mRNA_H-paniculata_contig19037.4770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19037.4770.1
Unique NamemRNA_H-paniculata_contig19037.4770.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 186 bits (473), Expect = 8.310e-49
Identity = 113/296 (38.18%), Postives = 163/296 (55.07%), Query Frame = 1
Query:  223 LLHERLGHVR--------DLSTVARQQGIRLNGKLGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPV-DKSFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYG-VCY--IPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            L H+RLGH+         +   V     +  NG  G+C  C +GK +++ +      R +  L LVHT   GP+   S  G R+ I F+DDY++    ++L +KSEALRA KEF+       GL +  LRS +GGEY    F+ +C ENGIK++ +AAY PQ NG+AER  RSI  MAR  M+  ++ RR+  EAV  AV+ LNR P+      TP E+W    P ++H        VRV+G V Y  +P     +   ++   VF+   ++S +YR+YN E K + +SR+VR DE
Sbjct:  437 LWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEH--------VRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A6S7JQN7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JQN7_PARCT)

HSP 1 Score: 180 bits (457), Expect = 3.630e-47
Identity = 118/374 (31.55%), Postives = 187/374 (50.00%), Query Frame = 1
Query:    4 RIIFCNVLYVPEASDSILSIERMVSQGMEAYFGSERRWLH-YNGITIPFEHTSRKEYSLRVINNDKRQQVV----NTKLLHERLGHVRD--LSTVARQ---QGIRLNG--KLGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVD-KSFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGT-PYEKWHGETPKLDHLRSSRLVRVRVYGV---CYIPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            R + CNVLYVP+ + ++ S+   V++G    F  ++ W+   +G        + K Y L   +       +    ++ L H+RLGHV +  L++  +    +GI      KL  C AC  GK  ++P     E R++  L LVH+   GP+  +SFGG R+ + F DDY++    Y ++QK E L   KEFE       G  I  LR+  GGEY    F+ +    GIK E +  Y PQ NGVAER  R++ + AR+ +  A + + Y  EA+ +AVY  NR+PT    G T PYE+W+   P + H R        V+G     ++P +   +  ++A    F+ Y   S  YR+++   + + + R+V  +E
Sbjct:  326 RGVLCNVLYVPKLTSNLFSVRAAVAKGNVVKFRGDKCWISDASGRLRGMGSLANKLYKLDCEDVSNGHATLASQESSDLWHQRLGHVHEQRLNSCIKNNIVKGICCENVDKLSFCEACLAGKMHRKPFLAREEIRSSHKLQLVHSDVCGPMQTESFGGARYFVTFTDDYSRCCAVYFMKQKLEVLEKFKEFEAAATNEAGRSIGILRTDNGGEYLSTEFQDYLKAKGIKHELTVPYSPQQNGVAERMNRTLVESARSMIAQARLPKMYWAEAISTAVYVRNRMPTTAIKGNTTPYERWYERKPNVSHFR--------VFGCMAFAHVPDSKRQKLDKKAERLRFVGYCRTSKGYRLFDEIKRKMVVRRDVEFNE 691          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9)

HSP 1 Score: 181 bits (460), Expect = 4.430e-47
Identity = 119/364 (32.69%), Postives = 189/364 (51.92%), Query Frame = 1
Query:   19 NVLYVPEASDSILSIERMVSQGMEAYFGSERRWLHYNGITIPFEHTSRKEYSLRVINNDKRQQVV--NTK----LLHERLGHVRDLSTVARQQGIRLNGKLGV--------CSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVDKS-FGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYGVCYIPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVR 1065
