prot_H-paniculata_contig1902.4767.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1902.4767.1
Unique Nameprot_H-paniculata_contig1902.4767.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length270
Homology
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BLAST of mRNA_H-paniculata_contig1902.4767.1 vs. uniprot
Match: D8LC76_ECTSI (Possible CAMK/ Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC76_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.530e-20
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 0 
Query:    1 MNGQGWQRRGGWGSYLIRKSQVELDDGRVYGVKSKGGKVELLVLASNGVCGHIPAIIARLDSL 63
            MNG GW RRGGW SYL+R+S+ ELD+GRVYGV+SK G VE L+L+SN VCG IP IIARL+SL
Sbjct:  451 MNGTGWPRRGGWDSYLVRRSRAELDEGRVYGVRSKEGSVEYLILSSNNVCGRIPPIIARLESL 513
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1902.4767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC76_ECTSI6.530e-2071.43Possible CAMK/ Leucine rich repeat protein n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 228..252
e-value: 26.0
score: 9.9
coord: 60..83
e-value: 410.0
score: 0.0
coord: 108..132
e-value: 74.0
score: 6.1
coord: 156..180
e-value: 17.0
score: 11.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 31..270
e-value: 9.4E-67
score: 227.6
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 134..156
e-value: 1.4
score: 9.7
coord: 183..204
e-value: 0.065
score: 13.8
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 90..264
NoneNo IPR availablePANTHERPTHR45974:SF109coord: 90..264
NoneNo IPR availablePANTHERPTHR45974:SF109coord: 32..232
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 32..232
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 37..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1902contigH-paniculata_contig1902:8036..9276 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1902.4767.1mRNA_H-paniculata_contig1902.4767.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1902 8015..9276 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1902.4767.1 ID=prot_H-paniculata_contig1902.4767.1|Name=mRNA_H-paniculata_contig1902.4767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
MNGQGWQRRGGWGSYLIRKSQVELDDGRVYGVKSKGGKVELLVLASNGVC
GHIPAIIARLDSLKCINFSDNHISGIIPSELGLLLQLQVLQLQGNNLRDE
ISPLLGSLKSLVRLSLGNNKLMGPLPDSLGNLIHLQFLSVEHNRLTGPIP
DSICQLSALETLNASNNRLDGHIPAGIGKLRVLKKLDLGHNIIAGEIPRS
ISKLKYMVWLRLNNNLLSGPVPERLADLANLLILNLSSNKLSGSVPSAVG
KLADLITVTLRDNSFQRPFP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt