mRNA_H-paniculata_contig19093.4784.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19093.4784.1
Unique NamemRNA_H-paniculata_contig19093.4784.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: A0A177U0C1_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0C1_9BASI)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-19
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W+ AM+E+ +A  +  TW   DL  L   RKA+ ++W++K KL EDG  AR +ARLVAQGFSQVEG DF ET APVAR  TLRA+
Sbjct:  727 WKQAMDEQLQALQDMHTW---DLMELPPNRKAVGSRWVYKLKLDEDGKAARRKARLVAQGFSQVEGIDFTETFAPVARLDTLRAL 808          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: UPI0007729B35 (uncharacterized protein LOC107261307 n=1 Tax=Ricinus communis TaxID=3988 RepID=UPI0007729B35)

HSP 1 Score: 89.0 bits (219), Expect = 8.770e-19
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLR 249
            WR AME E +A  +NGTW   DL  L   +KAI  KW+FK KLK DG+V R++ARLVA+GF Q+EG D+FE+ +PVA+  T+R
Sbjct:  497 WRLAMENELQALEKNGTW---DLVELPTDKKAIGCKWVFKLKLKPDGTVDRHKARLVAKGFHQLEGIDYFESFSPVAKIVTVR 576          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: A0A151SEK1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SEK1_CAJCA)

HSP 1 Score: 84.3 bits (207), Expect = 9.650e-19
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W+ AM++E+ A ++N TW   DL  L  GR AI  KWIFK K K+DGS+ R++ARLVA+GFSQ +G D+ +T +PV +  ++R V
Sbjct:   33 WKQAMQDEYNALLKNHTW---DLVSLPPGRTAITCKWIFKNKYKQDGSILRHKARLVARGFSQQQGLDYTDTFSPVVKPVSIRIV 114          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 84.0 bits (206), Expect = 1.050e-18
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W+ AMEEE E    N TW   D+     GRK ++ KW+FKRKL +DG V R +ARLVA+G++QVEG D+ ET +PV +T ++R +
Sbjct:   46 WKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTL 127          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 88.6 bits (218), Expect = 1.130e-18
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W+AAM++E  +  ENGTW+  DL     GRKA+  KWIFKRKL EDG+V R +ARLVAQGF+Q  G D+ E  APV R  T R +
Sbjct:    9 WKAAMDDEMTSLRENGTWQLTDL---PPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVL 90          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: A0A151QQX0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QQX0_CAJCA)

HSP 1 Score: 86.7 bits (213), Expect = 1.600e-18
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W+ AM++E+ A ++N TW   DL  L  GRKAI  KWIFK K K+DGS+ R++ARLVA+GF+Q +G D+ +T +PV R  ++R V
Sbjct:   33 WKQAMQDEYNALMKNYTW---DLVSLPPGRKAITCKWIFKNKYKQDGSILRHKARLVARGFNQQQGIDYTDTFSPVVRPVSIRVV 114          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: A0A177U0N4_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0N4_9BASI)

HSP 1 Score: 88.2 bits (217), Expect = 1.680e-18
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W  AM+E+  A V   TW   DL  L AGRKAI ++W++K KL EDG   R +ARLVAQGF+QV G D+FET APVAR  +LR +
Sbjct:  649 WSTAMDEQMNALVGMHTW---DLVELPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVI 730          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: UPI001AA0F8A7 (hypothetical protein n=1 Tax=Bacteroides uniformis TaxID=820 RepID=UPI001AA0F8A7)

HSP 1 Score: 82.0 bits (201), Expect = 1.780e-18
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 1
Query:   13 MEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            M EE+ + +EN TW   DL  L  GRK +R +W++K K   DG V +N+ARL+A+GFSQVEG D+ ET +PVA+ +++R V
Sbjct:    4 MNEEYRSLLENNTW---DLVPLPKGRKFVRCRWVYKTKFGPDGKVDKNKARLIAKGFSQVEGIDYIETFSPVAKMNSIRLV 81          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: A0A177TL22_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TL22_9BASI)

HSP 1 Score: 87.8 bits (216), Expect = 2.300e-18
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W  AM+E+  A V   TW   DL  L AGRKAI ++W++K KL EDG   R +ARLVAQGF+QV G D+FET APVAR  +LR +
Sbjct:  648 WSKAMDEQMNALVGMHTW---DLVELPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVI 729          
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Match: A0A4Y1R7U6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R7U6_PRUDU)

HSP 1 Score: 84.7 bits (208), Expect = 2.460e-18
Identity = 39/85 (45.88%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 WRAAMEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRARLVAQGFSQVEGEDFFETSAPVARTSTLRAV 255
            W+ A+ +E+++ ++N TW    L  L AG KAI  KW+F++KLK DGS+ + +ARLVA+GF+Q +G D+F+T +PV+R +T+R +
Sbjct:    8 WKEAINDEFQSIIQNNTWM---LTNLPAGNKAIGCKWVFRKKLKPDGSIDKYKARLVAKGFTQKKGIDYFDTYSPVSRITTIRTL 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19093.4784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177U0C1_9BASI1.400e-1956.47Integrase catalytic domain-containing protein n=2 ... [more]
UPI0007729B358.770e-1955.42uncharacterized protein LOC107261307 n=1 Tax=Ricin... [more]
A0A151SEK1_CAJCA9.650e-1949.41Retrovirus-related Pol polyprotein from transposon... [more]
UPI0015A81C6A1.050e-1849.41uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A182GIT5_AEDAL1.130e-1855.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151QQX0_CAJCA1.600e-1850.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A177U0N4_9BASI1.680e-1855.29Integrase catalytic domain-containing protein n=2 ... [more]
UPI001AA0F8A71.780e-1849.38hypothetical protein n=1 Tax=Bacteroides uniformis... [more]
A0A177TL22_9BASI2.300e-1855.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1R7U6_PRUDU2.460e-1845.88Transposable element protein n=1 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19093contigH-paniculata_contig19093:632..886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue6.8e-13
Seed eggNOG ortholog15368.BRADI3G37625.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929461.7506924-CDS-H-paniculata_contig19093:631..8741622929461.7506924-CDS-H-paniculata_contig19093:631..874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19093 632..874 -
1691480871.6904986-CDS-H-paniculata_contig19093:631..8741691480871.6904986-CDS-H-paniculata_contig19093:631..874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19093 632..874 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929461.7625287-UTR-H-paniculata_contig19093:874..8861622929461.7625287-UTR-H-paniculata_contig19093:874..886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19093 875..886 -
1691480871.7027946-UTR-H-paniculata_contig19093:874..8861691480871.7027946-UTR-H-paniculata_contig19093:874..886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19093 875..886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19093.4784.1prot_H-paniculata_contig19093.4784.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19093 632..874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19093.4784.1

>prot_H-paniculata_contig19093.4784.1 ID=prot_H-paniculata_contig19093.4784.1|Name=mRNA_H-paniculata_contig19093.4784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MEEEWEASVENGTWESEDLGRLAAGRKAIRTKWIFKRKLKEDGSVARNRA
RLVAQGFSQVEGEDFFETSAPVARTSTLRAV
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mRNA from alignment at H-paniculata_contig19093:632..886-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19093.4784.1 ID=mRNA_H-paniculata_contig19093.4784.1|Name=mRNA_H-paniculata_contig19093.4784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig19093:632..886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCGCGCGGCAATGGAGGAAGAATGGGAGGCGTCGGTGGAAAATGGAAC ATGGGAAAGCGAAGACCTGGGGAGATTAGCGGCAGGGCGGAAGGCGATTC GTACGAAATGGATTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCA CGCAACAGAGCGCGACTGGTGGCTCAAGGCTTTTCACAGGTGGAGGGTGA AGATTTCTTTGAAACCAGTGCCCCCGTAGCTCGCACGTCGACGTTACGTG CTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig19093:632..886-

>mRNA_H-paniculata_contig19093.4784.1 ID=mRNA_H-paniculata_contig19093.4784.1|Name=mRNA_H-paniculata_contig19093.4784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig19093:632..886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGAGGCGTCGGTGGAAAATGGAACATGGGAAAGCGA
AGACCTGGGGAGATTAGCGGCAGGGCGGAAGGCGATTCGTACGAAATGGA
TTTTCAAGCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCAACAGAGCG
CGACTGGTGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAGATTTCTTTGA
AACCAGTGCCCCCGTAGCTCGCACGTCGACGTTACGTGCTGTTATGGAGG
AAGAATGGGAGGCGTCGGTGGAAAATGGAACATGGGAAAGCGAAGACCTG
GGGAGATTAGCGGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAA
GCGGAAACTGAAGGAGGACGGCAGCGTGGCACGCAACAGAGCGCGACTGG
TGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAGATTTCTTTGAAACCAGT
GCCCCCGTAGCTCGCACGTCGACGTTACGTGCTGTT
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