mRNA_H-paniculata_contig1900.4762.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: D8LEG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEG6_ECTSI) HSP 1 Score: 505 bits (1300), Expect = 4.570e-171 Identity = 270/418 (64.59%), Postives = 330/418 (78.95%), Query Frame = 1
Query: 337 SSCALLGWAATGGVKAFVPSVAPRSSLATCSSLQQHFVGALQARPAAK--------QRINRPGRGGLSMLTSSPRQPGGNGDDRVGPDEQSSRYHSRSKPCQYRAVKNMLSEAAVASVVYYWLEFRDDLTPQWLKQFTRAMGEIQDIGWQKHMGLLMRQEPEEILVRRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTELERHREDAVCRDKESAERDRKMVFDHDPLNNTSSPYRGKNYKLLLETITKAALRSYRSELRISGDRYTLNWVEKFMHRNDHEDGPNLQGNELMEAILDGPILLIKDPRTEKNRVIDPGHIGRQLMAFRSLEAQRVIEALSSVNADHSALNRQFLEERLQDQVQDVVLSQRRRRILEASAPENDFPTRDS 1566
+S +LG A TG AFV APR+ L T ++ V A P + +R +R GR ++M TSS R PG +G+D PDE + +A KNMLSE++VASVVYYWLEFRDDLTPQW+KQFT G+IQDIGW +H+GLL+R EPEE++VRR++QRP GGSGNNP+LK NRT EY VLIEPQ IA K+MQ+REQISREWI+DL L+SAEN+E+ERHRED++C D ES +RDRK+VFDHDPLNNTSSPYRGKNYKLLL+ ITKAA+R+YRSELR+SGDRYTLNW+EKFMHRND EDGPNL+GN+L+EAI+DGPI++IKDPRTEKNRVIDPGHIG QLM FR LEAQ V EA+ S+ +DH L RQFLEER++DQ+ +VVL+QRR+RI+EASAP++DFP+ DS
Sbjct: 6 TSLVVLGAAVTG--HAFV---APRAGLPTTTTSTSGLVRPFSAAPTTEAPSRLQCAERRSRVGRV-VAMATSSARGPG-DGEDARSPDE-----------LKAQAAKNMLSESSVASVVYYWLEFRDDLTPQWMKQFTYRNGDIQDIGWHQHLGLLLRAEPEEMVVRRLSQRPQGGSGNNPYLKANRTQMEYNVLIEPQKIASKVMQVREQISREWIQDLSLISAENSEVERHREDSLCLDSESKKRDRKLVFDHDPLNNTSSPYRGKNYKLLLDMITKAAVRAYRSELRVSGDRYTLNWLEKFMHRNDMEDGPNLKGNDLVEAIIDGPIVVIKDPRTEKNRVIDPGHIGGQLMNFRQLEAQLVTEAMESIPSDHVELKRQFLEERMRDQLDNVVLTQRRKRIVEASAPKDDFPSADS 405
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: A0A835YQU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU4_9STRA) HSP 1 Score: 252 bits (644), Expect = 2.390e-73 Identity = 143/327 (43.73%), Postives = 192/327 (58.72%), Query Frame = 1
Query: 622 RAVKNMLSEAAVASVVYYWLEFRDDLTPQWLKQFTRAMGEIQDIGWQKHMGLLMRQEPEEILVRRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTELERHREDAVCRDKESAERDRKMVFDHDPLN----------------NTSSPYRGKNYKL--------------------------LLETITKAALRSYRSELRISGDRYTLNWVEKFMHRNDHEDGPNLQGNELMEAILDGPILLIKDP---RTEKNRVIDPGHIGRQLMAFRSLEAQRVIEALSSVNADHSALNRQFLEE 1467
R+VKN+L+ A ASV YYW+EFRD+L P+WLK+F A + +GW +G LMR EPEE+ VR+MAQRP GGSGNNPFL R A EYTVLIEP IAK+IM +REQ+++EWI+DLELV EN EL RH D + D + A+ R++VFDHDP T PYRGKNY+ LL +T+ A+R Y +ELR SG RY NW+E+FM + G L+GN L+E++L+GP+++I ++K RVI+P I + +M R+ A+ + L +V DH L LE+
