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Homology
BLAST of mRNA_H-paniculata_contig19080.4782.1 vs. uniprot
Match: A0A6H5JRQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ9_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 3.810e-11 Identity = 91/242 (37.60%), Postives = 108/242 (44.63%), Query Frame = 1
Query: 1 EERLAAEAACLQRREEQHNIEKEAFRAKMRSVEGELRSRAEEELAXXXXXXXXXXXXXXXXXXXLLQRLARAEAVT----------RXXXXXXXXXXXXXXXXXXXXNAERSALDTRATLLAPQFRALEEGKSLLEDARREGCKLYWGRSAGSRRARSLAREESRRIADEARRVRETEAKSIEREAKAEAKWDETAVARRATKQMGRHLSQEVEALSEQRRAVELARVRLHEQQMEVTLQAS 696
EERLAAEAA LQRREE H I+ EA RA++R +E E R+R EE+ + LL+R+A AE+ R XXXXXXXXXX D RA P+ RA DARR +RR R E KW E ARRA KQM R + E E L+EQR+A+ LARVRLHE QME+ LQ S
Sbjct: 419 EERLAAEAASLQRREEAHKIDMEACRAQIRRMEAETRARVEEDASRERSTLTNAKSAFERERGELLRRVAAAESAGQAAIAEGFEFRRGVADGRGERXXXXXXXXXXXXXXXXXDARAAACCPRRRA--------SDARR----------VSTRRPRXXXXXXXXXXXX----XXXXXXXXXXXXXXXEVKWKEITTARRAIKQMERGVVNEAEGLAEQRKALALARVRLHEHQMEMVLQMS 638
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 696 |
| Cds size | 696 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig19080.4782.1 >prot_H-paniculata_contig19080.4782.1 ID=prot_H-paniculata_contig19080.4782.1|Name=mRNA_H-paniculata_contig19080.4782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
EERLAAEAACLQRREEQHNIEKEAFRAKMRSVEGELRSRAEEELARVKTE
LSLAQSVLEQERTELLQRLARAEAVTRAREAEAESARSEIAASRNRVNAE
RSALDTRATLLAPQFRALEEGKSLLEDARREGCKLYWGRSAGSRRARSLA
REESRRIADEARRVRETEAKSIEREAKAEAKWDETAVARRATKQMGRHLS
QEVEALSEQRRAVELARVRLHEQQMEVTLQAS back to topmRNA from alignment at H-paniculata_contig19080:1..4555+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig19080.4782.1 ID=mRNA_H-paniculata_contig19080.4782.1|Name=mRNA_H-paniculata_contig19080.4782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4555bp|location=Sequence derived from alignment at H-paniculata_contig19080:1..4555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGCGCTTGGCGGCGGAAGCTGCCTGTCTTCAACGAAGGGAAGAACA
GCACAATGTAATACAACGGTATCTGCGGGGGTCGCACAAACAGCCATAGC
ACAGTAGCGATAGGATTGAATCGCGTCCCTCTGCAAGCTCCCTGGCCCTC
