mRNA_H-paniculata_contig19066.4780.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19066.4780.1
Unique NamemRNA_H-paniculata_contig19066.4780.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19066.4780.1 vs. uniprot
Match: A0A6H5LB52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB52_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.430e-39
Identity = 88/155 (56.77%), Postives = 108/155 (69.68%), Query Frame = 3 
Query:    3 TGGFEGMIFLWGTDNGKVKFSMRPSDHDISQDVDEVSSIGGLTSVATLMERQRRKGLVTEDGDSVHSGGYLDRMEDLLADDQSATSPRWDGREFFAEERMGGVEDGSGTAVAADIPIVGNGEDAADASVKEDDDASEVATAAPSANLPEITATAE 467
            T GF+G IF+WGT++GK KFSM+PSDH++SQ +DEVSSIGGLTSVA  M RQR+K     D DSV SGGYLDRM DLLA+D S     WDGRE+FAEERMGG +DGSGTA AA+  I  + E  + AS   D++A    TA       E++  +E
Sbjct:  355 TAGFDGRIFIWGTESGKPKFSMKPSDHNVSQ-LDEVSSIGGLTSVARWMARQRKKDGKALDSDSVDSGGYLDRMRDLLAEDVSMCHVSWDGREYFAEERMGGSDDGSGTAQAANHTIDPDPEGGSAASADVDENAD---TAVAETTAQEVSVVSE 505
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BLAST of mRNA_H-paniculata_contig19066.4780.1 vs. uniprot
Match: D7FNP1_ECTSI (Similar to WD repeat domain 49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.580e-38
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 3 
Query:    3 TGGFEGMIFLWGTDNGKVKFSMRPSDHDISQDVDEVSSIGGLTSVATLMERQRRKGLVTEDGDSVHSGGYLDRMEDLLADDQSATSPRWDGREFFAEERMGGVEDGSGTAVAA 341
            T GF+G IF+WGTD+GK KFSM+PSDHD+SQ +DEVSSIGGLTSVA  M RQR+K     D DSV+SGGYLDRM  LLA+D S     WDGR++FAEERMGG +DGSGTA AA
Sbjct:  426 TAGFDGRIFIWGTDSGKPKFSMKPSDHDVSQ-LDEVSSIGGLTSVAWWMARQRKKDGKVLDSDSVNSGGYLDRMGGLLAEDASMCHVSWDGRQYFAEERMGGSDDGSGTAQAA 537
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19066.4780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB52_9PHAE5.430e-3956.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNP1_ECTSI2.580e-3869.03Similar to WD repeat domain 49 n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19066contigH-paniculata_contig19066:2025..3705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue9.1e-32
Seed eggNOG ortholog2880.D7FNP1
Preferred nameWDR64
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-01_004800.3
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size770
Cds size750
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19066.4780.1prot_H-paniculata_contig19066.4780.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19066 2045..3705 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929460.4923644-UTR-H-paniculata_contig19066:2024..20441622929460.4923644-UTR-H-paniculata_contig19066:2024..2044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19066 2025..2044 +
1691480871.2432036-UTR-H-paniculata_contig19066:2024..20441691480871.2432036-UTR-H-paniculata_contig19066:2024..2044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19066 2025..2044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929460.5087545-CDS-H-paniculata_contig19066:2044..21191622929460.5087545-CDS-H-paniculata_contig19066:2044..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 2045..2119 +
1691480871.2526321-CDS-H-paniculata_contig19066:2044..21191691480871.2526321-CDS-H-paniculata_contig19066:2044..2119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 2045..2119 +
1622929460.5238788-CDS-H-paniculata_contig19066:2455..25681622929460.5238788-CDS-H-paniculata_contig19066:2455..2568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 2456..2568 +
1691480871.2657022-CDS-H-paniculata_contig19066:2455..25681691480871.2657022-CDS-H-paniculata_contig19066:2455..2568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 2456..2568 +
1622929460.539407-CDS-H-paniculata_contig19066:2734..28191622929460.539407-CDS-H-paniculata_contig19066:2734..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 2735..2819 +
1691480871.273472-CDS-H-paniculata_contig19066:2734..28191691480871.273472-CDS-H-paniculata_contig19066:2734..2819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 2735..2819 +
1622929460.5532413-CDS-H-paniculata_contig19066:3228..37051622929460.5532413-CDS-H-paniculata_contig19066:3228..3705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 3229..3705 +
1691480871.2810607-CDS-H-paniculata_contig19066:3228..37051691480871.2810607-CDS-H-paniculata_contig19066:3228..3705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19066 3229..3705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19066.4780.1

>prot_H-paniculata_contig19066.4780.1 ID=prot_H-paniculata_contig19066.4780.1|Name=mRNA_H-paniculata_contig19066.4780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MIFLWGTDNGKVKFSMRPSDHDISQDVDEVSSIGGLTSVATLMERQRRKG
LVTEDGDSVHSGGYLDRMEDLLADDQSATSPRWDGREFFAEERMGGVEDG
SGTAVAADIPIVGNGEDAADASVKEDDDASEVATAAPSANLPEITATAEN
NPAAAAAAAADDDNGNFYGVEQPPMDTSAFVLPDTLNKAAAKNVKNGHLA
GSSRGGDGVAASPSTNGERRQDPLLPRSVAGGFDGSGLSEEKYGERGKHS
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mRNA from alignment at H-paniculata_contig19066:2025..3705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19066.4780.1 ID=mRNA_H-paniculata_contig19066.4780.1|Name=mRNA_H-paniculata_contig19066.4780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1681bp|location=Sequence derived from alignment at H-paniculata_contig19066:2025..3705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACGGGAGGGTTCGAGGGAATGATATTCCTGTGGGGCACCGACAACGGC
AAGGTCAAGTTCTCCATGCGGCCATCCGACCATGACATCAGCCAGGTCAG
ATGCTGAGTACTCATGCCCTTCCTCACGTCCTCCGATACGTGACTATGAG
GACTCCGGTAGGGGCAAGCGATATCAACGAGGAGAGTGTAAATGTGCTTT
CCGTCATTCACTTTACCCTGAATTCTCGAGGCAATATTGTGAAGAAGCTC
TTGATATTTGCGGAGTTGTGATATAAGAGCACGAGTATTTCATATTCAAC
CCGGCTCTCGAGCTAACCCTCTCCCCTCCCCCCTCCTCCCTCCCCCCGTC
CGCGCCCCGGTCCGAAGAATTTACATGATTTAGTATATTTAATCCACCAT
TGCCGCGTTGTTCGTCTCTTCCCTCTACAAGGATGTTGACGAGGTGTCTT
CCATCGGGGGATTGACGAGCGTCGCGACCTTGATGGAGAGACAACGAAGA
AAAGGCCTGGTGACAGAGGACGGTGACAGTGTACATTCCGGCGGGTGAGA
GGAAAAGATCGAGCATGTGATAAATGCCTACCCGTTTCTGTCGTGCCAAC
TCATTCTCAAAAGTATTACTCAGCGGCCGCCACCGTCGCCTGCACGATCT
