mRNA_H-paniculata_contig1910.4788.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1910.4788.1
Unique NamemRNA_H-paniculata_contig1910.4788.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1910.4788.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 7.120e-31
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:   73 ISEVTFFTHLKFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSSQED-EVLAEAAAKLQVGAMGGGADWGN 297
            +SEVTFFTHL FSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGS QED EVL   A ++  G  GGGADWG+
Sbjct:  741 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHHGAPRMGAGGAGGGADWGH 816
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BLAST of mRNA_H-paniculata_contig1910.4788.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 9.840e-31
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 1 
Query:   70 GISEVTFFTHLKFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSSQED-EVLAEAAAKLQVGAMGGGADWGN 297
            G+SEVTFFTHL FSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGS QED EVL + A ++  G  GG ADWG+
Sbjct: 1070 GVSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHDGAPRMGAGGAGGRADWGH 1146
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BLAST of mRNA_H-paniculata_contig1910.4788.1 vs. uniprot
Match: A0A835YHQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.310e-8
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   76 SEVTFFTHLKFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSSQEDEVLAEAAA 252
            SEV F+THL FS  LP  ++ +A R+ +GPLHILQEL+ VV+RTL     D     AAA
Sbjct:  455 SEVYFYTHLSFSENLPALEDAQASRYLLGPLHILQELRRVVDRTLEYGHSDAARDAAAA 513
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1910.4788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSJ0_ECTSI7.120e-3180.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K079_9PHAE9.840e-3179.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHQ7_9STRA4.310e-852.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1910contigH-paniculata_contig1910:5847..6838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D7FSJ0
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Exons2
Model size358
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929462.0923924-CDS-H-paniculata_contig1910:5847..60241622929462.0923924-CDS-H-paniculata_contig1910:5847..6024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 5848..6024 -
1691480871.8861716-CDS-H-paniculata_contig1910:5847..60241691480871.8861716-CDS-H-paniculata_contig1910:5847..6024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 5848..6024 -
1622929462.1033099-CDS-H-paniculata_contig1910:6658..68381622929462.1033099-CDS-H-paniculata_contig1910:6658..6838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 6659..6838 -
1691480871.8963563-CDS-H-paniculata_contig1910:6658..68381691480871.8963563-CDS-H-paniculata_contig1910:6658..6838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1910 6659..6838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1910.4788.1prot_H-paniculata_contig1910.4788.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1910 5848..6838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1910.4788.1

>prot_H-paniculata_contig1910.4788.1 ID=prot_H-paniculata_contig1910.4788.1|Name=mRNA_H-paniculata_contig1910.4788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
PGRGDWRSVGAGRVSWGAGARGSGISEVTFFTHLKFSAYLPDFQEMEACR
HFVGPLHILQELKWVVERTLGSSQEDEVLAEAAAKLQVGAMGGGADWGNA
PSSSHPRRKSGTDGSRRGS
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mRNA from alignment at H-paniculata_contig1910:5847..6838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1910.4788.1 ID=mRNA_H-paniculata_contig1910.4788.1|Name=mRNA_H-paniculata_contig1910.4788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=992bp|location=Sequence derived from alignment at H-paniculata_contig1910:5847..6838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGGAGAGGTGATTGGAGGAGCGTGGGCGCCGGGCGGGTGAGCTGGGG
CGCGGGAGCGAGAGGCAGCGGGATTAGCGAGGTGACGTTCTTCACGCATC
TCAAGTTCAGCGCGTACTTGCCGGATTTCCAGGAGATGGAGGCATGTCGA
CATTTCGTGGGGCCGCTTCACATTCTTCAGGTTCGGCAGTAGTAGTAGTA
GTAGTAGTATTCGTTTTTTGGTTCTTGATGGGAGGGTGCGACGGGAGGGA
GGGAGGGGGATTCTCACACTAGTCGGGACGAAAACAGTACGTGGGTCATG
ACTGTAACTGCTGAAATTCTCATGGAGTATTAAGCGTATCACTATTTTAG
CGTGTGTACTGCGCGTAGACACGCAAAGTGACGTCTCTCACTCACAGGTC
AACCCGCTTCAAATGGTTGTCCCGTCATACAGTAATTTTGGTAAAACAGT
TTTGCTGGGGTTATGCAGCCCATAATCAGTCATAGCTGGGTATGCTTCAC
GAGAAAATCACAACAGCATCAAACAGTAGTACAGAAAATGCAAGTTAAAA
ATGTAAAGAGAGCTTGATAGGTGGAGCACAGTTTTTTCGAGACTCGTGAT
TGAACAGTGGCCGTTTTTTCCAATGGATCCGAGTGCAAGGATACAATTAA
ACTCACAAGACATGCATGGGCGAGATATTTCGAGAGGGCGAAGCAGAGTC
TTCCTCCTCTCTCTCACACTCTCGCCTTTTTGGCGTGTACCTGAGTGTGC
TTGTTTTCTACACTCCCAAAACATCAATACCATCAATACCATCAATACCA
TCATCAACATGCAGGAACTCAAGTGGGTGGTGGAGCGCACGCTGGGATCC
TCCCAGGAAGACGAGGTCCTAGCCGAGGCGGCAGCGAAGCTACAGGTTGG
AGCCATGGGCGGTGGCGCCGACTGGGGCAACGCGCCCTCCTCCTCTCACC
CTCGGAGAAAGTCGGGGACTGATGGAAGCCGCCGAGGCAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1910:5847..6838-

>mRNA_H-paniculata_contig1910.4788.1 ID=mRNA_H-paniculata_contig1910.4788.1|Name=mRNA_H-paniculata_contig1910.4788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig1910:5847..6838- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGGAGAGGTGATTGGAGGAGCGTGGGCGCCGGGCGGGTGAGCTGGGG
CGCGGGAGCGAGAGGCAGCGGGATTAGCGAGGTGACGTTCTTCACGCATC
TCAAGTTCAGCGCGTACTTGCCGGATTTCCAGGAGATGGAGGCATGTCGA
CATTTCGTGGGGCCGCTTCACATTCTTCAGCCGGGGAGAGGTGATTGGAG
GAGCGTGGGCGCCGGGCGGGTGAGCTGGGGCGCGGGAGCGAGAGGCAGCG
GGATTAGCGAGGTGACGTTCTTCACGCATCTCAAGTTCAGCGCGTACTTG
CCGGATTTCCAGGAGATGGAGGCATGTCGACATTTCGTGGGGCCGCTTCA
CATTCTTCAGGAACTCAAGTGGGTGGTGGAGCGCACGCTGGGATCCTCCC
AGGAAGACGAGGTCCTAGCCGAGGCGGCAGCGAAGCTACAGGTTGGAGCC
ATGGGCGGTGGCGCCGACTGGGGCAACGCGCCCTCCTCCTCTCACCCTCG
GAGAAAGTCGGGGACTGATGGAAGCCGCCGAGGCAGCGAACTCAAGTGGG
TGGTGGAGCGCACGCTGGGATCCTCCCAGGAAGACGAGGTCCTAGCCGAG
GCGGCAGCGAAGCTACAGGTTGGAGCCATGGGCGGTGGCGCCGACTGGGG
CAACGCGCCCTCCTCCTCTCACCCTCGGAGAAAGTCGGGGACTGATGGAA
GCCGCCGAGGCAGC
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