mRNA_H-paniculata_contig19.4756.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19.4756.1
Unique NamemRNA_H-paniculata_contig19.4756.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19.4756.1 vs. uniprot
Match: A0A6H5JDM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM8_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 2.650e-62
Identity = 141/340 (41.47%), Postives = 174/340 (51.18%), Query Frame = 2 
Query:   50 MISASPYPPFSRNFDDEHEYVDAAAKTMSSTADAALAFNSNNTNMFDSHRLPPTLRWKRSLAQHHRNNQPDQDMVPFTVK--TLIVGFQGGGASFAHTLLGLGNNNSEENANDDWVGTLVLP---------AGCVGGGGNSLEATDPYNATCNIFRK-------------KGG-----------------------------------------------------EGGKEDIAVALCSYRVPPAAAHAWARVLLDNVASDVVVGLTSVVVEPGRSNGWEGATLLATSQAEERPDCVEMSRGFQPLPTPSMVTGPAAALVSHCQRHGRAAMCFAVAKRPG 838
            MI+A+ YP FSRNF+DE +Y DAA         AA   NS  + +    +L P LRWKR             +     VK  TL+VGF+GGGASFA    GL    +EE    DW+GT+VLP         A   GG G+SL+ TDP N+ CNIFRK             KG                                                      EG   D+ V LC YRVPP  A +WA+ LL  + ++VVV LT+V  EPGRS GW GA LLAT++AEER DC++MS GFQPL TP+M++G  AALVS+CQRHG+AAMCFA A+ PG
Sbjct:    1 MIAATRYPAFSRNFEDEQDYADAAVS-------AARKANSLPSGV----KLAPILRWKRRQXXXXXXXXXXGEASSHKVKCKTLVVGFEGGGASFAQKCFGL---TAEE---ADWIGTVVLPGAPCSGADAASTTGGIGDSLDPTDPLNSACNIFRKTWAGKDNRGWNCDKGEGCGEAEPLSNGSNANGNPPGXXXXXXXXXXXXXXXXXXXXXXXXXXVASKDFHEGSGSDVLVVLCGYRVPPRQADSWAKALLGGIEAEVVVALTTVEAEPGRSEGWRGARLLATAEAEEREDCLKMSVGFQPLRTPTMLSGAPAALVSYCQRHGQAAMCFAAAESPG 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19.4756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDM8_9PHAE2.650e-6241.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19contigH-paniculata_contig19:45878..50886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_001870.1
Exons2
Model size1427
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19.4756.1prot_H-paniculata_contig19.4756.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19 46317..50837 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.5671794-UTR-H-paniculata_contig19:45877..463161622929456.5671794-UTR-H-paniculata_contig19:45877..46316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 45878..46316 -
1691480869.349222-UTR-H-paniculata_contig19:45877..463161691480869.349222-UTR-H-paniculata_contig19:45877..46316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 45878..46316 -
1622929456.6338143-UTR-H-paniculata_contig19:50837..508861622929456.6338143-UTR-H-paniculata_contig19:50837..50886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 50838..50886 -
1691480869.3805847-UTR-H-paniculata_contig19:50837..508861691480869.3805847-UTR-H-paniculata_contig19:50837..50886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 50838..50886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.5954254-CDS-H-paniculata_contig19:46316..465921622929456.5954254-CDS-H-paniculata_contig19:46316..46592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 46317..46592 -
1691480869.357498-CDS-H-paniculata_contig19:46316..465921691480869.357498-CDS-H-paniculata_contig19:46316..46592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 46317..46592 -
1622929456.6116378-CDS-H-paniculata_contig19:50174..508371622929456.6116378-CDS-H-paniculata_contig19:50174..50837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 50175..50837 -
1691480869.3647628-CDS-H-paniculata_contig19:50174..508371691480869.3647628-CDS-H-paniculata_contig19:50174..50837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 50175..50837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19.4756.1

>prot_H-paniculata_contig19.4756.1 ID=prot_H-paniculata_contig19.4756.1|Name=mRNA_H-paniculata_contig19.4756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
MISASPYPPFSRNFDDEHEYVDAAAKTMSSTADAALAFNSNNTNMFDSHR
LPPTLRWKRSLAQHHRNNQPDQDMVPFTVKTLIVGFQGGGASFAHTLLGL
GNNNSEENANDDWVGTLVLPAGCVGGGGNSLEATDPYNATCNIFRKKGGE
GGKEDIAVALCSYRVPPAAAHAWARVLLDNVASDVVVGLTSVVVEPGRSN
GWEGATLLATSQAEERPDCVEMSRGFQPLPTPSMVTGPAAALVSHCQRHG
RAAMCFAVAKRPGVSQEVSGAAFGCTVKALRLVAGDALANPADNSGVNVG
DEMAGIRGNLYV*
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mRNA from alignment at H-paniculata_contig19:45878..50886-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19.4756.1 ID=mRNA_H-paniculata_contig19.4756.1|Name=mRNA_H-paniculata_contig19.4756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5009bp|location=Sequence derived from alignment at H-paniculata_contig19:45878..50886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACGCACATCCCATCCGTACACGCACAAAGGTCGGTGCTACAACAAGAGA
TGATTTCAGCCTCTCCCTACCCGCCCTTCTCCCGAAACTTCGACGACGAG
CATGAGTATGTGGACGCCGCAGCGAAAACAATGTCCTCTACTGCCGATGC
GGCCTTGGCGTTCAACAGTAATAATACCAACATGTTCGATTCCCATCGCC
TGCCGCCAACCCTACGCTGGAAGCGCAGCCTTGCCCAGCACCACCGTAAC
AACCAACCTGACCAGGACATGGTGCCATTCACGGTCAAGACATTGATCGT
GGGTTTTCAGGGAGGCGGTGCTTCCTTCGCGCACACGTTGCTTGGACTTG
GTAACAACAATAGCGAAGAAAACGCTAACGATGACTGGGTCGGGACGCTG
GTTTTGCCGGCCGGCTGCGTCGGGGGAGGCGGAAACTCCCTAGAAGCGAC
GGATCCGTACAACGCCACCTGTAATATCTTCCGCAAGAAGGGGGGCGAGG
GAGGAAAAGAGGACATTGCGGTGGCACTGTGCAGTTACCGTGTACCCCCC
GCAGCGGCGCACGCGTGGGCGCGCGTACTCCTAGACAACGTGGCGTCCGA
TGTGGTGGTTGGATTGACGTCCGTCGTAGTGGAGCCTGGACGGAGTAACG
GATGGGAAGGAGCGACGTTGCTGGCGACCTCGCAAGCGGAGGAGCGACCA
GACTGCGTGGAGGTGAGACGGAGGAGGGGGCAGCAGGCTGTTGATTGGCA
AGCGTAGCGTGGATGTATTTGGGCGTGTGGCAAATAGTAGATGTCAAGGC
AAGCTCAACCAACAACGCTATGTTAGCGTCTAACAAACTGAACCGACATT
TGAGTTCTTGGTTGGCACCACCAACTCCACTTTAGTTTTTCGCATCCGAC
GTCCAGGCATACGAGTATGTCAGTACCAGTATAATGCTAGAACCGTGGTT
ACCCCCGTGCTGCCCATGCCTTACCCTCAACTCACATACAAAATGACTCG
CTGCGCTCGCACGAAGATTCGTTTTTCAGAAGCTACTTTAATACAGCTTT
TCAAAGCTGTTCCGAAAAGGAGCCGAAGACCCGCCCTAGTTTCCACAGAA
TCTCCACCTGATCGATGCCCACACGAGAAACAAGAAAAACCAACGTGCAT
GGCACGAAAACGGGAATTGGGAGTTGTCGTTGTTTAGACAACAGTCAAGT
GTAGAAAATACATACATATATACAGCACAGACGTGGATTTTTTTTCCTGC
TCTGCGCATCACCACAACAGCGCTTTCTCGGCGTCTTCTTCACCAGGTTA
TTTTTTGTTCCGAAACGGCCTTGTAGGAAGGCGCCCGAAGCGATTCCCCC
TTATGGACCCAAGTGCCTACATTAGAGGCCAGTTTACTATTTTGTGGAAT
GCGATAGATCATGGTTCACGCTTTGTTGTGCACGGACGCGAGTAGAACCA
ACGCCGGAACTCCTGTTATCCTTAACCCTAACTCCCATGTCCTAGGCCTA
GCTTCCGTTGGCAGGGTCACATCGTCATCGTTGACGCTGTTTACAAGCAC
AGCAGGTTTGGGGGCACGCTGTGGGTCCTCCCGGGTATGCATCGGCCTGA
TTTCACTTGCCATCGCAGTATCCTGAGTTTGTGTACCACAACCTCCACGT
TCGACAAAGTGGTGAACTCTACAGTTGCATTGTGATGAATTTTGACGCGC
GATTTCCGACACTACCGCGTGTAATAAAAAGGGAGGGGAGGGGGGTTTCG
AAAGGGGTAGGTGGAAACAAGTGCTTTTGGCGGGGGTGAGATCAGACCCG
TATGTCGACAACATATGAAAAATAGTACATGGAGATTGTGATGTGCTTTG
GTTATATATATTTAGAACATCAGATGCAACACCGTACAAACGGATATCGA
CTTTTTTTTACAGTATTCGCATACATCAAGGGCTGGCAATCAGTCGGAGC
GCCGTGTGCGTGATGCAGAGGTGGTACAGCTGACAGAATGCAGTACACAC
TAGCGATAAAAGCAGCGTTGACATTCCAGCGTTGCGTCGAATTTTGGCCT
TTTCGGGGCGCAGCACCATAAAATATTTCGGACTTCGACGGCCTTCTGCC
GAAGCGGTGTGAGGGCCGCTAAAGGTAGAGGGCAGTTTTGCCTCTGATTC
TGCGCAAGTCCAGGGTGGCGGATCGGTGCCGGGAACTGTCAGAACCTCCA
AAACACTTCTTAGTCTGACCACCGGTCTGAACAGTCAAACGCATTCGAAA
CATCACAAAAACGAATAGCATTTTCTTGGTTTGGTTGTTTCGATCAAAGT
CCATCGTTTACAGACTTGCGTTACACTAATACTATGATTTCTAGCGTCCT
CGCCATCCTGCCCAAAGGTTGTTTGAGTATTGATTATTTTTCAACCCACA
TGAGAATACACGAGCTTCCAATTATTCTTACAAGTAAAAGAGCAAATATC
GCGCGTTGAAATTTGAAGGGGTGTTGTCATTTCGTTTTTAGGGCGCTGTT
CCAGAGCCGGTACACCGGGCGAAAAATGGTCTCAACCTGACACAGTTTTT
TCCCATAATTCACGGCACACTCTCATACACCCACGGCGGCCATTCATCGA
