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Homology
BLAST of mRNA_H-paniculata_contig1902.4767.1 vs. uniprot
Match: D8LC76_ECTSI (Possible CAMK/ Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC76_ECTSI) HSP 1 Score: 109 bits (272), Expect = 3.930e-23 Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 1 LAAIHKRMNGQGWQRRGGWGSYLIRKSQVELDDGRVYGVKSKGGKVELLVLASNGVCGHIPAIIARLDSL 210
LAA+H+RMNG GW RRGGW SYL+R+S+ ELD+GRVYGV+SK G VE L+L+SN VCG IP IIARL+SL
Sbjct: 444 LAALHRRMNGTGWPRRGGWDSYLVRRSRAELDEGRVYGVRSKEGSVEYLILSSNNVCGRIPPIIARLESL 513
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 99.4 |
| Seed ortholog evalue | 2.8e-18 |
| Seed eggNOG ortholog | 2880.D8LC76 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | protein serine/threonine kinase activity |
| EggNOG OGs | 2QPYS@2759,COG4886@1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 831 |
| Cds size | 810 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1902.4767.1 >prot_H-paniculata_contig1902.4767.1 ID=prot_H-paniculata_contig1902.4767.1|Name=mRNA_H-paniculata_contig1902.4767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=270bp
MNGQGWQRRGGWGSYLIRKSQVELDDGRVYGVKSKGGKVELLVLASNGVC
GHIPAIIARLDSLKCINFSDNHISGIIPSELGLLLQLQVLQLQGNNLRDE
ISPLLGSLKSLVRLSLGNNKLMGPLPDSLGNLIHLQFLSVEHNRLTGPIP
DSICQLSALETLNASNNRLDGHIPAGIGKLRVLKKLDLGHNIIAGEIPRS
ISKLKYMVWLRLNNNLLSGPVPERLADLANLLILNLSSNKLSGSVPSAVG
KLADLITVTLRDNSFQRPFP back to topmRNA from alignment at H-paniculata_contig1902:8015..9276+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1902.4767.1 ID=mRNA_H-paniculata_contig1902.4767.1|Name=mRNA_H-paniculata_contig1902.4767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1262bp|location=Sequence derived from alignment at H-paniculata_contig1902:8015..9276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGCCGCTATACATAAGCGAATGAATGGGCAGGGGTGGCAAAGGCGGGG
TGGATGGGGGTCGTATCTCATCCGAAAATCCCAGGTGGAACTTGACGACG
GACGGGTGTATGGAGTGAAATCTAAGGGTGGAAAAGTGGAGCTGTTAGTG
TTGGCGTCCAACGGTGTTTGCGGGCATATCCCTGCGATCATAGCCAGACT
TGATTCTCTCAAGTGCATCAACTTTTCCGACAATCACATATCGGGGATCA
TTCCTTCGGAGCTCGGGCTACTACTACAGCTTCAGGTACTTCAATTGCAG
GGGAACAATCTTCGGGGTGAGTTAATTTTTATGAACCGGATCGAGCTCAA
TTTTTCTGTGGGAGTGGTAGTTTCCTCCCAATAGATCGAACCTATTTCCA
ATGCCGATCACATCGTTCATTATTTGTGTTCCGTCTTGTGGCGATGCCTT
GAGAACTTGAAAAGCGACGAGGTCGGGGAAAATGGGTGCCGTTCGTAGGA
TGACGACTATTTACTGCAAACACTTTACCAGCAAACTTACAGCATTTTAC
CGTCGCCGTACTTCTTTCTTCTGACTGTACGGCCCGCCGAGGAAACAAAT
ACCGTGCAATGACCAACAAATTCAACCAACAAATTCAACCAACAAAATGG
CTACATGGCAACAGAGAAATCTGCATTAACAGTCGTCTCTTTCCTTTTTC
ATCATGCTCCGCCCTGAATTGACTCGTGACAAACGTTGACGCTGCAGACG
AGATATCTCCACTATTGGGGTCGCTCAAGAGCCTGGTACGACTCTCGTTG
GGCAACAATAAGCTCATGGGTCCACTCCCAGACAGTTTGGGAAACCTGAT
CCACCTCCAGTTTCTGTCGGTCGAACACAACCGCTTAACGGGACCCATTC
CGGATTCCATTTGCCAACTGTCGGCCCTGGAAACGCTCAACGCATCCAAC
AACAGGCTGGACGGGCACATACCGGCGGGCATCGGCAAGCTGCGCGTGCT
GAAAAAGCTTGACCTGGGACACAACATTATCGCGGGAGAGATACCCCGAT
CGATATCCAAACTCAAGTATATGGTCTGGCTCCGACTGAATAACAATCTG
CTCAGCGGCCCCGTGCCGGAACGGCTAGCCGACCTCGCTAATCTTCTCAT
TCTCAATCTAAGCTCCAACAAGCTGTCGGGCAGCGTGCCGTCGGCTGTGG
GCAAGCTAGCCGATCTAATCACCGTAACTCTACGAGACAATTCGTTTCAG
CGCCCGTTTCCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1902:8015..9276+ >mRNA_H-paniculata_contig1902.4767.1 ID=mRNA_H-paniculata_contig1902.4767.1|Name=mRNA_H-paniculata_contig1902.4767.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at H-paniculata_contig1902:8015..9276+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGGGCAGGGGTGGCAAAGGCGGGGTGGATGGGGGTCGTATCTCAT
CCGAAAATCCCAGGTGGAACTTGACGACGGACGGGTGTATGGAGTGAAAT
CTAAGGGTGGAAAAGTGGAGCTGTTAGTGTTGGCGTCCAACGGTGTTTGC
GGGCATATCCCTGCGATCATAGCCAGACTTGATTCTCTCAAGTGCATCAA
CTTTTCCGACAATCACATATCGGGGATCATTCCTTCGGAGCTCGGGCTAC
TACTACAGCTTCAGGTACTTCAATTGCAGGGGAACAATCTTCGGGATGAA
TGGGCAGGGGTGGCAAAGGCGGGGTGGATGGGGGTCGTATCTCATCCGAA
AATCCCAGGTGGAACTTGACGACGGACGGGTGTATGGAGTGAAATCTAAG
GGTGGAAAAGTGGAGCTGTTAGTGTTGGCGTCCAACGGTGTTTGCGGGCA
TATCCCTGCGATCATAGCCAGACTTGATTCTCTCAAGTGCATCAACTTTT
CCGACAATCACATATCGGGGATCATTCCTTCGGAGCTCGGGCTACTACTA
CAGCTTCAGGTACTTCAATTGCAGGGGAACAATCTTCGGGACGAGATATC
TCCACTATTGGGGTCGCTCAAGAGCCTGGTACGACTCTCGTTGGGCAACA
ATAAGCTCATGGGTCCACTCCCAGACAGTTTGGGAAACCTGATCCACCTC
CAGTTTCTGTCGGTCGAACACAACCGCTTAACGGGACCCATTCCGGATTC
CATTTGCCAACTGTCGGCCCTGGAAACGCTCAACGCATCCAACAACAGGC
TGGACGGGCACATACCGGCGGGCATCGGCAAGCTGCGCGTGCTGAAAAAG
CTTGACCTGGGACACAACATTATCGCGGGAGAGATACCCCGATCGATATC
CAAACTCAAGTATATGGTCTGGCTCCGACTGAATAACAATCTGCTCAGCG
GCCCCGTGCCGGAACGGCTAGCCGACCTCGCTAATCTTCTCATTCTCAAT
CTAAGCTCCAACAAGCTGTCGGGCAGCGTGCCGTCGGCTGTGGGCAAGCT
AGCCGATCTAATCACCGTAACTCTACGAGACAATTCGTTTCAGCGCCCGT
TTCCGACGAGATATCTCCACTATTGGGGTCGCTCAAGAGCCTGGTACGAC
TCTCGTTGGGCAACAATAAGCTCATGGGTCCACTCCCAGACAGTTTGGGA
AACCTGATCCACCTCCAGTTTCTGTCGGTCGAACACAACCGCTTAACGGG
ACCCATTCCGGATTCCATTTGCCAACTGTCGGCCCTGGAAACGCTCAACG
CATCCAACAACAGGCTGGACGGGCACATACCGGCGGGCATCGGCAAGCTG
CGCGTGCTGAAAAAGCTTGACCTGGGACACAACATTATCGCGGGAGAGAT
ACCCCGATCGATATCCAAACTCAAGTATATGGTCTGGCTCCGACTGAATA
ACAATCTGCTCAGCGGCCCCGTGCCGGAACGGCTAGCCGACCTCGCTAAT
CTTCTCATTCTCAATCTAAGCTCCAACAAGCTGTCGGGCAGCGTGCCGTC
GGCTGTGGGCAAGCTAGCCGATCTAATCACCGTAACTCTACGAGACAATT
CGTTTCAGCGCCCGTTTCCG back to top
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