Sbjct: 63 RSVKNLLAVQASASVQYYWMEFRDELQPRWLKEFEEAGHNVGQVGWDHFLGSLMRTEPEEVTVRKMAQRPKGGSGNNPFLSDTRHAMEYTVLIEPFQIAKRIMTVREQLAQEWIKDLELVETENAELLRHHVDTLSMDAKQADSSRQLVFDHDPCAVEGEVLXXXXXXXXXYGTKLPYRGKNYRADSSRXXXXXXXXXXXXXXXXXXXXXELLAMVTRVAVRRYEAELRQSGHRYHQNWLERFMLKG----GKGLKGNALLESMLNGPMMMINPKVRGNSDKPRVIEPAQIAKGVMLRRATAAEEIRTILGTVPGDHLRLKASMLEQ 385
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: A0A836CAL6_9STRA (Alpha-type protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL6_9STRA) HSP 1 Score: 251 bits (642), Expect = 6.570e-70 Identity = 134/299 (44.82%), Postives = 202/299 (67.56%), Query Frame = 1
Query: 622 RAVKNMLSEAAVASVVYYWLEFRDDLTPQWLKQFTRAMGEIQDIGWQKHMGLLMRQEPEEILVRRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTELERHREDAVCRDKESAERDRKMVFDHDPLN-NTSSPYRGKNYKLLLETITKAALRSYRSELRISGDRYTLNWVEKFMHRNDHEDGPNLQGNELMEAILDGPILLIKDPRT----EKNRVIDPGHIGRQLMAFRSLEAQRVIEALSSVNADHSALNRQFLEERLQDQVQDVVLS 1503
++++N+L+ A A+V +YWLEFRD+L P WLK+F A + ++GW + LMR EPE I V++ AQRP GGSGNNPFL NRT EYTV+++P IAKKIM++REQ+++EW+RDL+L+ EN EL RH +D + + + A+R R++ F +DP N SP +NY+ L+E +TK ALR Y +ELR++G RY NW+E+F+ + G NL GN+LMEA+L+GP+++I +P+ +K ++I+P I + +M R A L+S+ DH+ L R FLE++L Q +V++
Sbjct: 409 QSLRNLLAVRASATVQHYWLEFRDELQPTWLKEFEEADHNVGEVGWDGFLTALMRSEPESITVKKKAQRPRGGSGNNPFLSDNRTQIEYTVVVKPYEIAKKIMKVREQLAQEWMRDLQLMDQENHELLRHHDDLLVMNADEADRARQLFFYNDPWGTNAKSPLHQQNYRELIELVTKVALRRYETELRMTGQRYHANWLERFLVK----AGDNLVGNDLMEAMLEGPMMMI-NPKVSGSADKPKMINPLQIAQGVMKRRVAAAAEFRSMLTSIPDDHAQLMRTFLEQQLGAQADSLVMA 702
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: D7FSH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSH1_ECTSI) HSP 1 Score: 177 bits (448), Expect = 1.130e-45 Identity = 99/284 (34.86%), Postives = 171/284 (60.21%), Query Frame = 1
Query: 634 NMLSEAAVASVVYYWLEFRDDLTPQWLKQFTRAMGEIQDIGWQKHMGLLMRQEPEEILVRRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTELER--HREDAVCRDKESAER--DRKMVFDHDPLNNTSSPYRGKN-YKLLLETITKAALRSYRSELRISGDRYTLNWVEKFMHRNDHEDGPNLQGNELMEAILDGPILLIKDPRTEKNRVIDPGHIGRQLMAFRSLEAQRVIEALSSVNADHSALNRQFLEER 1470
++++ A+ + YW+E R ++ +WL ++ G ++D+GW ++R PE+++V+++ + P GGSGNNPFL +R EY IEP IA+++M+IREQ++ + DL+ +SAEN L+ H E + D+ A R K + D DP + T +P R ++ YK LE +T A++R ++ELRI GD TL+W+++F R + +GN L+E++ GP++LIKDP ++ +V++P + +++M R + A+ +I L V DH A+ L E+
Sbjct: 82 DLITHNALLTANTYWMELRGNMYIEWLNRYIEERGGVEDVGWHAFFAGMLRAPPEDVVVKKLIKSPRGGSGNNPFLA-DRKPVEYNETIEPTTIARRLMEIREQVAEQLGSDLQQISAENARLQADYHYESELGPDRAQALRLSSLKPMTDVDPSSGTGNPPRRRSTYKDALELVTAASMRRVKAELRIRGDMVTLDWLDRFSSRELEQ-----RGNALLESLFAGPMVLIKDPLRDRPKVVEPLKVAQEIMQGREVVAEELITVLKGVPQDHLAMTVSLLNEK 359
