prot_H-paniculata_contig191.4785.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig191.4785.1
Unique Nameprot_H-paniculata_contig191.4785.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length107
Homology
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.960e-59
Identity = 89/106 (83.96%), Postives = 97/106 (91.51%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAVKEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTGRPALALLKEGLRDLRDLCDLLEDRVDEEIPGV 106
            MAVNE RPTVAD+ F VKEG++ SSATFIFG+EDHTLGNALRHVLMQN EVDFCGYSVPHPSEPKMNLRLQTTGRPAL LLKEGLRDLRDLC++LE+RV+ EIP  
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIPDA 106          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.510e-42
Identity = 69/101 (68.32%), Postives = 84/101 (83.17%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAVKEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTT-GRPALALLKEGLRDLRDLCDLLEDRVD 100
            M+VNE RP  AD+ F + EGAT +SATF+FG+EDHTLGNALRHVLMQ  E DFCGYSVPHPSEPKMNLRLQT  G PA+ +LK GL+DL  +CD+L++++D
Sbjct:    1 MSVNEHRPKPADLKFEILEGATTTSATFVFGDEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLD 101          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK)

HSP 1 Score: 138 bits (348), Expect = 3.710e-40
Identity = 67/95 (70.53%), Postives = 75/95 (78.95%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAVKEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTGRPALALLKEGLRDLRDLCDLL 95
            MAVNE R   A+  FAV EG+T  SATF+FGNEDHTLGNALRHVLMQ  E DFCGYSVPHP+EPKMN+RLQT G  AL +L+ GL DL  +CDLL
Sbjct:   28 MAVNEHRTMPAEERFAVLEGSTSHSATFVFGNEDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.620e-35
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAVKEGATPSSA---TFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTGR--PALALLKEGLRDLRDLCDLLED 97
            MAVNE R   ADV F V E A  +     TF+FG+E HTLGNALRHVLM+  E  FCGYS+PHPSEPKMN+RLQTT +  PA+ LLK GL+DL D+CD++++
Sbjct:    1 MAVNEQRLATADVAFEVLEAADETDVGNRTFVFGDEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDE 102          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.970e-34
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAV---KEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTGRP--ALALLKEGLRDLRDLCDLLEDRVDEEI 103
            M+VNE R    +V F +    +   P + TFIFGNEDHTLGNALRHVLMQ  E  FCGYS+PHPSEPKMNLRLQT  +   A+ LLK GL+DL ++CD++++  D+ +
Sbjct:    1 MSVNEHRTPQEEVDFQILNSPDDKDPGNRTFIFGNEDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDETFDDAL 108          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.100e-33
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAVKEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTG-RPALALLKEGLRDLRDLCDLLEDRVDEEI 103
            M+VNE RP  A+  F   E     S TF+FG+EDHTLGN+LRHVLM   E  FCGYSVPHPSEPKMN+RLQT+  +PAL +LK+GL ++ ++CDL +  +D  I
Sbjct:    1 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAI 104          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: W7TJI2_9STRA (Dna-directed rna polymerases i and iii subunit rpac2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.010e-33
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAVKEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTG-RPALALLKEGLRDLRDLCDLLEDRVDEEI 103
            M+VNE RP  A+  F   E     S TF+FG+EDHTLGN+LRHVLM   E  FCGYSVPHPSEPKMN+RLQT+  +PAL +LK+GL ++ ++CDL +  +D  I
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAI 140          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: A0A7S2UY40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY40_9STRA)

HSP 1 Score: 119 bits (298), Expect = 9.000e-33
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    1 MAVNETRPTVADVVFAVKEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTT-GRPALALLKEGLRDLRDLCDLLEDRVDEEI 103
            MAVNE +   AD+ F   +G+T  S TF FG+EDHTLGNALRHVLMQ ++ + CGYSVPHP+EP M++RLQT  G  A  +LK+GL DL  +CD L D+ D+ +
Sbjct:    1 MAVNEHKTLPADIRFQKLQGSTIDSCTFSFGDEDHTLGNALRHVLMQQAKTELCGYSVPHPTEPYMHVRLQTIQGSDATEVLKDGLNDLAKICDTLTDKFDKAL 104          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: A0A094C6G5_9PEZI (RNA_pol_L_2 domain-containing protein n=2 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A094C6G5_9PEZI)

HSP 1 Score: 111 bits (278), Expect = 2.160e-29
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 0
Query:   17 VKEGATPSSATFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTGRPALALLKEGLRDLRDLCDLLEDRVDEE 102
            V  G++ ++A+F F NEDHTLGNALR+++M+N  V+FCGYS+PHPSEPKMN+R+QT    A   L++GL DL DLCD++E++  EE
Sbjct:   46 VLPGSSDTAASFEFTNEDHTLGNALRYIIMKNPNVEFCGYSIPHPSEPKMNIRIQTYEGTAFEALEKGLDDLMDLCDVVEEKFVEE 131          
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Match: F0YN30_AURAN (RNA_pol_L_2 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN30_AURAN)

HSP 1 Score: 109 bits (272), Expect = 2.800e-29
Identity = 48/74 (64.86%), Postives = 60/74 (81.08%), Query Frame = 0
Query:   27 TFIFGNEDHTLGNALRHVLMQNSEVDFCGYSVPHPSEPKMNLRLQTTGRPALALLKEGLRDLRDLCDLLEDRVD 100
            TF+F +EDHTLGNALRHVLM+  + DF GYSVPHPSEP MN+RLQTTGRPALA++ +GL  L  +CD L  +++
Sbjct:    1 TFVFRDEDHTLGNALRHVLMRQRDTDFAGYSVPHPSEPLMNVRLQTTGRPALAVMDDGLAQLSSICDSLTGQLE 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig191.4785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ6_ECTSI3.960e-5983.96RNA_pol_L_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YNA2_9STRA1.510e-4268.32RNA polymerase Rpb3/Rpb11 dimerization domain-cont... [more]
A0A7S4DHT9_HETAK3.710e-4070.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U1D2_9STRA3.620e-3560.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1TTH9_9STRA5.970e-3455.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D350_9STRA2.100e-3356.73RNA_pol_L_2 domain-containing protein n=1 Tax=Nann... [more]
W7TJI2_9STRA6.010e-3356.73Dna-directed rna polymerases i and iii subunit rpa... [more]
A0A7S2UY40_9STRA9.000e-3355.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A094C6G5_9PEZI2.160e-2956.98RNA_pol_L_2 domain-containing protein n=2 Tax=uncl... [more]
F0YN30_AURAN2.800e-2964.86RNA_pol_L_2 domain-containing protein (Fragment) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 17..102
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 17..102
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 11..105
e-value: 2.0E-33
score: 115.9
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 20..103
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 26..97
e-value: 1.6E-30
score: 104.7
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 30..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig191contigH-paniculata_contig191:8083..11482 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig191.4785.1mRNA_H-paniculata_contig191.4785.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig191 1864..12306 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig191.4785.1 ID=prot_H-paniculata_contig191.4785.1|Name=mRNA_H-paniculata_contig191.4785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MAVNETRPTVADVVFAVKEGATPSSATFIFGNEDHTLGNALRHVLMQNSE
VDFCGYSVPHPSEPKMNLRLQTTGRPALALLKEGLRDLRDLCDLLEDRVD
EEIPGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036603RBP11-like
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS