mRNA_H-paniculata_contig19014.4765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19014.4765.1
Unique NamemRNA_H-paniculata_contig19014.4765.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 1.700e-84
Identity = 130/154 (84.42%), Postives = 144/154 (93.51%), Query Frame = 1 
Query:    1 VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDGGKDFFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            VDDVEVNPILIQKG TK+ALYGMGSMRDERLNRMWQQKKV+FLRPLEDDGGKDFFN+F+LHQNRDLGRGKK+CIHESMIPEW+DLVIWGHEHECQ    ++P+ESLVGTFRI+QPGSSVATSLCEGE+V K+VG+LE+R NDFRL   PLSQVR
Sbjct:  119 VDDVEVNPILIQKGLTKVALYGMGSMRDERLNRMWQQKKVRFLRPLEDDGGKDFFNVFVLHQNRDLGRGKKNCIHESMIPEWIDLVIWGHEHECQ----VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQVR 268
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: B8C3H0_THAPS (Mre11_DNA_bind domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3H0_THAPS)

HSP 1 Score: 227 bits (578), Expect = 7.290e-70
Identity = 112/154 (72.73%), Postives = 126/154 (81.82%), Query Frame = 1 
Query:    1 VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDGGKDFFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            VD+V+V+P+L+QKG TK+ALYGMGSMRDERLNRMWQ KKVKFLRP EDD    +FNIF LHQNRDLGRG K+C+HESMIPEWMDLV+WGHEHEC     I P ESLVGTFRI+QPGSSVATSL +GE   KHVGIL++R   FRL   PL  VR
Sbjct:  154 VDNVQVSPVLLQKGGTKVALYGMGSMRDERLNRMWQGKKVKFLRPEEDDNR--WFNIFTLHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHEC----LITPQESLVGTFRISQPGSSVATSLTQGEGRQKHVGILDIRGQQFRLKSIPLGSVR 301
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 229 bits (585), Expect = 5.770e-69
Identity = 116/159 (72.96%), Postives = 131/159 (82.39%), Query Frame = 1 
Query:    1 VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRP---LEDDGGKD--FFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            VD VEV+PILI+KG T++ALYGMGSMRDERLNRMWQ KKV+FLRP    EDD  ++  FFNIF LHQNRDLGRG K+C+HESMIPEWMDLV+WGHEHEC     I+ +ES VGT+RI QPGSSVATSL  GESV KHVGIL+VR N FR+ K PLSQVR
Sbjct:  226 VDKVEVSPILIRKGSTRVALYGMGSMRDERLNRMWQGKKVRFLRPEVDAEDDDEEENAFFNIFALHQNRDLGRGSKNCVHESMIPEWMDLVVWGHEHEC----LIEAMESAVGTYRITQPGSSVATSLSAGESVRKHVGILDVRGNQFRIKKLPLSQVR 380
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: B7G2N6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2N6_PHATC)

HSP 1 Score: 218 bits (556), Expect = 8.230e-66
Identity = 107/158 (67.72%), Postives = 127/158 (80.38%), Query Frame = 1 
Query:    1 VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDGGKD----FFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            VD VE++P+LIQKG T+LALYGMGSMRDERLNRMWQ KKV+FLRP EDD   +    FFN+F LHQNRDLGRG K+C+ ESMIPEWMDLV+WGHEHEC     I+  ES+VGTFRI QPGSSVATSL  GE+V K VG+++V+  +FR+   PL+QVR
Sbjct:  180 VDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHEC----LIEFSESVVGTFRITQPGSSVATSLVAGEAVRKKVGVVDVQGKNFRMHTVPLTQVR 333
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: B7G2N5_PHATC (Double-strand break repair protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2N5_PHATC)

HSP 1 Score: 218 bits (556), Expect = 5.380e-64
Identity = 107/158 (67.72%), Postives = 127/158 (80.38%), Query Frame = 1 
Query:    1 VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDGGKD----FFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            VD VE++P+LIQKG T+LALYGMGSMRDERLNRMWQ KKV+FLRP EDD   +    FFN+F LHQNRDLGRG K+C+ ESMIPEWMDLV+WGHEHEC     I+  ES+VGTFRI QPGSSVATSL  GE+V K VG+++V+  +FR+   PL+QVR
Sbjct:  180 VDQVEISPVLIQKGATQLALYGMGSMRDERLNRMWQGKKVRFLRPAEDDEDNEHDTGFFNLFTLHQNRDLGRGSKNCVQESMIPEWMDLVVWGHEHEC----LIEFSESVVGTFRITQPGSSVATSLVAGEAVRKKVGVVDVQGKNFRMHTVPLTQVR 333
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: A0A7S1Z5E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z5E1_9STRA)

HSP 1 Score: 212 bits (540), Expect = 7.360e-64
Identity = 109/169 (64.50%), Postives = 128/169 (75.74%), Query Frame = 1 
Query:    1 VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPL-------------EDDGGKD--FFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            VD VEV+PIL++KG T +ALYGMGSMRDERLNRMWQ KKV+FLRP              E + G++  +FNIF LHQNRD GRG K+C+HESMIPEWMDLV+WGHEHEC+    I P ESLVGTFRI QPGSSVATSL +GE+V KH+G+L++R   FRL   PLS VR
Sbjct:   91 VDKVEVSPILLRKGSTNVALYGMGSMRDERLNRMWQGKKVRFLRPENVNSPLDGTNDEDEANNGQENTWFNIFALHQNRDTGRGAKNCVHESMIPEWMDLVVWGHEHECR----IVPDESLVGTFRITQPGSSVATSLVQGEAVRKHIGLLDIRGCQFRLKPIPLSMVR 255
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: W7UA87_9STRA (Meiotic recombination 11 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA87_9STRA)

HSP 1 Score: 208 bits (530), Expect = 7.030e-63
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1 
Query:    4 DDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLR--PLEDDGGKDFFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            D VEV P+L+QKGRT +ALYG+G+MRDERLNRMWQ+KK+KFLR  P E     DFF++F LHQNRD GRG+K+C+ ESMIPEWMDLV+WGHEHEC     + P  SL G F I+QPGSSVATSL EGE+  K VG+L+VR  +FRL   PL QVR
Sbjct:  168 DAVEVAPLLLQKGRTCMALYGLGNMRDERLNRMWQKKKIKFLRHAPRERGAAPDFFSLFALHQNRDTGRGQKNCVQESMIPEWMDLVVWGHEHEC----LVRPTRSLAGGFYISQPGSSVATSLVEGEATPKQVGVLDVREGNFRLFPVPLRQVR 318
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 8.260e-60
Identity = 107/168 (63.69%), Postives = 124/168 (73.81%), Query Frame = 1 
Query:    1 VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDGGKD--------------FFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            VD VEV P+LI+KG TK+A+YGMGSMRDERLNRMWQ KKV+FL P+   G                 +FNIF LHQNRDLGRG K+C+HESMIPE+MDLV+WGHEHEC+    I+P ES VGTFRI+QPGSSVATSL  GE+  K VGIL++R   FRL   PLSQVR
Sbjct:  183 VDKVEVAPVLIKKGSTKVAIYGMGSMRDERLNRMWQGKKVRFLEPVVAAGXXXXXXXXXXXXGVNGGWFNIFALHQNRDLGRGSKNCVHESMIPEYMDLVVWGHEHECK----IEPDESAVGTFRISQPGSSVATSLTAGEAEKKQVGILDIRGQSFRLRPVPLSQVR 346
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: A0A7S3ZYR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYR3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.150e-59
Identity = 97/153 (63.40%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:    4 DDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDGGKDFFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            D VEV+P+L++KG T++ALYG+G+MRDERLNRMWQQK+V+FLRP +      +F+IF+LHQNRD+GRG+ +C+HESMIP W+DLVIWGHEHECQ    I P ES VGTFR+ QPGSSVA SL EGE+  KH G+L+VR  +FRL    L+ VR
Sbjct:  224 DRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT----YFSIFVLHQNRDVGRGRNTCVHESMIPAWIDLVIWGHEHECQ----IKPRESAVGTFRVCQPGSSVACSLVEGEAKPKHCGLLQVRGAEFRLTPLRLTCVR 368
[Close]
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Match: A0A8J2X2L8_9STRA (Double-strand break repair protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2L8_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.770e-59
Identity = 97/153 (63.40%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:    4 DDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDGGKDFFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAIDPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPLSQVR 462
            D VEV+P+L++KG T++ALYG+G+MRDERLNRMWQQK+V+FLRP +      +F+IF+LHQNRD+GRG+ +C+HESMIP W+DLVIWGHEHECQ    I P ES VGTFR+ QPGSSVA SL EGE+  KH G+L+VR  +FRL    L+ VR
Sbjct:  157 DRVEVSPVLLRKGNTRVALYGLGNMRDERLNRMWQQKRVRFLRPRDGT----YFSIFVLHQNRDVGRGRNTCVHESMIPAWIDLVIWGHEHECQ----IKPRESAVGTFRVCQPGSSVACSLVEGEAKPKHCGLLQVRGAEFRLTPLRLTCVR 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19014.4765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH84_9PHAE1.700e-8484.42Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
B8C3H0_THAPS7.290e-7072.73Mre11_DNA_bind domain-containing protein (Fragment... [more]
A0A7S2UFV9_9STRA5.770e-6972.96Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B7G2N6_PHATC8.230e-6667.72Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
B7G2N5_PHATC5.380e-6467.72Double-strand break repair protein n=2 Tax=Phaeoda... [more]
A0A7S1Z5E1_9STRA7.360e-6464.50Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
W7UA87_9STRA7.030e-6365.16Meiotic recombination 11 n=1 Tax=Nannochloropsis g... [more]
A0A7S4MXX5_9STRA8.260e-6063.69Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3ZYR3_9STRA1.150e-5963.40Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2X2L8_9STRA2.770e-5963.40Double-strand break repair protein n=1 Tax=Pelagom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19014contigH-paniculata_contig19014:300..4260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.1
