mRNA_H-paniculata_contig19060.4779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19060.4779.1
Unique NamemRNA_H-paniculata_contig19060.4779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19060.4779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19060contigH-paniculata_contig19060:672..1037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929460.437706-CDS-H-paniculata_contig19060:671..10371622929460.437706-CDS-H-paniculata_contig19060:671..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19060 672..1037 +
1691480871.233888-CDS-H-paniculata_contig19060:671..10371691480871.233888-CDS-H-paniculata_contig19060:671..1037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19060 672..1037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19060.4779.1prot_H-paniculata_contig19060.4779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19060 672..1037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19060.4779.1

>prot_H-paniculata_contig19060.4779.1 ID=prot_H-paniculata_contig19060.4779.1|Name=mRNA_H-paniculata_contig19060.4779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
LSQSPATCPVPSAARLVGLPDPPPPRSPALPPPPFPSSSLLLVPPLSSRS
PDPLLFPRLSPAPAPPEVPRPPLLSPPFESVVPPLSSFRTPPAPSLLHLQ
HGVRSRWRRHRHLPVPLRSQG*
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mRNA from alignment at H-paniculata_contig19060:672..1037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19060.4779.1 ID=mRNA_H-paniculata_contig19060.4779.1|Name=mRNA_H-paniculata_contig19060.4779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig19060:672..1037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCCCAGTCGCCAGCGACATGCCCGGTCCCATCAGCAGCGCGGCTGGT
AGGTCTCCCTGATCCTCCGCCTCCAAGGTCGCCGGCGTTGCCACCGCCCC
CGTTTCCGTCTTCGTCGCTTTTGTTAGTTCCTCCGCTTTCATCGCGGTCG
CCTGATCCGCTGCTGTTTCCACGACTCTCGCCGGCTCCCGCGCCGCCGGA
GGTGCCTAGGCCGCCGCTGTTATCTCCGCCATTTGAATCAGTAGTCCCTC
CGTTATCCTCGTTCCGCACTCCCCCCGCTCCATCGCTCCTTCATTTACAG
CACGGCGTCCGCTCTCGATGGCGACGCCACCGTCATCTCCCCGTGCCTCT
CCGGTCCCAGGGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig19060:672..1037+

>mRNA_H-paniculata_contig19060.4779.1 ID=mRNA_H-paniculata_contig19060.4779.1|Name=mRNA_H-paniculata_contig19060.4779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig19060:672..1037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCCCAGTCGCCAGCGACATGCCCGGTCCCATCAGCAGCGCGGCTGGT
AGGTCTCCCTGATCCTCCGCCTCCAAGGTCGCCGGCGTTGCCACCGCCCC
CGTTTCCGTCTTCGTCGCTTTTGTTAGTTCCTCCGCTTTCATCGCGGTCG
CCTGATCCGCTGCTGTTTCCACGACTCTCGCCGGCTCCCGCGCCGCCGGA
GGTGCCTAGGCCGCCGCTGTTATCTCCGCCATTTGAATCAGTAGTCCCTC
CGTTATCCTCGTTCCGCACTCCCCCCGCTCCATCGCTCCTTCATTTACAG
CACGGCGTCCGCTCTCGATGGCGACGCCACCGTCATCTCCCCGTGCCTCT
CCGGTCCCAGGGTTGACTCTCCCAGTCGCCAGCGACATGCCCGGTCCCAT
CAGCAGCGCGGCTGGTAGGTCTCCCTGATCCTCCGCCTCCAAGGTCGCCG
GCGTTGCCACCGCCCCCGTTTCCGTCTTCGTCGCTTTTGTTAGTTCCTCC
GCTTTCATCGCGGTCGCCTGATCCGCTGCTGTTTCCACGACTCTCGCCGG
CTCCCGCGCCGCCGGAGGTGCCTAGGCCGCCGCTGTTATCTCCGCCATTT
GAATCAGTAGTCCCTCCGTTATCCTCGTTCCGCACTCCCCCCGCTCCATC
GCTCCTTCATTTACAGCACGGCGTCCGCTCTCGATGGCGACGCCACCGTC
ATCTCCCCGTGCCTCTCCGGTCCCAGGGTTGA
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