             VLYVP    +++SI ++  +G+ A F +    L Y    +         Y LR+  +   + VV  +TK      H RLGH RD + +   +   L   L V        C  C + K ++ P  P  E+ +TE L ++H+   GP++++  GG R+ +  +DD+++    Y L++KSE    ++E+ + +    G     +RS QGGEY  K  R+FC++ GIK EF+AAY PQ NGVAER  RS+ +M R  +  A M +R+  EAV++A Y  NR+P+   +  TP+E W G+ P L +LR    V     G   IP     +   +A    F+ Y  +  +YR+ N++   +Q+SR+VR
Sbjct:  334 GVLYVPTLEGNMISIGKLAEKGVRAVFDNTGCKLVYGNTIVAVADKVSDMYWLRIAQDRVMKSVVKEHTKNCQHTWHRRLGH-RDPAVIGEMKRYDLVSGLKVVDCGIRWTCECCIECKMARSPFPPVAEKTSTEVLDIIHSDVCGPMEETTLGGCRYYMTLIDDHSRYTFVYFLKKKSEVENKIREYVKLVQNQFGRKPRIIRSDQGGEYFSKALRKFCADEGIKMEFTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAVNTACYLQNRLPSAAVDR-TPFEIWFGKKPDLTNLRLFGCV-----GYVLIPSVKRKKLDVKAERMTFVGYSGEHKAYRMLNTKTGEIQISRDVR 690          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A1J3I5V1_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3I5V1_NOCCA)

HSP 1 Score: 174 bits (440), Expect = 4.740e-47
Identity = 115/377 (30.50%), Postives = 187/377 (49.60%), Query Frame = 1
Query:   19 NVLYVPEASDSILSIERMVSQGMEAYFGSERRWLHYNGITIPFEHTSRKEYSLRVIN---------NDKRQQVVNTK---LLHERLGH-----VRDLSTVARQQGI-RLNGKLGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVDK-SFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYG-VCYIPVAAGTQARRQAW-----AAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            NV  VP+ + ++LS+ +M++ G E  F          G  I  +H  RK   + ++N         +++   V   +   L H+RLGH     ++ L +     G+ + N +   C +C   K S+       E R  E L L+H+   GP+   S  G R+ + F+DD  +M   Y L+ KSE  +  K+F+  +       I ++R+ +G EY    F +F  ++GI+++ +A Y PQ NGV+ER  RS+ +MARA +   ++  ++  EAVH+A Y  NR+PTR     TP E W+G  P L+HL+        V+G VCY+ +      +R+ W      AVF+ Y   +  YR+Y  E   + +SR+   DE
Sbjct:    4 NVFLVPKLNKNLLSVPQMMANGYEVIFKK--------GSCIILDHAGRKITEVEMVNKSFPIKWSSSEETAMVAKNEVPELWHQRLGHTGYSNLKILQSTNMVLGLPKFNVEKEGCESCILSKHSRDSFPKESETRAKEKLELIHSDVCGPMQSLSIIGSRYFLTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVENQASCKIKKIRTDRGSEYLSGEFTKFLEDHGIERQLTATYSPQQNGVSERRNRSLVEMARAMIKAKDLPLKFWAEAVHTAAYLQNRIPTRALENKTPLEAWNGTKPSLNHLK--------VFGCVCYVHIP---DEKRKKWDDKSKKAVFVGYSSQTKGYRVYLLEEDKIDVSRDAIFDE 361          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A7D9F0C3_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F0C3_PARCT)

HSP 1 Score: 176 bits (447), Expect = 3.700e-46
Identity = 116/375 (30.93%), Postives = 187/375 (49.87%), Query Frame = 1
Query:    4 RIIFCNVLYVPEASDSILSIERMVSQGMEAYFGSERRWLH-YNGITIPFEHTSRKEYSLRVINNDKRQQVV----NTKLLHERLGHVRD--LSTVARQ---QGIRLNG--KLGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVD-KSFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGG--TPYEKWHGETPKLDHLRSSRLVRVRVYGV---CYIPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            R + CNVLYVP+ + ++ S++  V++G    F  ++ W+   +G        + K Y L   +       +    ++ L H+RLGHV +  L++  +    +GI      KL  C AC  GK  ++P     E R++  L LVH+   GP+  +SFGG  + + F DDY++    Y ++QK E L   KEFE       G  I  LR+  GGEY    F+ +    GIK E +  Y P+ NGVAER  R++ + AR+ +  A + + Y  EA+ +AVY  NR+PT    G   TPYE+W+   P + H R        V+G     ++P +   +  ++A    F+ Y   S  YR+++   + + + R+V  +E
Sbjct:  162 RGVLCNVLYVPKLTSNLFSVQAAVAKGNVVKFRGDKCWISDASGRLRGMGSLANKLYKLDCEDVSDGHATLASQESSDLWHQRLGHVHEQRLNSCIKNNIVKGICCENVDKLSFCEACLAGKMHRKPFLAREEIRSSHKLQLVHSDVCGPMQTESFGGASYFVTFTDDYSRCCAVYFMKQKLEVLEKFKEFEAAATNEAGRSIGILRTDNGGEYPSTEFQDYLKAKGIKHELTVPYSPRQNGVAERMNRTLVESARSMIAQARLPKMYWAEAISTAVYVRNRMPTTAIKGNHTTPYERWYERKPNVSHFR--------VFGCMAFAHVPDSKRQKLDKKAERLRFVGYCRTSKGYRLFDEIKRKMVVRRDVEFNE 528          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A438J1J0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J1J0_VITVI)

HSP 1 Score: 178 bits (452), Expect = 5.040e-46
Identity = 111/365 (30.41%), Postives = 184/365 (50.41%), Query Frame = 1
Query:   19 NVLYVPEASDSILSIERMVSQGMEAYFGSERRWLHYN---GITIPFEHTSRKEYSLRVINNDK---RQQVVNTKLLHERLGHVRDLSTVARQQGIRLNG------KLGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVDK-SFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYGVCYIPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            +VLYVP+   ++LS+ +++ +G +  F  E +W       G  +       K ++L ++ +++      V N +L H RLGH   +  +  Q+   + G      KL  C AC+ GK +++P  P    R    L LVHT   GP    S  G ++ I F+DDY +    Y L+ KSE      +++  +   +   + ++RS  G EY  ++F +FC E GI+ + +  Y PQ NGV+ER  RSI +M R  +    + ++   EA ++AV+ LNR+PTR     TP+E W G  P L +LR+   +        Y+P     +  ++A   VF+ Y   S +YRI+  +N  + +SR+V+  E
Sbjct:  380 DVLYVPDIDQNLLSVGQLIEKGFKVIF--EDKWCMIKDAKGRDVFKVKMRAKSFALNLMEDEQIAFSSTVSNAELWHRRLGHFHHVGLLYMQKQNLVKGVPLLEDKLADCVACQYGKQTRRPF-PQTAWRAMHKLQLVHTDVGGPQKTPSLNGSKYYIAFIDDYTRFCWIYFLKSKSEVANVFWKYKAWVENQSSCRMQKIRSDNGKEYTNEIFDKFCEEAGIEHQLTTPYTPQQNGVSERKNRSIMEMTRCMLHEKELPKKLWAEAANTAVFLLNRLPTRVLQKKTPFEAWFGYKPDLKNLRTFGCLCFS-----YVPQVKRDKLDKKAEPGVFIGYSNSSKAYRIFQPQNGKILVSRDVKFME 736          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A151RMC4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RMC4_CAJCA)

HSP 1 Score: 176 bits (447), Expect = 2.310e-45
Identity = 109/373 (29.22%), Postives = 187/373 (50.13%), Query Frame = 1
Query:   19 NVLYVPEASDSILSIERMVSQGMEAYF-----------GSERRWLHYNGITIPFEHTSRKEYSLRVINNDKRQQVVNTKLLHERLGH--VRDLSTVARQQGIRLNGKLGVCS----ACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVDK-SFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYG-VCY--IPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            +VL VPE   ++LS+ +M+  G    F           G E   +     + P       E+  ++   +     +++KL H+R GH  ++ +    +Q+ ++    + +CS    +C+ GK  + P       R  E L LVH+   GP+   S  G ++ I+F+DD+ +M   Y L+QKSE     K+F+  +   +G  + +LR+  G EY    F  FC + G++ + + +Y PQ NGVAER  RS+ +MAR  +    + + +  EA+++AVY  NR+PTR   G TP E W G  P + HL+        V+G +CY  +P    ++   +A   + + Y   S  Y++Y  ++  V +SR+++VDE
Sbjct:  333 DVLLVPELDQNLLSVGQMMQSGYCLLFKEGSCIVTDVDGHELFEIEMRKRSFPVNWNLISEHECKISKIE-----LDSKLWHKRFGHYNLKSIQFAQKQELVKDLPNIQICSEVCESCQLGKQYRLPFPNSVTWRANEKLELVHSDVCGPMKTTSLNGNKYFILFIDDFTRMTWVYFLKQKSEVFSVFKKFKALVEAQSGFLLKKLRTDNGKEYTSTEFNIFCDDLGVEHQLTVSYSPQQNGVAERKNRSVLEMARCMIFEKKLPKSFWAEAINTAVYLQNRLPTRAIKGMTPVEAWGGIKPSVRHLK--------VFGSLCYTHVPAVKRSKLDERAERGILIGYSSKSKGYKVYGIDSGKVSVSRDIKVDE 692          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A2K3NI74_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NI74_TRIPR)

HSP 1 Score: 176 bits (446), Expect = 2.450e-45
Identity = 110/363 (30.30%), Postives = 192/363 (52.89%), Query Frame = 1
Query:   19 NVLYVPEASDSILSIERMVSQGMEAYFGSERRWLHYNGITIPFEHTSR-KEYSLRVINNDK---RQQVVNTKLLHERLGHVRDLSTVARQQGIRLNG--KLGV----CSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVDK-SFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYGVCYIPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            +VL+VPE + ++LS+ +++ +G + +F  +   +  +     F+   + K ++L  +N ++    ++V +T L H+RLGH    + +  ++   +N   KL V    C AC+ GK  + P +     R T+ L LVHT   GP+   S  G ++ I F+DDY++M   Y ++ KSE      +F+  +   +G  +  +RS  G EY  + F +FC + GI+ + +A Y PQ NGV ER  R+I +MAR  +    + + +  EA ++AV+ LNR+PT+     TP+E WHG  PKL +L++   +        YI      +  ++A   +F+ Y   + +YRIY      + +SR+V+  E
Sbjct:  388 DVLFVPEINQNLLSVPQLLEKGYKVFFEDKNCMIKDSEGREVFKIQMKGKSFALDFMNKEQAAMHKEVSSTMLWHKRLGHFHHAALIFMKKNNLVNDLPKLEVMPPECIACQYGKQKRLPFQQNNTWRATQKLQLVHTDVGGPMKTPSLNGSKYYIAFIDDYSRMCWIYFMKFKSEVAGIFMKFKAWVETQSGSKMQVIRSDNGTEYTSEKFNKFCEDAGIEHQLTAPYTPQQNGVVERKNRTIMEMARCMLHDKGLPKEFWAEAANTAVFLLNRLPTKAVQKKTPFEAWHGSKPKLINLKTFGCLCFS-----YIHQVKRDKLDKKAEPGIFVGYSLIAKAYRIYLPHQNKIIVSRDVKFME 745          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A151R0Z6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R0Z6_CAJCA)

HSP 1 Score: 176 bits (445), Expect = 2.620e-45
Identity = 113/366 (30.87%), Postives = 192/366 (52.46%), Query Frame = 1
Query:   19 NVLYVPEASDSILSIERMVSQGMEAYFGSERRWLH-YNGITIPFEHTSRKEYSLRVINNDKRQQVV---NTKLLHERLGHVRDLS--TVARQQGIR----LNGKLGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVDK-SFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYGVCY---IPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            +VLYVPE   ++LS+ +++ +G +  F ++  ++   N   I     S + ++L  +  ++        +T++ H+RLGH    +   + R++ +R    L+ +L  C AC+ GK ++ P K     R TE L L+HT  AGP    S    ++ I+F+DD+++M   Y L+ KSE       F++ I   +G  I  LRS  G EY  + F ++C E GI+ + +  Y PQ NGV+ER  R+I +M R  +    + + Y  EA ++AV+ LNR+PT+  +G TP+E W+G  P L + +        V+G  Y   +P     +  ++A   VF+ Y   S +YRI+    K + +S++V   E
Sbjct:  354 DVLYVPEIDQNLLSVGQLLEKGFKLNFENKHCFIKDVNNKEIFSIKMSGRSFTLDPMEEEQAAYPATTNSTEIWHKRLGHFHHAAMLNMQRKELVRGLPHLDSELPSCEACQYGKQTRLPFK-QETWRATERLQLIHTDLAGPQRMVSLKESKYYIIFIDDFSRMCWIYFLKSKSEVAGVFWRFKQWIEKQSGCMIQALRSDNGKEYTSEQFNKYCEEAGIEHQLTTPYNPQQNGVSERKNRTIMEMVRCMLHEKGLPKEYWAEAANTAVFLLNRLPTKAVDGKTPFEVWYGYKPFLKNFK--------VFGCLYFTYVPQIKRDKLDKKAEPGVFVGYSSVSKAYRIFQPHTKKILISKDVHFME 710          