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: A0A7S1TX02_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX02_9STRA) HSP 1 Score: 172 bits (435), Expect = 8.500e-44 Identity = 104/293 (35.49%), Postives = 166/293 (56.66%), Query Frame = 1
Query: 628 VKNMLSEAAVASVVYYWLEFRDDLTPQWLKQFTRAMGEIQDIGWQKHMGLLMRQEPEEILVRRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTELERHREDAVCRDKESAERDRKMVFD-HDPLNNTSSPYRGKNYKLLLETITKAALRSYRSELRISGDRYTLNWVEKFMHR--NDHE-DGPNLQGNELMEAILDGPILLIKDPRTEKNRVIDPGHIGRQLMAFRSLEAQRVIEALSSVNADHSALNRQFLEERLQDQVQDV 1494
+K++L+ A +V YY +EF D+ +WL +F + +++++G + + L++ EPEE+ +++M Q P GGSGNNP+LK A EYTVLI+P +IA+KIM +R QI++EW+ DL + A+N E+ R + + MV+D DP SSPYR KNY L + K A+ S LR W+E F + HE D +LQG+E+++ +L+ +++ R K R I+P + +M R+ A+ IEA S V +DH+ +N LE + + +DV
Sbjct: 49 IKDVLTVRAAQAVNYYSIEFHDETKVKWLDEFMKET-DVRELGSTQFIYRLLKTEPEEVNIKKMRQMPRGGSGNNPYLKDKGVAIEYTVLIDPMSIARKIMTVRAQIAKEWMHDLSTIEADNAEISRFYAEKQKESRGEGRAVHHMVYDADDPFVTDSSPYRSKNYADLKRVLAKDAVTSAIEHLRELRQTPVATWLESFAQKFAEKHEKDSDSLQGHEIIQELLESNYVMLPS-RNGKLRAIEPDKVAMLVMKHRAEHAKAWIEACSEVESDHTKINAMNLEFQYRSASEDV 339
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: A0A835Z7Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Q1_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.810e-37 Identity = 98/313 (31.31%), Postives = 168/313 (53.67%), Query Frame = 1
Query: 622 RAVKNMLSEAAVASVVYYWLEFRDDLTPQWLKQFTRAMG---EIQDIGWQKHMGLLMRQEPEEILVRRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTE-----------LERHREDAVCRDKESAERDR----KMVFDHDPLNNTSSPYRGKNYKLLLETITKAALRSYRSELRISGDRYTLNWVEKFMHRNDHEDGPNLQGNELMEAILDGPILLIKDPRTE-KNRVIDPGHIGRQ----------LMAFRSLEAQRVIEALSSVNADHSALNRQFLEERL 1473
R +KN+L+E ++ + +YYWLE R ++ +++ +FT G + GW+ + L+ PEE+++ ++ ++P GGSG NP+L + YT +IEP + ++I+ IR Q++ E DLEL+ +EN +++ +D + + A R R + V D D +N+T +PYR Y +L +TK +L Y+ ELRI GD++TL W++K N L GN+L+EA+L+GP++LI D + + +V+ P + +MA R + L+ V +H AL + LE +L
Sbjct: 10 RRLKNVLTEKSLQTAMYYWLELRGNMYSEYMARFTEGEGGGGSVVARGWRTFLSNLLSSPPEEVIIEKVVKKPRGGSGTNPYLAARKVVS-YTEVIEPMTLGRRILDIRAQLAAELFHDLELIESENERXXXXXXXXXXXVQQFYQDELRYGIKEATRLRLRTWQPVVDTDAINSTDTPYRSSLYLAVLALVTKVSLERYKKELRIVGDKHTLAWLDKIGDAN-----LTLSGNDLIEAMLNGPMVLINDGKDRARPKVVQPLRVAADXXXXXXXXXXVMALRVSVVREFKGLLAGVPQEHQALIQGVLERQL 316
