGATCACCCGATGAACCCTCCAGTAAAGGGCTTCGTCC
GCGGGGTGGTGATGCTGTGCGGGTTCCTCATGGTACCCCGCCCACCCGAA
GGGGGAGGAGGGTGCACCATGACGATGATCGTTCACACGGACCTCGGCGG
CAGCCTGCCGGCCAGCATCCTTAACCACCTCTCCACTAACAGTCCCTGGC
GCCTTGTGCAGCGCTTGCGTACCATCTTCGAGGAAAATGCCCCAACCCCA
GCGGCTGCTCCCGTTGCATCGATGGTGACTGCCCCTGCACCTGTGGGAAG
AGCGGATGAGCAGGGACCCCCTGGGGAAGGGCAATCGGGCAGCAGCCAGG
GCCCGCGACGGGTAGGATATGCTCTATCAGAAGGAGAGGGGAGGACTGCC
GATGGACTGCCGGGGCAGGGACAGGCGCAGGAAGCCGCCGCCGCACTGGT
GGTCAGCGCGCCGGTTGGTGGGGGTGCGGGTGCGAGGGGAGACAGTGGAG
AGGGCGACGGGTTGGTACAGCAACAAGCGAGATTGTAGGGCTTCGTCCGC
GGGGTGGTGATGCTGTGCGGGTTCCTCATGGTACCCCGCCCACCCGAAGG
GGGAGGAGGGTGCACCATGACGATGATCGTTCACACGGACCTCGGCGGCA
GCCTGCCGGCCAGCATCCTTAACCACCTCTCCACTAACAGTCCCTGGCGC
CTTGTGCAGCGCTTGCGTACCATCTTCGAGGAAAATGCCCCAACCCCAGC
GGCTGCTCCCGTTGCATCGATGGTGACTGCCCCTGCACCTGTGGGAAGAG
CGGATGAGCAGGGACCCCCTGGGGAAGGGCAATCGGGCAGCAGCCAGGGC
CCGCGACGGGTAGGATATGCTCTATCAGAAGGAGAGGGGAGGACTGCCGA
TGGACTGCCGGGGCAGGGACAGGCGCAGGAAGCCGCCGCCGCACTGGTGG
TCAGCGCGCCGGTTGGTGGGGGTGCGGGTGCGAGGGGAGACAGTGGAGAG
GGCGACGGGTTGGTACAGCAACAAGCGAGATTGTAG
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