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Match: A0A8J6D4G9_9ROSI (Integrase catalytic domain-containing protein n=3 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D4G9_9ROSI)

HSP 1 Score: 174 bits (441), Expect = 7.460e-45
Identity = 115/366 (31.42%), Postives = 180/366 (49.18%), Query Frame = 1
Query:   19 NVLYVPEASDSILSIERMVSQGMEAYF-GSERRWLHYNG---ITIPFEHTSRKEYSLRVINNDKRQQVVNTKLLHERLGHV------RDLSTVARQQGIRLNGKLGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVD-KSFGGYRFAIVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGGEYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITANMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRLVRVRVYG-VCY--IPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQLSRNVRVDE 1074
            NVL+VPE   ++LSI +++ +G    F G E +     G   +T+P    S      + + +     +  +KL H+RLGH       R +S    +  I+      VC  C+ GK ++ P       R +E L LVHT   GP+  +S  G R+ I+F+DD  +    Y L+ K+E ++A  +F+       G  +  +RS  G EY    F+  C+  GIK + +  Y PQ NGV+ER  RS+  MAR  +   N+ +    EAV++AVY  NR+PT+     TP+E W G  P L HLR        ++G +CY  +P    ++  ++A A + + Y  +   YRI +     V  SR+V  +E
Sbjct:  387 NVLFVPEIDRNLLSIAQLLEKGYTVVFKGKECQISDQKGSILMTVPMSDKSFVVDWNKDLESAYAASIEESKLWHQRLGHANYRSMARMISKDMTENFIKSVQNEDVCEVCQLGKQARLPFPTNTAWRASEKLQLVHTDVCGPMKTESLNGSRYFILFIDDSTRYCWIYFLKSKTEVVQAFLKFKTAAETETGCKLRSIRSDNGTEYISAQFQDICARAGIKHQLTNVYTPQQNGVSERKNRSLLDMARCMIFEKNLPKNLWAEAVNTAVYVQNRLPTKALEQKTPFEAWFGFKPSLAHLR--------IFGCLCYSQVPAVKRSKLDKKAQAGILVGYSSEKKGYRILDPSTNKVFASRDVVFNE 744          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19037.4770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2IM54_9BRAS8.310e-4938.18Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A6S7JQN7_PARCT3.630e-4731.55Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI0016589FE94.430e-4732.69uncharacterized protein LOC118514016 isoform X1 n=... [more]
A0A1J3I5V1_NOCCA4.740e-4730.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9F0C3_PARCT3.700e-4630.93Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A438J1J0_VITVI5.040e-4630.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RMC4_CAJCA2.310e-4529.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3NI74_TRIPR2.450e-4530.30Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A151R0Z6_CAJCA2.620e-4530.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6D4G9_9ROSI7.460e-4531.42Integrase catalytic domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19037contigH-paniculata_contig19037:1308..2453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score195.7
Seed ortholog evalue3.8e-47
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size1074
Cds size1074