Seed ortholog evalue2.6e-69
Seed eggNOG ortholog2880.D7FN26
Preferred nameMRE11
KEGG koko:K10865
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0420@1,KOG2310@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Exons4
Model size468
Cds size468
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19014.4765.1prot_H-paniculata_contig19014.4765.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19014 300..4260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929458.6051025-CDS-H-paniculata_contig19014:299..4701622929458.6051025-CDS-H-paniculata_contig19014:299..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 300..470 -
1691480870.3976853-CDS-H-paniculata_contig19014:299..4701691480870.3976853-CDS-H-paniculata_contig19014:299..470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 300..470 -
1622929458.6241891-CDS-H-paniculata_contig19014:1775..18861622929458.6241891-CDS-H-paniculata_contig19014:1775..1886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 1776..1886 -
1691480870.4162385-CDS-H-paniculata_contig19014:1775..18861691480870.4162385-CDS-H-paniculata_contig19014:1775..1886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 1776..1886 -
1622929458.6370816-CDS-H-paniculata_contig19014:3550..36191622929458.6370816-CDS-H-paniculata_contig19014:3550..3619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 3551..3619 -
1691480870.424531-CDS-H-paniculata_contig19014:3550..36191691480870.424531-CDS-H-paniculata_contig19014:3550..3619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 3551..3619 -
1622929458.6522253-CDS-H-paniculata_contig19014:4143..42601622929458.6522253-CDS-H-paniculata_contig19014:4143..4260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 4144..4260 -
1691480870.4353619-CDS-H-paniculata_contig19014:4143..42601691480870.4353619-CDS-H-paniculata_contig19014:4143..4260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19014 4144..4260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19014.4765.1

>prot_H-paniculata_contig19014.4765.1 ID=prot_H-paniculata_contig19014.4765.1|Name=mRNA_H-paniculata_contig19014.4765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
VDDVEVNPILIQKGRTKLALYGMGSMRDERLNRMWQQKKVKFLRPLEDDG
GKDFFNIFILHQNRDLGRGKKSCIHESMIPEWMDLVIWGHEHECQASQAI
DPIESLVGTFRIAQPGSSVATSLCEGESVAKHVGILEVRRNDFRLIKQPL
SQVRV*
back to top

mRNA from alignment at H-paniculata_contig19014:300..4260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19014.4765.1 ID=mRNA_H-paniculata_contig19014.4765.1|Name=mRNA_H-paniculata_contig19014.4765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3961bp|location=Sequence derived from alignment at H-paniculata_contig19014:300..4260- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATGACGTCGAAGTGAACCCCATCTTGATCCAAAAAGGAAGGACGAA