CTCGTCTCTGTCTCTGTCTCTCTCTCTCTCCCTCCGGTTTTTGTTCATGT
ACTATTTCAGCTATCTGGACCGGATGGAAGACCTTCTGGCGGATGATCAA
TCCGCCACCTCCCCGCGTTGGGACGGAAGGGAGTTCTTCGCCGAGGTGAG
CGGACTCAAACTGACAAAAGCCGATCGGGAAAAATACACGTTTTTCAAAA
TCACCCACAAAACGAGAACATATTGACATCTCAAAAATTGTGTATTTGCG
ACCGTCAGACAGATTATGCTATTACGAAATAAGTTTGATGTTCCCCTCTT
GCTAGTTTGGTTCATTCGTGGGTAATAACAAGTAGTCCAGCAGCTTGAGG
ATGCTGAGCATACCTCCATTGTGTTTTATGGTTATCGTTCCCTCCCGTTC
CCTCGATCTCTCTCGCCATCCCTGGCCAAATGTGAAAGCGGAAATATTCG
TATGCTCGTGTATGACCCTCCCTCGGTTTCGTTCCTTCCCTCCTTCCTCT
CGCGGGTCCTCTCCCATGCTCTCCATTTTCCACATCATGCACCCCCGCCG
ACAGGAACGCATGGGGGGCGTTGAAGACGGCTCAGGTACGGCCGTAGCCG
CTGACATTCCGATAGTCGGCAACGGCGAAGATGCTGCTGACGCGTCGGTG
AAAGAAGATGACGATGCTTCTGAGGTGGCGACGGCCGCACCGTCCGCGAA
TTTACCCGAAATTACGGCAACAGCAGAAAACAATCCAGCAGCAGCAGCAG
CAGCAGCAGCAGATGATGATAACGGCAACTTCTACGGCGTCGAACAGCCG
CCAATGGACACATCAGCCTTCGTGTTGCCGGACACGCTGAACAAGGCTGC
CGCCAAGAACGTAAAAAATGGCCACTTGGCGGGGAGCTCCCGCGGCGGCG
ACGGTGTGGCTGCATCACCGAGTACAAATGGGGAGAGAAGGCAAGACCCC
TTGCTACCGAGGTCCGTTGCTGGTGGTTTCGATGGCTCGGGATTGTCGGA
GGAGAAATATGGAGAGAGGGGGAAGCACTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig19066:2025..3705+

>mRNA_H-paniculata_contig19066.4780.1 ID=mRNA_H-paniculata_contig19066.4780.1|Name=mRNA_H-paniculata_contig19066.4780.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig19066:2025..3705+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATATTCCTGTGGGGCACCGACAACGGCAAGGTCAAGTTCTCCATGCG
GCCATCCGACCATGACATCAGCCAGATGATATTCCTGTGGGGCACCGACA
ACGGCAAGGTCAAGTTCTCCATGCGGCCATCCGACCATGACATCAGCCAG
GATGTTGACGAGGTGTCTTCCATCGGGGGATTGACGAGCGTCGCGACCTT
GATGGAGAGACAACGAAGAAAAGGCCTGGTGACAGAGGACGGTGACAGTG
TACATTCCGGCGGGATGTTGACGAGGTGTCTTCCATCGGGGGATTGACGA
GCGTCGCGACCTTGATGGAGAGACAACGAAGAAAAGGCCTGGTGACAGAG
GACGGTGACAGTGTACATTCCGGCGGCTATCTGGACCGGATGGAAGACCT
TCTGGCGGATGATCAATCCGCCACCTCCCCGCGTTGGGACGGAAGGGAGT
TCTTCGCCGAGCTATCTGGACCGGATGGAAGACCTTCTGGCGGATGATCA
ATCCGCCACCTCCCCGCGTTGGGACGGAAGGGAGTTCTTCGCCGAGGAAC
GCATGGGGGGCGTTGAAGACGGCTCAGGTACGGCCGTAGCCGCTGACATT
CCGATAGTCGGCAACGGCGAAGATGCTGCTGACGCGTCGGTGAAAGAAGA
TGACGATGCTTCTGAGGTGGCGACGGCCGCACCGTCCGCGAATTTACCCG
AAATTACGGCAACAGCAGAAAACAATCCAGCAGCAGCAGCAGCAGCAGCA
GCAGATGATGATAACGGCAACTTCTACGGCGTCGAACAGCCGCCAATGGA
CACATCAGCCTTCGTGTTGCCGGACACGCTGAACAAGGCTGCCGCCAAGA
ACGTAAAAAATGGCCACTTGGCGGGGAGCTCCCGCGGCGGCGACGGTGTG
GCTGCATCACCGAGTACAAATGGGGAGAGAAGGCAAGACCCCTTGCTACC
GAGGTCCGTTGCTGGTGGTTTCGATGGCTCGGGATTGTCGGAGGAGAAAT
ATGGAGAGAGGGGGAAGCACTCCGAACGCATGGGGGGCGTTGAAGACGGC
TCAGGTACGGCCGTAGCCGCTGACATTCCGATAGTCGGCAACGGCGAAGA
TGCTGCTGACGCGTCGGTGAAAGAAGATGACGATGCTTCTGAGGTGGCGA
CGGCCGCACCGTCCGCGAATTTACCCGAAATTACGGCAACAGCAGAAAAC
AATCCAGCAGCAGCAGCAGCAGCAGCAGCAGATGATGATAACGGCAACTT
CTACGGCGTCGAACAGCCGCCAATGGACACATCAGCCTTCGTGTTGCCGG
ACACGCTGAACAAGGCTGCCGCCAAGAACGTAAAAAATGGCCACTTGGCG
GGGAGCTCCCGCGGCGGCGACGGTGTGGCTGCATCACCGAGTACAAATGG
GGAGAGAAGGCAAGACCCCTTGCTACCGAGGTCCGTTGCTGGTGGTTTCG
ATGGCTCGGGATTGTCGGAGGAGAAATATGGAGAGAGGGGGAAGCACTCC
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