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929459.156643-CDS-H-paniculata_contig19037:1307..21951622929459.156643-CDS-H-paniculata_contig19037:1307..2195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19037 1308..2195 -
1691480870.6295397-CDS-H-paniculata_contig19037:1307..21951691480870.6295397-CDS-H-paniculata_contig19037:1307..2195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19037 1308..2195 -
1622929459.1762156-CDS-H-paniculata_contig19037:2267..24531622929459.1762156-CDS-H-paniculata_contig19037:2267..2453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19037 2268..2453 -
1691480870.642793-CDS-H-paniculata_contig19037:2267..24531691480870.642793-CDS-H-paniculata_contig19037:2267..2453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19037 2268..2453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19037.4770.1prot_H-paniculata_contig19037.4770.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19037 1308..2453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19037.4770.1

>prot_H-paniculata_contig19037.4770.1 ID=prot_H-paniculata_contig19037.4770.1|Name=mRNA_H-paniculata_contig19037.4770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp
MRIIFCNVLYVPEASDSILSIERMVSQGMEAYFGSERRWLHYNGITIPFE
HTSRKEYSLRVINNDKRQQVVNTKLLHERLGHVRDLSTVARQQGIRLNGK
LGVCSACEKGKASKQPVKPYREERTTEPLALVHTGRAGPVDKSFGGYRFA
IVFVDDYNKMRKFYILRQKSEALRALKEFERDIVGANGLCINRLRSGQGG
EYAGKLFRQFCSENGIKQEFSAAYPPQLNGVAERSWRSIFKMARANMITA
NMGRRYRVEAVHSAVYYLNRVPTRPHNGGTPYEKWHGETPKLDHLRSSRL
VRVRVYGVCYIPVAAGTQARRQAWAAVFLWYDEDSPSYRIYNSENKSVQL
SRNVRVDE
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mRNA from alignment at H-paniculata_contig19037:1308..2453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19037.4770.1 ID=mRNA_H-paniculata_contig19037.4770.1|Name=mRNA_H-paniculata_contig19037.4770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig19037:1308..2453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCATCATCTTCTGCAATGTATTATATGTACCTGAAGCATCAGACAG TATTTTATCGATTGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTG GTTCGGAACGGAGATGGTTGCATTACAATGGGATAACGATCCCGTTCGAA CACACATCGCGGAAGGAGTATTCATTACGTGTGATAGTGGCAAAACGGGC CATCCGAAAATAAGCGAAAGTTCTTGGATTACTCAGCAACGACTGCATCA CCCCGAAGAACAATGATAAGAGGCAACAGGTGGTGAACACCAAGTTACTA CACGAGCGACTTGGGCATGTTCGAGACCTTTCCACAGTCGCGCGGCAACA AGGGATAAGGTTAAACGGGAAGCTCGGTGTCTGCTCGGCATGTGAGAAGG GGAAAGCGTCGAAGCAGCCTGTAAAACCGTATCGAGAAGAGCGGACGACC GAGCCGTTGGCGCTGGTGCACACCGGCAGAGCCGGACCGGTGGACAAATC CTTCGGAGGATATCGCTTCGCCATCGTCTTCGTCGATGACTACAACAAAA TGCGTAAATTCTATATCTTGCGACAAAAATCGGAGGCGCTACGGGCCCTG AAGGAATTCGAGAGGGACATAGTGGGGGCAAACGGTTTGTGCATTAATCG CCTTCGGTCGGGTCAGGGAGGAGAATATGCTGGAAAGCTTTTTAGACAAT TCTGCTCGGAAAATGGCATCAAGCAGGAGTTCTCTGCCGCCTACCCACCG CAACTAAACGGCGTGGCGGAGCGCAGCTGGCGCAGCATTTTCAAGATGGC AAGAGCCAACATGATCACCGCCAACATGGGTCGTCGATATAGGGTGGAAG CGGTGCACTCTGCAGTGTACTACCTAAATCGCGTCCCGACGCGACCGCAC AATGGAGGAACGCCGTACGAAAAATGGCACGGCGAGACGCCAAAGTTGGA CCATCTTCGCAGCAGTCGACTGGTTAGGGTTAGGGTGTACGGCGTATGTT ATATTCCAGTCGCAGCTGGGACGCAAGCTCGACGACAAGCATGGGCGGCG GTGTTTCTGTGGTACGACGAGGACAGCCCGAGTTATCGCATATATAACTC GGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAGAGTTGACGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig19037:1308..2453-