GCTCGCGCTGTACGGCATGGGGAGCATGAGGGACGAGCGTCTCAACCGCA
TGTGGCAGCAGAAAAAGGTAAGGGATAGCTATAACATCGCTATGGAAAAA
TGTTCATTTAACTGGTTGTGTTCTTTAGGAGGCGTTTCTAATTTGAACGA
GCGAATCTAATTTTGCCATTTCCGATTTTTGTCTAAACATTTGCGTATCG
CAACATAGCAAAAAAATACAAAAAAAATCTTTCGGAGATGAGAGGAATTT
CACACCTTCTATATCTACTCTTCTTCTGAAGGGATTTGGTACTACAGGAG
CCATCGCATATTAGTATAGCAATATACCAAGGGGAACAAAAGAAACTGAC
ATGAGCGTGTATGTATTATGTCCCAAATGCGGCACGTCGTGTATCGGTTG
GGGGTCTCTGTAAAATCTTGAAAAACGAACAACATCACGACAAAGCATGT
ATTTCATTCATTCGTGCAGCCATTCATTCCTTCATGGTTGCAGGTGATGA
TTTTTTTATTTTATAGCTTAGATGCGCCAAAAAAAAAAAAAAAAAATGTG
TGGTCGTGTGCAATGGTGAAAAAAAAAAAAAATGGCCCCAGGTGAAGTTC
CTCCGACCTCTGGAAGATGACGGTGGAAAGGATTTCTTCAATATCTTCAT
CCTGCACCAGGTGTGTGTGGAACGAGTAACGCAGTAAATGAACACCGTCG
GTATACGGCTTTTTGATCCTTGTATTCTGCGCGGCTTGTGCAGTTTCTCG
CAACACATTTCACATGATAATTTTTTTTTCCCAGATAGTATGGAAAAAAA
CCCTTAAGAACTCCGATTGAAAAACGCACTTTAATTTCCTGTGTTCAGTC
AAGAAGATTGATAACCATAACTATTGGTGTTTTCCGTAATGTCCCACGAA
CCCGTCGCGAACGCTTACTTTGGGGGAGACCAATGGTTGGTCTTTTTTTT
TCACCCGCTGTCCATTTACAATAATGGGATTTGAGTGAAACCCCCGTCTC
CATTCCCCCAGTCAGTTCGCCAGCGATTGAATAAAAAAAAGTAGGCCCCG
CTGCGAGACTTGGGGGTTATAGTTACGCCTTTCGAACGTGCAACATTTGG
TGAACCGGGATCCCCCCGAAGACTCCATATGAGGCAGAATTCGGTTGGTG
TAGCAGCGCAAGGATGATGACTAATGGCTAGTATTACCCTTTTGTAGCAC
AGCCTGGCCGACGAAAACTCGGCGTGCTCCGTTCGGGCGTTATGGGGATT
CGAGGTCGATGATCGAAATACTGAGGCATGCTGTTGTATTAGCACCATTT
CACTTCTACCCCATCCCGTCAGTCTTCCGCCGATTGAATGTAAAACACTA
GTTGAGTGGCACTGGCGACACGCACGCGTAGATAACGAACGAGCTTGTTT
ATCTGCGTGGCTCAGAATGATTAGCCTTGTTGCGCATCTCAAGGTGTTAA
TCCCTACAGTCACTGCTTGCATGCAACGTGGTCATGATCCAGTCAGGGTT
CATATCATTTTTTTTTTTTTTTTTACTTGGTCAATTGTGTAGACATGCGA
TCGATTGCTCGGGTTTGCAGTGGACATAAAGAATCCATCCGACGTGAGTC
TCGTGTTTGTTCCTGAGGGTTTTGGTTTTTAGGGATAACTGTCGAGAGCA
CGAACCTGACGTTCCTGAATCCTGACCCCCTACGTAACGACCGATGGCGT
TTTGTCCCTTTCTCGGAACTGCGTTCTAGCTGTGTCCGACCCTGGATGGC
AAGTTCGTGTACGACAGAACAAAAGCCAAGTGCGTGCTCCGCATTTTGTA
CATTCCAAGTCTTAGAACCAACCCGCATAGAACAGGCGGTGTCTCCCCTC
GAGAGCGAGTCTCTCCCGGGAGGCATCGTGTCGTTATAACGGCATTTTGT
TTTTTTATGAATTGATGATAGTTTTCAACGATTTTTCGTACGTTCCCAAA
TACTGTTGTTGGTTGAAAACTAATGATTTCATCTCTATGAAATGAAGATG
TCCATATATGTATATTTTCATATATATATATAATATATATATCCCCCTCC
CCCCCCTTTAACATGAAATTAATTTTAATATGGTCATTTATATACATATA
GAGAGAGACTATTTTTCACCGTTTTTTGCGTCAAATTTATTTCATGGGAG
TATTTTTTTTCTCTACGGCGGTCATCTCATCCAATTTTCTCTGTGGCATA
ACAATTTTGGTCATTCCTTTTTAAAAGTTTTGTTCGCCGTCTTCCTCTTT
TTTGTCGCTGGCCTGTCTACTTGCCTGTCTACCTGCCTGTCTACCTGCCT
GTCTACCTGCCTGCCTACGAAAAGAATCGTGACCTAGGGCGGGGCAAGAA
GAGTTGTATTCATGAATCCATGATCCCAGAGTGGATGGACCTGGTCATTT
GGGGTCATGAGCATGAGTGCCAGGCAAGTCAAGCTGTTTTTTTCCCTGTG