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: A0A7S1TYK2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYK2_9STRA) HSP 1 Score: 113 bits (283), Expect = 2.790e-25 Identity = 54/127 (42.52%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 628 VKNMLSEAAVASVVYYWLEFRDDLTPQWLKQFTRAMGEIQDIGWQKHMGLLMRQEPEEILVRRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTELER 1008
+K++L+ A +V YY +EF D+ +WL +F + +++++G + + L++ EPEE+ +++M Q P GGSGNNP+LK A EYTVLI+P +IA+KIM +R QI++EW+ DL + A+N E+ R
Sbjct: 49 IKDVLTVRAAQAVNYYSIEFHDETKVKWLDEFMKET-DVRELGSTQFIYRLLKTEPEEVNIKKMRQMPRGGSGNNPYLKDKGVAIEYTVLIDPMSIARKIMTVRAQIAKEWMHDLSTIEADNAEISR 174
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: A0A6H5KLJ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLJ1_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 7.750e-17 Identity = 81/278 (29.14%), Postives = 131/278 (47.12%), Query Frame = 1
Query: 622 RAVKNMLSEAAVASVVYYWLEFRDDLTPQWLKQFT--RAMGE--IQDIGWQKHMGLLMRQEPEEILVRRMA----------QRPLGGSGNNPFLKPNR-------------------TAKEY---------TVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTELERHREDAVCRDKESAE------------RDRKMVFDH-DPLNNTSSPYRGKNYKLLLETITKAALRSYRSELRISGDRYTLNWVEKFMH--RNDHEDGPNLQGNELMEA 1284
RAVK+ML + AV +V + W E D+ QWL +FT + +G+ I +GW + + +MR+EP E +V R A QR + P L P R A +Y +V+++P +AKK+M IREQ++ EW DL+ + EN E+ R D R +E+ R++ +DH SSP R NY+ L+ +T+ A + +R+ GD NW+E+F++ + + + G G+E +E+
Sbjct: 77 RAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKARNNARPPTLSPWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENDEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEIAALVVQERMRVDGDDMGWNWMEQFLYWAKANSKYGSAAPGDESLES 354
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: B8CEG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEG8_THAPS) HSP 1 Score: 76.3 bits (186), Expect = 3.770e-11 Identity = 78/303 (25.74%), Postives = 141/303 (46.53%), Query Frame = 1
Query: 631 KNMLSEAAVASVVYYWLEFRDDLTPQWLKQF--TRAMGEIQDIG---------WQKHMGLLMRQEPEEILV--RRMAQRPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAEN-----TELERHREDAVCRDKESAERDRKMVFDHDPLNNT-------SSPYRGKNYKLLLETITKAALRSYRSELRISGDR-YTLNWVEKFMHRNDHE----DGPNLQGNELMEAILDGPILLIKDPRTEKNRVIDPGHIGRQLMAFRSLEAQRVIEALSSVNADHSALN 1449
K L++ + S ++ E RD + +W++ F + +G G W + +MRQ+ + ++V +R + G S NNP+L+ E+ + I P ++ ++++ +REQ+S E+ RDLE+V+ + + R R++ + DR V LNN SSP+R N+ LL T+A+ EL+ + D + W+++F E D P + ++ ++A+L P L++ + + DP I +++A RS AQ + V DH ALN