>mRNA_H-paniculata_contig19037.4770.1 ID=mRNA_H-paniculata_contig19037.4770.1|Name=mRNA_H-paniculata_contig19037.4770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig19037:1308..2453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCATCATCTTCTGCAATGTATTATATGTACCTGAAGCATCAGACAG
TATTTTATCGATTGAGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTG
GTTCGGAACGGAGATGGTTGCATTACAATGGGATAACGATCCCGTTCGAA
CACACATCGCGGAAGGAGTATTCATTACGTGTGATAATGCGCATCATCTT
CTGCAATGTATTATATGTACCTGAAGCATCAGACAGTATTTTATCGATTG
AGCGGATGGTGAGCCAAGGGATGGAGGCGTATTTTGGTTCGGAACGGAGA
TGGTTGCATTACAATGGGATAACGATCCCGTTCGAACACACATCGCGGAA
GGAGTATTCATTACGTGTGATAAACAATGATAAGAGGCAACAGGTGGTGA
ACACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGACCTTTCCACA
GTCGCGCGGCAACAAGGGATAAGGTTAAACGGGAAGCTCGGTGTCTGCTC
GGCATGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGTAAAACCGTATCGAG
AAGAGCGGACGACCGAGCCGTTGGCGCTGGTGCACACCGGCAGAGCCGGA
CCGGTGGACAAATCCTTCGGAGGATATCGCTTCGCCATCGTCTTCGTCGA
TGACTACAACAAAATGCGTAAATTCTATATCTTGCGACAAAAATCGGAGG
CGCTACGGGCCCTGAAGGAATTCGAGAGGGACATAGTGGGGGCAAACGGT
TTGTGCATTAATCGCCTTCGGTCGGGTCAGGGAGGAGAATATGCTGGAAA
GCTTTTTAGACAATTCTGCTCGGAAAATGGCATCAAGCAGGAGTTCTCTG
CCGCCTACCCACCGCAACTAAACGGCGTGGCGGAGCGCAGCTGGCGCAGC
ATTTTCAAGATGGCAAGAGCCAACATGATCACCGCCAACATGGGTCGTCG
ATATAGGGTGGAAGCGGTGCACTCTGCAGTGTACTACCTAAATCGCGTCC
CGACGCGACCGCACAATGGAGGAACGCCGTACGAAAAATGGCACGGCGAG
ACGCCAAAGTTGGACCATCTTCGCAGCAGTCGACTGGTTAGGGTTAGGGT
GTACGGCGTATGTTATATTCCAGTCGCAGCTGGGACGCAAGCTCGACGAC
AAGCATGGGCGGCGGTGTTTCTGTGGTACGACGAGGACAGCCCGAGTTAT
CGCATATATAACTCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAG
AGTTGACGAAAACAATGATAAGAGGCAACAGGTGGTGAACACCAAGTTAC
TACACGAGCGACTTGGGCATGTTCGAGACCTTTCCACAGTCGCGCGGCAA
CAAGGGATAAGGTTAAACGGGAAGCTCGGTGTCTGCTCGGCATGTGAGAA
GGGGAAAGCGTCGAAGCAGCCTGTAAAACCGTATCGAGAAGAGCGGACGA
CCGAGCCGTTGGCGCTGGTGCACACCGGCAGAGCCGGACCGGTGGACAAA
TCCTTCGGAGGATATCGCTTCGCCATCGTCTTCGTCGATGACTACAACAA
AATGCGTAAATTCTATATCTTGCGACAAAAATCGGAGGCGCTACGGGCCC
TGAAGGAATTCGAGAGGGACATAGTGGGGGCAAACGGTTTGTGCATTAAT
CGCCTTCGGTCGGGTCAGGGAGGAGAATATGCTGGAAAGCTTTTTAGACA
ATTCTGCTCGGAAAATGGCATCAAGCAGGAGTTCTCTGCCGCCTACCCAC
CGCAACTAAACGGCGTGGCGGAGCGCAGCTGGCGCAGCATTTTCAAGATG
GCAAGAGCCAACATGATCACCGCCAACATGGGTCGTCGATATAGGGTGGA
AGCGGTGCACTCTGCAGTGTACTACCTAAATCGCGTCCCGACGCGACCGC
ACAATGGAGGAACGCCGTACGAAAAATGGCACGGCGAGACGCCAAAGTTG
GACCATCTTCGCAGCAGTCGACTGGTTAGGGTTAGGGTGTACGGCGTATG
TTATATTCCAGTCGCAGCTGGGACGCAAGCTCGACGACAAGCATGGGCGG
CGGTGTTTCTGTGGTACGACGAGGACAGCCCGAGTTATCGCATATATAAC
TCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACGTGAGAGTTGACGAA
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