CGTTGGTTCCGTCAATTAACAGCGACACGCGGTCCAAAGGCTGCAGGTGT
ATTGCCCCGATATGTAGGCATCATGAGTTTGTATTACTAACACGCGGTGG
GAGCAGCAGCAGGCCTGTTCGTCCGTTCAACGTTGGAATTGATGGCGGCA
TCACGTGTTCTCTTCGTCCCTTCGGGATGTGGTACTTACGTGAAAGATCG
TTGACGGTTTGCATCCGATTCGTGTTGAAAACCACAATTTTTTCCGGCGT
TTGAACAGGAACTGCCCAAAAGCAAATCTGGGTGCCAAAAACAGGTATGC
GATGTGTTGCGTCCTGAGATTTGATACACCCTATGCTCTGTTATATTGAC
GAAAATATCTAAAAGAAACAGATCTCAGAGGGCTGCGTCCCGAAAGGGTT
ATGGGGATCCTTTTTCGTTCCGCAGGTAATTTTGCCGCTTTTGTATGAGT
CATTTCCCAACACAAGCTCAACACGAAAATGTCGTGAATTACAAGAGTCG
AATTCGCCGCGCTACCGTGTGATGGGTTTTGCAACTCGTTACCTGACCAC
GGTGTGCACCGATGATGACACGTAAAGAGCTCTCTCTATATAAATGCGTT
TGTATATGATATATTGATAATGCTACGACAAACGAGATACTGTATGCGGG
TAACACCGAGAGTGGGCAAGACGTGATCCATGATAGACGTGAGGATTACC
TCGAAGAACAAAAGCCTGACCACTGCGAAATTAGCTTCTCATGCTGCAGT
ACAGAACCCTACGTTGGATGCTCGATTTGTTCATTCACTCATTTCGTACT
TCACCCATCCCTCCCTCCCTCCCTCCCTCCGTTCATCTATTTATCCTTGC
ATACATTCACTCATCCACATCTACCCATCATTTAATTCTTGCACACCTTG
GATAAAGGAGCTGGTAAATGACCCAGCTATGCCTTCATGCTCATGTCGAA
TTTTGAAATACTAGCTGACCTTCAGACCTTTATTTGTATGATTTGTATTC
ATTTGTAGTGGGAGATGAAAGGTTGTGCATTCATCCATATATTCATGCGC
CCATCCATTCATCGATCCATCCATCCATTCATTCATCGATCCATCCATTC
ATTCATCGATCCATCCATTCATTCATCGATCCATCCATCCATTCATTCGT
CGATCCATCGATTCATTCATTGATCCATCGATTCATTCATTCATTCAATT
GTACGTCCACCTATTCGTGCGGTGTATGAAGCTATTCACCCCTCCGTCCA
TTTGGCCAATACCTGCTCCATCTTTCCATTAATTCGGCAGATCGACCCGA
TCGAGTCGTTGGTTGGGACATTCCGCATAGCCCAGCCCGGTTCATCGGTG
GCCACGTCCCTGTGTGAAGGAGAGTCAGTCGCGAAGCATGTAGGTATTCT
CGAGGTCAGGAGGAATGATTTCCGACTCATCAAGCAACCGCTCTCTCAGG
TGCGCGTGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig19014:300..4260-

>mRNA_H-paniculata_contig19014.4765.1 ID=mRNA_H-paniculata_contig19014.4765.1|Name=mRNA_H-paniculata_contig19014.4765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig19014:300..4260- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATGACGTCGAAGTGAACCCCATCTTGATCCAAAAAGGAAGGACGAA
GCTCGCGCTGTACGGCATGGGGAGCATGAGGGACGAGCGTCTCAACCGCA
TGTGGCAGCAGAAAAAGGTGGATGACGTCGAAGTGAACCCCATCTTGATC
CAAAAAGGAAGGACGAAGCTCGCGCTGTACGGCATGGGGAGCATGAGGGA
CGAGCGTCTCAACCGCATGTGGCAGCAGAAAAAGGTGAAGTTCCTCCGAC
CTCTGGAAGATGACGGTGGAAAGGATTTCTTCAATATCTTCATCCTGCAC
CAGGTGAAGTTCCTCCGACCTCTGGAAGATGACGGTGGAAAGGATTTCTT
CAATATCTTCATCCTGCACCAGAATCGTGACCTAGGGCGGGGCAAGAAGA
GTTGTATTCATGAATCCATGATCCCAGAGTGGATGGACCTGGTCATTTGG
GGTCATGAGCATGAGTGCCAGGCAAGTCAAGCTAATCGTGACCTAGGGCG
GGGCAAGAAGAGTTGTATTCATGAATCCATGATCCCAGAGTGGATGGACC
TGGTCATTTGGGGTCATGAGCATGAGTGCCAGGCAAGTCAAGCTATCGAC
CCGATCGAGTCGTTGGTTGGGACATTCCGCATAGCCCAGCCCGGTTCATC
GGTGGCCACGTCCCTGTGTGAAGGAGAGTCAGTCGCGAAGCATGTAGGTA
TTCTCGAGGTCAGGAGGAATGATTTCCGACTCATCAAGCAACCGCTCTCT
CAGGTGCGCGTGTGAATCGACCCGATCGAGTCGTTGGTTGGGACATTCCG
CATAGCCCAGCCCGGTTCATCGGTGGCCACGTCCCTGTGTGAAGGAGAGT
CAGTCGCGAAGCATGTAGGTATTCTCGAGGTCAGGAGGAATGATTTCCGA
CTCATCAAGCAACCGCTCTCTCAGGTGCGCGTGTGA
back to top