Sbjct: 17 KMFLTQRTIQSFIFLLAECRDPHSGKWIEDFLGVQNLGNYHGTGAFNVTKYPTWDSILLDMMRQKNDRMIVSAKRRGRGHGGWSKNNPYLQER--WMEFPIDIRPASLVQRLLPVREQLSNEFERDLEIVNTVDGMIMDSYFRRVRDERALDSSTDSAFDRISVH---ILNNFTEFQGSGSSPFRKGNFDLLYSLCTQASTHRLLRELQCTPDNEVSYQWLKRFYTERVREYFDGDQPFGRADDFIDALLRTPPSLMELSDGKSIGLTDPLRIAERIIALRSEIAQEWRVMMVEVKDDHLALN 314
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Match: A0A1E7ETW7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETW7_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 2.020e-8 Identity = 79/329 (24.01%), Postives = 144/329 (43.77%), Query Frame = 1
Query: 628 VKNMLSEAAVASVVYYWLEFRDDLTPQWLKQF-----------TRAMGEIQDIGWQKHMGLLMRQEPEEILVRRMAQ--RPLGGSGNNPFLKPNRTAKEYTVLIEPQAIAKKIMQIREQISREWIRDLELVSAENTEL----ERHREDAVCRD--------------------KESAERDRKM---VFDHDPL----------NNTSSPYRGKNYKLLLETITKAA----LRSYRSELRISGDRYTLNWVEKFMHRNDHEDGPNLQGNELMEAILDGPILLIKDPRTEKNRV---IDPGHIGRQLMAFRS---LEAQRVIEALSSVNAD 1434
++N L++ ++ S VY + R++ T +WL++ T A + + W + L P+E++V +M Q R SG N +++ EY + + P A+ ++I+ +REQ+S EW+ DL+++ N E+ E + ++A +D K +E ++K +FD + L N +SSPYR N+ LLL T+ + L+SY+ + + + Y H +H DG E LD + + KN + ++P + ++ RS LE R+ E +S + D
Sbjct: 88 IRNFLTQRSIQSFVYLLNQCREEHTVRWLEKTLDFTSIERFHGTGAFNQTKFPEWDS-VFLDYMDRPDEVIVIQMRQQRRQRKLSGYNSYIEI-----EYELHVNPSALVRRILSVREQLSNEWVEDLDMLMKLNDEILDTFEDYTKEATKKDLQEEXXXXXXXXXXXVDTGMKIKSEEEKKRHDTIFDRNVLFSWSQSLWSPNRSSSPYRKANFDLLLLLATQESIHRVLKSYKDDDEVRQETYEFLLDFYKDHVKNHFDGHQTYARS--EDFLDEMVTSSRTLIETKNEILAWVNPARVAEDIVRERSEVALEWMRISETISDEHTD 408 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1900.4762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1900.4762.1 >prot_H-paniculata_contig1900.4762.1 ID=prot_H-paniculata_contig1900.4762.1|Name=mRNA_H-paniculata_contig1900.4762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=424bp MRAVSSCALLGWAATGGVKAFVPSVAPRSSLATCSSLQQHFVGALQARPAback to top mRNA from alignment at H-paniculata_contig1900:11818..21278+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1900.4762.1 ID=mRNA_H-paniculata_contig1900.4762.1|Name=mRNA_H-paniculata_contig1900.4762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9461bp|location=Sequence derived from alignment at H-paniculata_contig1900:11818..21278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1900:11818..21278+ >mRNA_H-paniculata_contig1900.4762.1 ID=mRNA_H-paniculata_contig1900.4762.1|Name=mRNA_H-paniculata_contig1900.4762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2544bp|location=Sequence derived from alignment at H-paniculata_contig1900:11818..21278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |