mRNA_H-paniculata_contig1906.4778.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1906.4778.1
Unique NamemRNA_H-paniculata_contig1906.4778.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: D8LJF7_ECTSI (Photosystem II oxygen evolution complex protein PsbP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 4.950e-42
Identity = 84/115 (73.04%), Postives = 95/115 (82.61%), Query Frame = 1 
Query:    1 MSADGPSTRVQFLSSVATAAVAATSSAVMLPSLALAEE-----KQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDTQVKLL 330
            MSA+GPS R QFL++  +AAVAA  SAVMLP +A+A+E     KQV L TTKLGG+LEPFAD SKGYRLAKPLGWNRYDG SGEY VKMVDLVDPT +ILLTNSPVKSDT++  L
Sbjct:   38 MSAEGPSDRAQFLTT--SAAVAA--SAVMLPLVAVADEGETGSKQVKLVTTKLGGKLEPFADVSKGYRLAKPLGWNRYDGTSGEYTVKMVDLVDPTTLILLTNSPVKSDTELSTL 148
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A7S3LCU1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LCU1_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.870e-16
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:   64 AATSSAVMLPSLALAEE--KQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDTQ 318
            A TS+AV+LP+L    E  +      T++GG LEPF D ++G RL  P GWN++DG  G Y +K  DLVDPTE I L++SPVKS T+
Sbjct:   36 ALTSAAVLLPNLPAQAEVTEDTPRVVTRMGGLLEPFQDGTRGIRLMAPSGWNKFDGEVGAYDIKWQDLVDPTENIKLSSSPVKSTTE 122
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A7S2YI26_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YI26_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.710e-14
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   55 AAVAATSSAVMLPSLALAEEKQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDTQ 318
            A VA ++ A  + S A+A+E      TT++GG LEPF D  +  R+  P GWN++DG  G + +K  DLVDPTE I +T+SPVKS T+
Sbjct:   46 AVVATSTLAAPIASAAVADETP--RVTTRMGGLLEPFQDGPRSIRMMAPSGWNKFDGEVGAFDLKWQDLVDPTENIKITSSPVKSTTE 131
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A7S3C4X1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C4X1_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 2.120e-13
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   88 LPSLALAEEKQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDTQVKLL 330
            L + A+AEE   S    K+GG LEPF +TSKG++L KP GW +YD   G Y VK  D++DP E +++++ PV++ T V  L
Sbjct:   68 LAACAVAEEPGFS----KMGGLLEPFIETSKGFKLYKPSGWTQYDTDPGVYDVKFADIIDPFETVIVSSQPVQTATSVSAL 144
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A8J6C9Q6_DIALT (PsbP domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C9Q6_DIALT)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-13
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   82 VMLPSLALAEEKQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKS 309
            V LP+LA    +++S +TT++GG L+ F+D SKG+ + KP  WN++DG  GEY  K  DL+  TE I++++SPV S
Sbjct:   63 VALPALAADGVREISPSTTRMGGLLDAFSDISKGFSVYKPSTWNKFDGTPGEYEAKWQDLIGYTEQIIVSSSPVTS 138
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A7S2A319_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A319_TRICV)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   88 LPSLALAEEKQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDT 315
            LP++A   E+   +TT ++GG LEP+ D+++G+R   P GWN++DG  G Y  K  DLVD TE I L+++PVKS T
Sbjct:   56 LPAIAAVTEETPRITT-RMGGLLEPYQDSTRGWRTLVPSGWNKFDGEVGAYDTKWQDLVDNTENIKLSSTPVKSTT 130
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A7S2RMC0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RMC0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-12
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:   88 LPSLALAE-EKQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDT 315
            LPS+A A  E++V+  TT++GG LE + DT++G  L  P GWN+++G  G Y +K  DLV+ TE I ++++PVKS T
Sbjct:   55 LPSMAFAAPEEEVARITTRMGGNLERYGDTTRGLSLMVPSGWNKFEGEVGAYDLKWEDLVEKTENIKISSTPVKSTT 131
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A7S2PDK0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDK0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.540e-12
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   88 LPSLALA-EEKQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDT 315
            LP++ALA    +   TTT++GG LE + D+++G+ +  P GWN+++G  G Y VK  DLVDP E I ++++PVKS T
Sbjct:   66 LPNVALAYPSDETPKTTTRMGGLLEKYQDSTRGWTILCPSGWNKFEGEVGAYDVKWQDLVDPRENIKVSSTPVKSTT 142
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: B7G6V4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6V4_PHATC)

HSP 1 Score: 67.4 bits (163), Expect = 2.750e-11
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:   16 PSTRVQFLSSVATAAVAATSSAVMLPSLALAEEKQVSLTTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDTQ 318
            P +R Q   +  +AAV   SS +    +      +     T++GG LE F D  +G+R+  P GWN+++G  G Y VK  DLVDP+E + ++++PVKS T+
Sbjct:   26 PLSRRQAFQAATSAAVIGVSSTIAGHPVQAYPSDETPRVATRMGGLLEAFQDGPRGFRIMIPSGWNKFEGEVGAYDVKWQDLVDPSENVKISSTPVKSTTE 126
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BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Match: A0A0M0JUJ4_9EUKA (Photosystem ii oxygen evolving complex protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUJ4_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 4.440e-11
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  130 TTTKLGGQLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSPVKSDTQVKLL 330
            T +K+GG LEP+ DT KGY+L  P GWN+++   G Y VK  D+++P   + ++ SPV + T V  L
Sbjct:   54 TFSKMGGLLEPYIDTQKGYKLYSPKGWNKFESDPGVYDVKFQDVIEPETTVQVSTSPVATATSVSAL 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1906.4778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LJF7_ECTSI4.950e-4273.04Photosystem II oxygen evolution complex protein Ps... [more]
A0A7S3LCU1_9STRA1.870e-1650.57Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2YI26_9STRA9.710e-1446.59Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3C4X1_9EUKA2.120e-1345.68Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8J6C9Q6_DIALT2.150e-1346.05PsbP domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S2A319_TRICV1.040e-1247.37Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2RMC0_9STRA1.050e-1246.75Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2PDK0_9STRA6.540e-1245.45Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B7G6V4_PHATC2.750e-1136.63Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A0M0JUJ4_9EUKA4.440e-1143.28Photosystem ii oxygen evolving complex protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1906contigH-paniculata_contig1906:22581..23815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue3.8e-33
Seed eggNOG ortholog2880.D8LJF7
Preferred namePSBP3
KEGG koko:K02717
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
EggNOG free text desc.photosynthesis
EggNOG OGs2QU2U@2759,COG0459@1
Ec32 ortholog descriptionPhotosystem II oxygen evolution complex protein PsbP
Ec32 orthologEc-06_010000.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons2
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929460.3733757-CDS-H-paniculata_contig1906:22580..226971622929460.3733757-CDS-H-paniculata_contig1906:22580..22697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1906 22581..22697 +
1691480871.214106-CDS-H-paniculata_contig1906:22580..226971691480871.214106-CDS-H-paniculata_contig1906:22580..22697Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1906 22581..22697 +
1622929460.3868575-CDS-H-paniculata_contig1906:23587..238151622929460.3868575-CDS-H-paniculata_contig1906:23587..23815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1906 23588..23815 +
1691480871.22499-CDS-H-paniculata_contig1906:23587..238151691480871.22499-CDS-H-paniculata_contig1906:23587..23815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1906 23588..23815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1906.4778.1prot_H-paniculata_contig1906.4778.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1906 22581..23815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1906.4778.1

>prot_H-paniculata_contig1906.4778.1 ID=prot_H-paniculata_contig1906.4778.1|Name=mRNA_H-paniculata_contig1906.4778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MSADGPSTRVQFLSSVATAAVAATSSAVMLPSLALAEEKQVSLTTTKLGG
QLEPFADTSKGYRLAKPLGWNRYDGASGEYVVKMVDLVDPTEVILLTNSP
VKSDTQVKLLTTIE*
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mRNA from alignment at H-paniculata_contig1906:22581..23815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1906.4778.1 ID=mRNA_H-paniculata_contig1906.4778.1|Name=mRNA_H-paniculata_contig1906.4778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-paniculata_contig1906:22581..23815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGCTGATGGACCGTCGACTAGGGTGCAGTTTTTGAGCTCTGTCGC
AACCGCTGCTGTCGCGGCCACGTCTTCCGCCGTTATGTTGCCGTCGTTGG
CATTGGCAGAGGAGAAGGTGAGGCCACACAAGTGCAATTTGCCTACGCGG
GATGTCCTGGTACTGGCTGTTATGGTACTGGCATTAATGTTCCATCTGTT
GACTCCCGACCGACGGTTGTCACCATGGGAAAAGGCCGTAAGTAGCCGAG
CCTAATCGCGTCTTCACTTCGACGGTGCACATGCTTTGGAGATGATCACG
AATTCGGCCGATGCTGTAACTTTGCTCCAATGAACTTCAAATTAGTTCGA
AGATTTTCGTGCGTTTCACAACACCTCGGCGTGTTCCGACAATATCATAC
ATACAGGAATTTATCGTCGCAGTCTGCAAATAACTCCAAAGAAAACGCAC
TGCCCCTAAAAGATAACTACCCATAGGTCTGAACGTCGATAGTGGCGAGC
TCTTGGCGCAAGGCTTTGGCAACCAGATCTCCCCGCAAACCGTTGAGGGC
TATTAGATCCCAAATCTGAATTCCCCGCATCATTGCGCCATTATTGCCAA
TCATCACACTCCCCGCCCCGTGTGTAGTGCGTGCGAGGACCGAGTTCAAG
TCGTGAGAGAATGCCTCCTACATAAAAAGAGAGATATTTATGTGAATGAG
CTGGGAAACGTGGAAGCATGTGATAGAGAGGCCCCTGAATCCTGGGATTC
TGAAAAGAAGACGATAGCGGTGTAGGAGGTAAAAATTGGTCTGTACAGGC
GAGGGTTTGGGTAGATGGCGTAGGCGAGACGTTTTCTGTGTAGCCATAAA
AATTGGCCATTGCAAATCGCCCTGGCGGGAACAAAGCTTTGTCCTTCCAA
GGGCACATGGTCAAAGGTCTAACAACTGCGGCATGCAAAACGTGAGTATG
CCCTCCTTTCATTTGTTGACGATTTTCGTCGCCTAGGTCGCATCCGAAGA
AGTGGAGCAGGTGAGCTTAACAACAACCAAGTTGGGAGGTCAGCTCGAAC
CGTTCGCCGATACATCGAAGGGATACCGACTGGCCAAGCCATTGGGGTGG
AACCGTTACGATGGCGCTTCGGGCGAATACGTCGTGAAAATGGTGGATCT
TGTCGACCCTACGGAGGTTATCTTGCTCACCAACTCGCCCGTGAAGTCGG
ACACTCAGGTGAAACTCTTGACAACAATAGAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1906:22581..23815+

>mRNA_H-paniculata_contig1906.4778.1 ID=mRNA_H-paniculata_contig1906.4778.1|Name=mRNA_H-paniculata_contig1906.4778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig1906:22581..23815+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGCTGATGGACCGTCGACTAGGGTGCAGTTTTTGAGCTCTGTCGC
AACCGCTGCTGTCGCGGCCACGTCTTCCGCCGTTATGTTGCCGTCGTTGG
CATTGGCAGAGGAGAAGATGTCCGCTGATGGACCGTCGACTAGGGTGCAG
TTTTTGAGCTCTGTCGCAACCGCTGCTGTCGCGGCCACGTCTTCCGCCGT
TATGTTGCCGTCGTTGGCATTGGCAGAGGAGAAGCAGGTGAGCTTAACAA
CAACCAAGTTGGGAGGTCAGCTCGAACCGTTCGCCGATACATCGAAGGGA
TACCGACTGGCCAAGCCATTGGGGTGGAACCGTTACGATGGCGCTTCGGG
CGAATACGTCGTGAAAATGGTGGATCTTGTCGACCCTACGGAGGTTATCT
TGCTCACCAACTCGCCCGTGAAGTCGGACACTCAGGTGAAACTCTTGACA
ACAATAGAATAGCAGGTGAGCTTAACAACAACCAAGTTGGGAGGTCAGCT
CGAACCGTTCGCCGATACATCGAAGGGATACCGACTGGCCAAGCCATTGG
GGTGGAACCGTTACGATGGCGCTTCGGGCGAATACGTCGTGAAAATGGTG
GATCTTGTCGACCCTACGGAGGTTATCTTGCTCACCAACTCGCCCGTGAA
GTCGGACACTCAGGTGAAACTCTTGACAACAATAGAATAG
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