mRNA_H-paniculata_contig190.4759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig190.4759.1
Unique NamemRNA_H-paniculata_contig190.4759.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig190.4759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig190contigH-paniculata_contig190:7338..7811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size476
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929457.452877-CDS-H-paniculata_contig190:7337..78111622929457.452877-CDS-H-paniculata_contig190:7337..7811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig190 7338..7811 +
1691480869.7554104-CDS-H-paniculata_contig190:7337..78111691480869.7554104-CDS-H-paniculata_contig190:7337..7811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig190 7338..7811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig190.4759.1prot_H-paniculata_contig190.4759.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig190 7338..7811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig190.4759.1

>prot_H-paniculata_contig190.4759.1 ID=prot_H-paniculata_contig190.4759.1|Name=mRNA_H-paniculata_contig190.4759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
PLAAAPPAPNINILNAQTRSVSVLSFFGCAKKAASPIQQIRALHYTTVQP
TKTNTYQHSTQNFLFKHGGWHNFCAPEYETLSTNSKTCPSLFSRRLRHSL
KPRTSPWPGPCAPLPPNSIPPHIIPESQLFTCQSVYVISLSSPMLPPAAL
TKTPRRCS
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mRNA from alignment at H-paniculata_contig190:7338..7811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig190.4759.1 ID=mRNA_H-paniculata_contig190.4759.1|Name=mRNA_H-paniculata_contig190.4759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig190:7338..7811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTCGCGGCCGCTCCCCCAGCCCCCAATATAAATATATTAAACGCTCA
GACTCGATCCGTCTCCGTTTTGTCATTTTTCGGGTGTGCCAAAAAGGCAG
CATCTCCGATCCAACAAATAAGAGCTTTACACTACACAACAGTACAACCA
ACAAAAACAAACACGTACCAACACTCGACACAAAATTTCCTGTTCAAACA
CGGGGGCTGGCATAATTTTTGTGCGCCAGAATACGAGACCTTATCTACAA
ATAGCAAAACATGCCCATCCCTTTTTTCCCGCCGTCTCCGACACTCCCTC
AAACCCCGAACCTCGCCCTGGCCCGGCCCTTGTGCGCCTCTCCCCCCAAA
CTCAATCCCACCTCACATTATTCCAGAATCCCAGCTGTTCACTTGCCAAA
GCGTGTACGTCATCTCTCTGTCTAGCCCAATGCTCCCGCCAGCTGCGCTC
ACAAAGACTCCTCGCCGTTGTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig190:7338..7811+

>mRNA_H-paniculata_contig190.4759.1 ID=mRNA_H-paniculata_contig190.4759.1|Name=mRNA_H-paniculata_contig190.4759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig190:7338..7811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTCGCGGCCGCTCCCCCAGCCCCCAATATAAATATATTAAACGCTCA
GACTCGATCCGTCTCCGTTTTGTCATTTTTCGGGTGTGCCAAAAAGGCAG
CATCTCCGATCCAACAAATAAGAGCTTTACACTACACAACAGTACAACCA
ACAAAAACAAACACGTACCAACACTCGACACAAAATTTCCTGTTCAAACA
CGGGGGCTGGCATAATTTTTGTGCGCCAGAATACGAGACCTTATCTACAA
ATAGCAAAACATGCCCATCCCTTTTTTCCCGCCGTCTCCGACACTCCCTC
AAACCCCGAACCTCGCCCTGGCCCGGCCCTTGTGCGCCTCTCCCCCCAAA
CTCAATCCCACCTCACATTATTCCAGAATCCCAGCTGTTCACTTGCCAAA
GCGTGTACGTCATCTCTCTGTCTAGCCCAATGCTCCCGCCAGCTGCGCTC
ACAAAGACTCCTCGCCGTTGTTCCCCTCTCGCGGCCGCTCCCCCAGCCCC
CAATATAAATATATTAAACGCTCAGACTCGATCCGTCTCCGTTTTGTCAT
TTTTCGGGTGTGCCAAAAAGGCAGCATCTCCGATCCAACAAATAAGAGCT
TTACACTACACAACAGTACAACCAACAAAAACAAACACGTACCAACACTC
GACACAAAATTTCCTGTTCAAACACGGGGGCTGGCATAATTTTTGTGCGC
CAGAATACGAGACCTTATCTACAAATAGCAAAACATGCCCATCCCTTTTT
TCCCGCCGTCTCCGACACTCCCTCAAACCCCGAACCTCGCCCTGGCCCGG
CCCTTGTGCGCCTCTCCCCCCAAACTCAATCCCACCTCACATTATTCCAG
AATCCCAGCTGTTCACTTGCCAAAGCGTGTACGTCATCTCTCTGTCTAGC
CCAATGCTCCCGCCAGCTGCGCTCACAAAGACTCCTCGCCGTTGTTCC
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