CAGTAAGGCGGGCCAACGGCGTACTGTAGTATTCAGCGACTCTTAGCGGA
TCGGGAGGTAGGGAGATAGCACAAATAGACTTTTCATAGGTTCCGGCTGT
ACCCTCGAGGGCGGATGCCTACCAGCACGAAAGTGTTGAAAGCATTCGAG
GATAACTCGTCCTCGTCACTGTTGGGAAGAGTGGTTACCTTTGATTGGCC
AATCAATTCTCCAGCAAAGGAGACACCGAGCCCCTGCTTCCCCTCCCCCC
AAGGCACGCGCAAACCTTTGTAACTTGTACTGATCTATAGGTGGGTACAC
CCGTTGTCGTGCGAAAGGGCTGTCTTTTTCTGGTTGCGACTTGGTTGGAA
ATCGCTTGTATTATCGTCACATTGGAGGTGTTCTTACTGTGGAAGGTTTT
GTTTGTGTAATACTTTGTGAAGCAAGTGTGAGCGCCCTACACCGACATGA
AACGTCTTCCAAGCTGTGCTCCGTGGGTGTAGGTGCTGCCCTGCTCGGTA
GGTTCATCTGGACCTTCTGGGTTTGATAGACCCATCTCAAGTTTCCGCCT
CAAAGTTAAGCGTCGCGCTTACATTACTCAAGTACCAAAGAGTAAGTGGC
AACCGTCCATGCTCCTCCGCTCTGCCGACTTTTCGCCCCGTCTGCTAGAG
GACGCGTAATAAATGGTCCAACAGCGGACGTCTCCGTCCCCACTGCCTCC
CGCCAGATCGAAAAGGAGGCATTTCGAGCGAAGATGAGAAGTGTAGAAGG
TGAATTGCGCTCCAGAGCCGAGGAAGAGCTAGCGAGAGTGAAGACAGAGC
TAAGTTTGGCTCAGTCGGTGCTGGAACAAGAGAGGACTGAGCTTCTGCAG
CGCTTGGCAAGAGCGGAAGCTGTTACGCGGGCCAGGGAAGCGGAGGTATG
CTGGATGATTACAGGTGCAACGGATAATATTACATACAGGAAGTCAACAA
ACGCACGGCCACAACGCCCGAAGTGCGTGATCTATCTTTGACGTTTTGTG
TACAAGCTCGGCATGGCACATGAGTTCTATGGTCAGTTTGGCTTCGCTTG
CACAACGTTATCCACTCTACGCAAAATAGCTCTGGGACTTCAGAGCAAAG
AAAGTTGATTTGGATACACGAGATTTTAGGCAAATAATACATTAAACAAG
CTTTCTATATTTGTATATACCATTGGATAACATGTGCGTGCGTGTTGTCG
TTCTACCCTCGTATCGTAGCATGGTGTCTTAACAAGCACAGCTCGGAACA
ATGCATGCCCTCGGGGCCCAAACCTACTCACAAGAACCGAACGGTTTGTA
TTTCAACATCCCTCTCGTGCTCTGTAGCGCCCGATCCTACGATACTGTAT
GCATATGTAGCACAAGAAGGACAAACGTCTAACTCGTGCAGAATCGGAAG
CCAATTTATGACATTGTATTGGGTCGACCCTTCAAGAATTTAAACATGGC
GTTTTGCTTGCTACCCATCTTCTGTCGTCACCTGCAATCGCGCACCTTGT
TGAGGTATTTGTCGTGGTGCACTTGGTACAAAGTTTTACTCAGCGAATAC
AGTCTCACTCTCTCTCTCTCTCTCTTTCTATATATATATATATATATATA
ATGTAATTGGGAGATGTCTCCGGGCTGAATAGTGACCTCAAAAATACAGT
ACAATATTGAAGAAATTATGTGTTCCATAAGTTGGATCCACAGAGGTGCT
TGGGGACAGAGGAGGTATTCATATGCTTTGCACAATTGCAGAGAACTCGG
GGCAGATTGAACGGAGCGGACGCATGAAAAGCGTAGTCTCATAATTTTGT
GAACCTGGGGCATCTGTATTTCTTGTGCAATTTCGGAGTATCTTGGAACA
AACCGAGCGCTGTTTGGTCAACCCTGTCTTCGAATTTAATTCTAGCACGG
AGTCGAGTATAAAGCAGACAATGCCTGCCGAAGGATGGCGAGGGGGCGTA
CTCCTGTTTTGGATACCGTAGTTGTTAGACGGTTGACCACTCGTCCTCCA
GAGGACGGAGCTTTTTTCCTATCAGAGCAATTTCCGATGGCCAGTGGCCC
GTTTCTACGTTGCCAAATGTGGCTCAAACATCTTTTACCTACCCTATCTA
CCTCAATCCTCGCCTTTTCAGGCCAAGGAGGGGGGGAGGTAGATCTAATG
ACGGAATCAGGGGGCGGATGCGTCGAAAAGAGCCTCCGCCACACCCGTCT
CCGGAAGTGAGACTTGCCTCGAACTCAGTATGTACGCATAGCCGGTTGCC
TCGCAGCGTGGGGATTTGCCAACGGTCCTTCATTACCCGAGCACTGCGCC
AGAGCTTCTGCTTTCTGTGTCCTTCTCTTCGTGACTGCGATCCGACGTGT
ATATTGGTTTGAGATGGTGAGTATCTCGGCTTGTGTATGCTAATGATACT
AACGAAAAATTCTTTTTTTTTCTGTCTGAACTGTACCGCTGAACACCGTT
ACCTCTGTTTTGATCACCAGTCCCAGGCCCCTGTCTCGATGAGCCTATGT
ACAGACCTAGCGGAGAATAGCACACCGCTCAGTTTCATGACATATATGTA
TGTTCCCCCCTTGATCAGGCAGAGTCTGCAAGGAGTGAAATCGCGGCGTC
CAGGAATAGAGTAAACGCGGAAAGGTCCGCTTTGGATACGAGAGCTACCT
TGCTGGCGCCTCAGTTCAGGGCACTCGAGGAGGGGAAGTCATTGCTAGAA
GACGCACGACGCGAAGGTTGCAAACTTTACTGTTTATTCTGGAGGAAATG
GGCATCTACGTATGTACCAAAAGAAGCATTGGCGGTCATGTACTGGCTGC
AGGTGATACAAAATGAGCACAAGCAAACTCTTTACACCTCGGTAGGCCAA
CATCGAGATGTACAACTGCTTTTTCGTAAGCGATCTGCAGCCTACATGTA
CAACTCAAACAGATCAAATATGATAACATATATAGTTAACGGGGTATTCC
AACTAACAGCTTGCGTGCCCTAGCCAATAGACGATAGACCATGGGCCACA
TGTTCTGGAGGGGATGGAGCATTGAGGGGCGATGGTGCGATTAGCGTTAG
GGGGAAGAAGCGCCGGCAGCAGACGGGGTCAATTTATTAGAACTTTTTAC
TCAGCTAATCCATAGGCGTACGCTAACCGACGAAAAAGACGAAATACATA
TATCTGAATCAGGAATTGTTGCGATTCACGAACCTACAGCAAAGCTCACT
TTCAAATTGGGACCGTGCATGCTGGCTAGATTCTCTTCCAATCTGTTCCC
TGGAGAAGATGCCTCATTCCAGCGGTTATGGTTGTATCGTAAGAACTTCC
TTTGAAAGTGGGGCTTCTTGCCCTACGTAGCGTTGCGGGTGTCCATTCGA
ACACATAATTCGATACCCCCCCGTCCCCCTTCTTGCCCCCCTCCGTCTCG
TTAACCTCCTGTAACCGTTGTGGTAACGTGAATCGGATTTATCGAATAGC
TCGCTCCTTAGCTCGGGAAGAAAGCCGGCGTATAGCAGACGAGGCGCGGC
GTGTGCGAGAGACGGAGGCAAAATCTATAGAGAGGGAAGCTAAAGCAGAG
GCGAAATGGGATGAGACGGCCGTGGCACGCCGCGCAACGAAGCAGGTGTG
ACTTGTGCCTTAGAGCACGACCCAATGCAGCCCAGAGTCGTACGAGCAAA
GCACAGCCCATCACATGACTTGTTTGTATTGAAACACCACCAGAGGTATA
CGTTGAATATATTTGAGCTCCTTTCTAACATCGCGCACTGTAGTACCGAA
TGTAGATGCACGTCTACGTGGTATTCCCCTTCTGCACGAGATGCTCGCAG
GGTGGCGGGGAGTAGAGAAAATAGGTGCTCCAGGCAGAAGCTACCTTTTA
TGTACTCCGTATGTAGGGGGGTCTAAGCCTTCGCAGTTATGTGATCTTTA
TTATTGAAATGATCCTGTGTAGAAGTATACAACTATTAGATAGGTGCGAC
CGGAATACTAAATGGTATATTTTCCCAGTGTACATTAATTGATGATGGTG
AAGTCCCTTACTCTGTTCCGATCCAAACGGGTTGTTCAGCTCAGATACTG
TCGAGCTCAATTTTATGTTTGAAGGATGTCGAAAAATCATTACGCACGAT
