mRNA_H-paniculata_contig19048.4773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19048.4773.1
Unique NamemRNA_H-paniculata_contig19048.4773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 1.020e-9
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 CFCGLATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQFADYT----LEGCFVDSSVARVLTADATANGAMSTDV 222
            C+CG    D    GEST C  PC+GDAD++CGG +A N+Y F   T    L GC+ D S AR++    T   +M+ ++
Sbjct:  141 CWCGSDGADYALHGESTECTYPCSGDADQLCGGFDAANVYLFTGETSTSSLVGCYQDESDARIMEFALTDTSSMTMEM 218          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A177FBF7_9EURO (Uncharacterized protein n=1 Tax=Fonsecaea monophora TaxID=254056 RepID=A0A177FBF7_9EURO)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-9
Identity = 33/100 (33.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:    1 CFCGLATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQ------------FADYTLEGCFVDSSVA-RVLTADATANGAMSTDVRMNSLCRKRGSQF 261
            C+CG     P  +   T C MPC G+A ++CGGP+ +++Y              A Y+ +GCF D S A R L   +T+N    T     S C+ RG ++
Sbjct:   26 CYCGYGLS-PSTVVNVTGCTMPCAGNAQQMCGGPSRLSVYNNTSLSPPSAKAIIAGYSYQGCFTDPSAAQRTLQGYSTSNSTSMTQEFCVSACQTRGYKY 124          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A3M7NB40_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 135597 TaxID=2249420 RepID=A0A3M7NB40_9EURO)

HSP 1 Score: 62.8 bits (151), Expect = 1.580e-9
Identity = 35/85 (41.18%), Postives = 44/85 (51.76%), Query Frame = 1
Query:    1 CFCG--LATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQ-----------FADYTLEGCFVDSSVARVLTADATANGAMST 216
            CFCG  LA         S  CNMPCTGD+ + CGGP+ ++LYQ           F+ YT +GC+ DS   R LTA  T +    T
Sbjct: 1197 CFCGNTLAAGST-NASSSAECNMPCTGDSTQTCGGPSRLSLYQNTAYTPLQSPSFSGYTYQGCYTDSVDNRTLTAARTDSSTAMT 1280          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A0D2GGW7_XYLBA (Uncharacterized protein n=2 Tax=Cladophialophora TaxID=82105 RepID=A0A0D2GGW7_XYLBA)

HSP 1 Score: 62.8 bits (151), Expect = 1.590e-9
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:    1 CFCGLATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQ------------FADYTLEGCFVDSSVA-RVLTADATANGAMSTDVRMNSLCRKRGSQF 261
            C+C  +   P  +  +T C+MPC G+A ++CGGP+ +++Y                YT +GCF D S A R L   +T+NG   T     S C+ RG ++
Sbjct: 1687 CYCAYSLS-PSTVLNATGCSMPCAGNAQQMCGGPSRLSVYNNTSLSPPSVKASIGGYTYQGCFTDPSAAQRTLQGYSTSNGTSMTQEFCISACQARGYKY 1785          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A0D2FB61_9EURO (Uncharacterized protein n=1 Tax=Fonsecaea pedrosoi CBS 271.37 TaxID=1442368 RepID=A0A0D2FB61_9EURO)

HSP 1 Score: 62.4 bits (150), Expect = 2.170e-9
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:    1 CFCGLATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQ------------FADYTLEGCFVDSSVA-RVLTADATANGAMSTDVRMNSLCRKRGSQF 261
            C+CG     P  +  +T C MPC G+A ++CGGP+ +++Y              A Y+ +GCF D S A R L   +T+N    T     S C+ RG ++
Sbjct: 1692 CYCGYGLS-PSTVVNATGCTMPCAGNAQQMCGGPSRLSVYNNTSLSPPSAKAIIAGYSYQGCFTDPSAAQRTLQGYSTSNSTSMTQEFCVSACQTRGYKY 1790          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A0D2AF73_9EURO (Uncharacterized protein n=1 Tax=Cladophialophora immunda TaxID=569365 RepID=A0A0D2AF73_9EURO)

HSP 1 Score: 62.4 bits (150), Expect = 2.170e-9
Identity = 35/100 (35.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:    1 CFCGLATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQ------------FADYTLEGCFVDSSVA-RVLTADATANGAMSTDVRMNSLCRKRGSQF 261
            C+CG  T  P     +T CNMPC G+A + CGGP+ +++Y              A YT +GCF D S + R L   +T+N    T     S C+ RG ++
Sbjct: 1697 CYCGY-TLAPSTAVNATGCNMPCAGNAQQTCGGPSRLSVYNNTSLSPPGAKATIAGYTHQGCFTDPSASQRTLQGYSTSNATSMTQEFCISACQTRGYKY 1795          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: UPI0018EC2E0B (WSC domain-containing protein n=1 Tax=Pseudomonas sp. ASV14 TaxID=243969 RepID=UPI0018EC2E0B)

HSP 1 Score: 59.7 bits (143), Expect = 2.220e-9
Identity = 29/96 (30.21%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    1 CFCGLATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQF------------ADYTLEGCFVDSSVARVLTADATANGAMSTDVRMNSLCRKRG 252
            C+CG +     E  + + CN+PC+GD  + CGG NA+++++             +DY  +GC+ DS   R LT  A  +G+  T  +  + C+++G
Sbjct:   31 CYCGGSV--RSEKTDESQCNLPCSGDKSQTCGGDNALSVWEDPTFSQTPEEVSESDYAAQGCYTDSGSGRALTWPAEIDGSDLTPSKCIAACKEQG 124          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A8H5F657_9AGAR (Uncharacterized protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5F657_9AGAR)

HSP 1 Score: 61.6 bits (148), Expect = 3.770e-9
Identity = 31/69 (44.93%), Postives = 37/69 (53.62%), Query Frame = 1
Query:   55 CNMPCTGDADEICGGPNAINLYQFADYTLEGCFVDSSVARVLTADATANGAMSTDVRMNSLCRKRGSQF 261
            CNM CTGDA E CGGPN I  +  A ++  GCF D +  R L   AT + A  T  +  S C   G QF
Sbjct:   38 CNMECTGDATETCGGPNRIITFSNAGWSSVGCFTDQAPERTLITAATTDPAGMTIEKCASFCMPLGFQF 106          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A3M0W0T4_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 134920 TaxID=2249417 RepID=A0A3M0W0T4_9EURO)

HSP 1 Score: 60.5 bits (145), Expect = 1.020e-8
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 1
Query:    1 CFCG--LATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQ-----------FADYTLEGCFVDSSVARVLTADATANGAM 210
            CFCG  LA         S  CNM C+GDA EICGGP+ ++LY+           F+ Y  +GC+ DS   R L A  T + AM
Sbjct:  906 CFCGNTLAAGST-NASSSAECNMACSGDASEICGGPSRLSLYENTAYSTPQSPSFSGYIYQGCYTDSVANRSLAAARTDSNAM 987          
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Match: A0A8H5BLQ2_9AGAR (Uncharacterized protein n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BLQ2_9AGAR)

HSP 1 Score: 59.7 bits (143), Expect = 1.830e-8
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   55 CNMPCTGDADEICGGPNAINLYQF---ADYTLEGCFVDSSVARVLTADATANGAMSTDVRMNSLCRKRGSQF 261
            C+M CTGDA E CGGPN +N+++    A +T  GCF D +  R L   AT + A  T  +  S C   G QF
Sbjct:   79 CDMECTGDATETCGGPNRLNIFKRTIPAGWTSVGCFTDQAPERTLITAATTDPAGMTIEQCASFCTPLGFQF 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19048.4773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEL0_ECTSI1.020e-941.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A177FBF7_9EURO1.310e-933.00Uncharacterized protein n=1 Tax=Fonsecaea monophor... [more]
A0A3M7NB40_9EURO1.580e-941.18Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]
A0A0D2GGW7_XYLBA1.590e-933.00Uncharacterized protein n=2 Tax=Cladophialophora T... [more]
A0A0D2FB61_9EURO2.170e-933.00Uncharacterized protein n=1 Tax=Fonsecaea pedrosoi... [more]
A0A0D2AF73_9EURO2.170e-935.00Uncharacterized protein n=1 Tax=Cladophialophora i... [more]
UPI0018EC2E0B2.220e-930.21WSC domain-containing protein n=1 Tax=Pseudomonas ... [more]
A0A8H5F657_9AGAR3.770e-944.93Uncharacterized protein n=1 Tax=Psilocybe cf. subv... [more]
A0A3M0W0T4_9EURO1.020e-840.96Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]
A0A8H5BLQ2_9AGAR1.830e-843.06Uncharacterized protein n=1 Tax=Psilocybe cf. subv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19048contigH-paniculata_contig19048:4725..4985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.4725072-CDS-H-paniculata_contig19048:4724..49851622929459.4725072-CDS-H-paniculata_contig19048:4724..4985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19048 4725..4985 -
1691480870.771113-CDS-H-paniculata_contig19048:4724..49851691480870.771113-CDS-H-paniculata_contig19048:4724..4985Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19048 4725..4985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19048.4773.1prot_H-paniculata_contig19048.4773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19048 4725..4985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19048.4773.1

>prot_H-paniculata_contig19048.4773.1 ID=prot_H-paniculata_contig19048.4773.1|Name=mRNA_H-paniculata_contig19048.4773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
CFCGLATDDPFELGESTSCNMPCTGDADEICGGPNAINLYQFADYTLEGC
FVDSSVARVLTADATANGAMSTDVRMNSLCRKRGSQF
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mRNA from alignment at H-paniculata_contig19048:4725..4985-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19048.4773.1 ID=mRNA_H-paniculata_contig19048.4773.1|Name=mRNA_H-paniculata_contig19048.4773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig19048:4725..4985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTCTGCGGGCTTGCTACGGACGACCCATTCGAGCTTGGCGAGTCCAC CAGCTGCAATATGCCGTGCACCGGTGACGCTGACGAGATTTGTGGTGGCC CCAACGCTATCAATTTGTACCAGTTTGCAGACTACACCCTTGAGGGGTGC TTCGTTGACAGCTCCGTTGCCCGCGTGCTGACTGCGGATGCGACTGCCAA TGGTGCAATGTCCACAGATGTGAGAATGAATTCACTTTGTAGGAAGCGGG GTAGTCAGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig19048:4725..4985-

>mRNA_H-paniculata_contig19048.4773.1 ID=mRNA_H-paniculata_contig19048.4773.1|Name=mRNA_H-paniculata_contig19048.4773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig19048:4725..4985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTTCTGCGGGCTTGCTACGGACGACCCATTCGAGCTTGGCGAGTCCAC
CAGCTGCAATATGCCGTGCACCGGTGACGCTGACGAGATTTGTGGTGGCC
CCAACGCTATCAATTTGTACCAGTTTGCAGACTACACCCTTGAGGGGTGC
TTCGTTGACAGCTCCGTTGCCCGCGTGCTGACTGCGGATGCGACTGCCAA
TGGTGCAATGTCCACAGATGTGAGAATGAATTCACTTTGTAGGAAGCGGG
GTAGTCAGTTTTGCTTCTGCGGGCTTGCTACGGACGACCCATTCGAGCTT
GGCGAGTCCACCAGCTGCAATATGCCGTGCACCGGTGACGCTGACGAGAT
TTGTGGTGGCCCCAACGCTATCAATTTGTACCAGTTTGCAGACTACACCC
TTGAGGGGTGCTTCGTTGACAGCTCCGTTGCCCGCGTGCTGACTGCGGAT
GCGACTGCCAATGGTGCAATGTCCACAGATGTGAGAATGAATTCACTTTG
TAGGAAGCGGGGTAGTCAGTTT
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