AGAACCACTAGAAAAAAGTGCGTTTTGGCCTCATACTAAACTGTACCGAT
TGTAGACCAAAAAAGCACCCGGTGTAATGGGTTGGGGATTTTTTCCCGAA
AGCAAACCAGTTGTAGACCAATTTGGCAACGGAATCTTCCTACATGCTAC
ACACTAACGCAGCCCACCGCCGAGCAGAATGATACTGTCTTTCACGAAGG
CTGGACGTTGCTGGCTCGAACGACCACCACGCTGAATCTTTTTCTGGCCC
TTCCGCTGATGAAAGAACCCGAGAACAAGCACCAGGATACATGCTAGCAT
CATACCCAACCAAGTGTTGTCGGCATTTTAGGCTTGGTTGGTCGTGTTGA
TTCAAGAGGGGGTGGCTAAGTACGATTACCACACAGTCAAGGCTGGCAAG
TTGGCCAAAGAAATGTTCCGATTTGCGCTTAGGACAACACGCAGCCTCCT
CACTGCTGCACACAGCAAGAAGAGGGACCTGCTGTGTACGATTACCACAG
ACGATTGATTGAAGCAAGAGATACGAATTGGATATTTATTCCACGACATA
CTAGTATGATTCTTCGAACTGGGTGCGCTATAGAGCTCTATAGTGTGGAC
CTCTCTTGTTCGCCAACAAACATTTCCTTGAAAGTTGTTTTCCATCCGCA
GTACAATCATGGTGGGGAGTGGATCTTCAGGTGCTTGATACACGCATACG
TCAGCGCGGGGTATCTTCGTGCGAGGTGGACGTTGTATCAAAACAGCACC
ACCGGTAATGCACCGGGTGGTATTTAAAAATGTGTAGGTGTATATATCGA
CCAGTTTTGTGTAAGATCGAAGGAGGTGGAACCCCTCGACTTCAGCCAAC
GCAGCTTCATCCAGAACTCGGCGCCTGACGCGCCGCGAAACCTGGTTCTG
CAACACAACGCCTGTCTGGGCGCGAATTGTCCTTTTCAGTGCCGGGTCGC
AAAAGGCGGGATTGGCTATGACAAAAGTATTGGCAACCTCCCTCTTGGTA
AACTTGAGTGCTGTCTGTCCCTTGCAGGAACTCGTGTATTGGGTTACACT
GTTTAGCGTTTTGAGAGTGCAGTGTTGAGGTTAGGATGGGTATGTAGTTT
CTATTCGCCTTGCCCGGGTTTTGAATATTATGGATGAAAAAAAGAGTCCC
TCTTATAAGGTAGATAAGGGGGGCGAACATTGTTCCAAAACTGCGATTCC
CCACCCGCGTGTACTCGTTAAAATTGGAAATTCAACCAGTAGTGAGTAAT
TTATGCTGTTGCCAGCCACACACCCATCGGACATACCGTTGCGGCCCGTT
AATAAAAGTCTCTTCTTTGGACCGAGAGTCGAACCTCATTTTGGGCTCTT
GATCGAACTGTATTTTTTGTTATACCCCCTTTTCATATACTTGTAGACTA
AAGACATCGATAGATGACTCGTTTTTACTATTATCCCGTGTGTCTAATTT
TGCCGTCCGGCTCTCTAATGTACGCACATACAAAAAATATAGTGCCGCAA
TATTACATTCCCCGGGGAAAAGCTGGAGTAGTAATATGTCGAAGTATCGA
GGGTGCGTCTGTTTCGCTTCCCCATTCCCACCAGGCTTATTCCACCCCAA
TTATTACCTCTGTCAGCACTTGCGGCATCCATTAATTCATTAGTAACCCA
ATTAGTTTCTCTCTCTCTGACCCTATCAACAAAAATGCTTGCAGATGTCA
CGGGGCTTCCAGCCTCTGCCTACGCCTTCAATGGTCACGGGACCGGCCGC
TGCGCTGGTGTCGCATTGCCAACGGCATGGGCGCGCGGCGATGTGCTTCG
CGGTTGCGAAGCGGCCGGGAGTCAGTCAGGAGGTATCTGGAGCAGCGTTT
GGGTGCACGGTGAAGGCGCTGCGGTTGGTGGCGGGAGACGCATTGGCGAA
CCCTGCTGACAACTCTGGTGTTAACGTGGGAGACGAGATGGCTGGAATAA
GAGGAAATCTCTATGTCTAAGCAACATTTTTTTTTTCTTTTTGTACAAAG
ATATGGGGGGGGAGGGAGAGTGTTCAATCTGCAGTTGTATACACTCATCA
GCCAAGTTTATTCATTGAAGGGGGTAGAGTGGAAGGTATAGTGAGTAGGC
GAGGGTAGGGTAGCGTGTGTATTTGCTGTGTATCAAAATCGGACCTCTCC
GGGAAAGACACGCGCCCGTACCAATTCATCACAAGGTTTATTTCGGCATA
CATGAATTGCCTTTTTGTGCTGATTGTGTCCACAGTTGCAGCGGAGACAA
AACCCGTGGCTGTAGATGCACAAACTCAACCGACAGACATGCAAGCACCC