TACAGTTGTTATTGTTTCTCACAGATTAGTTGTTCTCTAGCGGAATGTTT
TTGAACCTCTGTACTTGGTATGCCGTTTTTCTTCGGTCGGTCGATCTCCC
CGCCTTTGCCTCTGTGCTGAAACCGCGCATCAATATCAATGTATGTATAT
ATATATATATTATATGGGTCATTCGTCATGACTCACTGCAGATGGGGCGC
CACTTATCTCAAGAAGTGGAAGCTTTGTCGGAGCAGCGCAGAGCGGTGGA
GTTGGCCAGAGTTCGCCTGCACGAGCAGCAGATGGAAGTGACACTACAGG
CAAGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig19080:1..4555+ >mRNA_H-paniculata_contig19080.4782.1 ID=mRNA_H-paniculata_contig19080.4782.1|Name=mRNA_H-paniculata_contig19080.4782.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig19080:1..4555+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGCGCTTGGCGGCGGAAGCTGCCTGTCTTCAACGAAGGGAAGAACA
GCACAATGAAGAGCGCTTGGCGGCGGAAGCTGCCTGTCTTCAACGAAGGG
AAGAACAGCACAATATCGAAAAGGAGGCATTTCGAGCGAAGATGAGAAGT
GTAGAAGGTGAATTGCGCTCCAGAGCCGAGGAAGAGCTAGCGAGAGTGAA
GACAGAGCTAAGTTTGGCTCAGTCGGTGCTGGAACAAGAGAGGACTGAGC
TTCTGCAGCGCTTGGCAAGAGCGGAAGCTGTTACGCGGGCCAGGGAAGCG
GAGATCGAAAAGGAGGCATTTCGAGCGAAGATGAGAAGTGTAGAAGGTGA
ATTGCGCTCCAGAGCCGAGGAAGAGCTAGCGAGAGTGAAGACAGAGCTAA
GTTTGGCTCAGTCGGTGCTGGAACAAGAGAGGACTGAGCTTCTGCAGCGC
TTGGCAAGAGCGGAAGCTGTTACGCGGGCCAGGGAAGCGGAGGCAGAGTC
TGCAAGGAGTGAAATCGCGGCGTCCAGGAATAGAGTAAACGCGGAAAGGT
CCGCTTTGGATACGAGAGCTACCTTGCTGGCGCCTCAGTTCAGGGCACTC
GAGGAGGGGAAGTCATTGCTAGAAGACGCACGACGCGAAGGTTGCAAACT
TTACTGCAGAGTCTGCAAGGAGTGAAATCGCGGCGTCCAGGAATAGAGTA
AACGCGGAAAGGTCCGCTTTGGATACGAGAGCTACCTTGCTGGCGCCTCA
GTTCAGGGCACTCGAGGAGGGGAAGTCATTGCTAGAAGACGCACGACGCG
AAGGTTGCAAACTTTACTGGGGAAGAAGCGCCGGCAGCAGACGGGGGGGA
AGAAGCGCCGGCAGCAGACGGGCTCGCTCCTTAGCTCGGGAAGAAAGCCG
GCGTATAGCAGACGAGGCGCGGCGTGTGCGAGAGACGGAGGCAAAATCTA
TAGAGAGGGAAGCTAAAGCAGAGGCGAAATGGGATGAGACGGCCGTGGCA
CGCCGCGCAACGAAGCAGCTCGCTCCTTAGCTCGGGAAGAAAGCCGGCGT
ATAGCAGACGAGGCGCGGCGTGTGCGAGAGACGGAGGCAAAATCTATAGA
GAGGGAAGCTAAAGCAGAGGCGAAATGGGATGAGACGGCCGTGGCACGCC
GCGCAACGAAGCAGATGGGGCGCCACTTATCTCAAGAAGTGGAAGCTTTG
TCGGAGCAGCGCAGAGCGGTGGAGTTGGCCAGAGTTCGCCTGCACGAGCA
GCAGATGGAAGTGACACTACAGGCAAGCATGGGGCGCCACTTATCTCAAG
AAGTGGAAGCTTTGTCGGAGCAGCGCAGAGCGGTGGAGTTGGCCAGAGTT
CGCCTGCACGAGCAGCAGATGGAAGTGACACTACAGGCAAGC back to top
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