AACATTCACAAATTTGGGGAGGACGGTTTGGTTGCTTTGCCGTTGTTTCG
ACGAAGCTACTCTTCACGACTACGTCAGTGAAATGTGCAATAGTCCTGTC
GGTCACCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig19:45878..50886-

>mRNA_H-paniculata_contig19.4756.1 ID=mRNA_H-paniculata_contig19.4756.1|Name=mRNA_H-paniculata_contig19.4756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig19:45878..50886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTCAGCCTCTCCCTACCCGCCCTTCTCCCGAAACTTCGACGACGA
GCATGAGTATGTGGACGCCGCAGCGAAAACAATGTCCTCTACTGCCGATG
CGGCCTTGGCGTTCAACAGTAATAATACCAACATGTTCGATTCCCATCGC
CTGCCGCCAACCCTACGCTGGAAGCGCAGCCTTGCCCAGCACCACCGTAA
CAACCAACCTGACCAGGACATGGTGCCATTCACGGTCAAGACATTGATCG
TGGGTTTTCAGGGAGGCGGTGCTTCCTTCGCGCACACGTTGCTTGGACTT
GGTAACAACAATAGCGAAGAAAACGCTAACGATGACTGGGTCGGGACGCT
GGTTTTGCCGGCCGGCTGCGTCGGGGGAGGCGGAAACTCCCTAGAAGCGA
CGGATCCGTACAACGCCACCTGTAATATCTTCCGCAAGAAGGGGGGCGAG
GGAGGAAAAGAGGACATTGCGGTGGCACTGTGCAGTTACCGTGTACCCCC
CGCAGCGGCGCACGCGTGGGCGCGCGTACTCCTAGACAACGTGGCGTCCG
ATGTGGTGGTTGGATTGACGTCCGTCGTAGTGGAGCCTGGACGGAGTAAC
GGATGGGAAGGAGCGACGTTGCTGGCGACCTCGCAAGCGGAGGAGCGACC
AGACTGCGTGGAGATGATTTCAGCCTCTCCCTACCCGCCCTTCTCCCGAA
ACTTCGACGACGAGCATGAGTATGTGGACGCCGCAGCGAAAACAATGTCC
TCTACTGCCGATGCGGCCTTGGCGTTCAACAGTAATAATACCAACATGTT
CGATTCCCATCGCCTGCCGCCAACCCTACGCTGGAAGCGCAGCCTTGCCC
AGCACCACCGTAACAACCAACCTGACCAGGACATGGTGCCATTCACGGTC
AAGACATTGATCGTGGGTTTTCAGGGAGGCGGTGCTTCCTTCGCGCACAC
GTTGCTTGGACTTGGTAACAACAATAGCGAAGAAAACGCTAACGATGACT
GGGTCGGGACGCTGGTTTTGCCGGCCGGCTGCGTCGGGGGAGGCGGAAAC
TCCCTAGAAGCGACGGATCCGTACAACGCCACCTGTAATATCTTCCGCAA
GAAGGGGGGCGAGGGAGGAAAAGAGGACATTGCGGTGGCACTGTGCAGTT
ACCGTGTACCCCCCGCAGCGGCGCACGCGTGGGCGCGCGTACTCCTAGAC
AACGTGGCGTCCGATGTGGTGGTTGGATTGACGTCCGTCGTAGTGGAGCC
TGGACGGAGTAACGGATGGGAAGGAGCGACGTTGCTGGCGACCTCGCAAG
CGGAGGAGCGACCAGACTGCGTGGAGATGTCACGGGGCTTCCAGCCTCTG
CCTACGCCTTCAATGGTCACGGGACCGGCCGCTGCGCTGGTGTCGCATTG
CCAACGGCATGGGCGCGCGGCGATGTGCTTCGCGGTTGCGAAGCGGCCGG
GAGTCAGTCAGGAGGTATCTGGAGCAGCGTTTGGGTGCACGGTGAAGGCG
CTGCGGTTGGTGGCGGGAGACGCATTGGCGAACCCTGCTGACAACTCTGG
TGTTAACGTGGGAGACGAGATGGCTGGAATAAGAGGAAATCTCTATGTCT
AAATGTCACGGGGCTTCCAGCCTCTGCCTACGCCTTCAATGGTCACGGGA
CCGGCCGCTGCGCTGGTGTCGCATTGCCAACGGCATGGGCGCGCGGCGAT
GTGCTTCGCGGTTGCGAAGCGGCCGGGAGTCAGTCAGGAGGTATCTGGAG
CAGCGTTTGGGTGCACGGTGAAGGCGCTGCGGTTGGTGGCGGGAGACGCA
TTGGCGAACCCTGCTGACAACTCTGGTGTTAACGTGGGAGACGAGATGGC
TGGAATAAGAGGAAATCTCTATGTCTAA
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