mRNA_H-paniculata_contig19.4755.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19.4755.1
Unique NamemRNA_H-paniculata_contig19.4755.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19.4755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19contigH-paniculata_contig19:42552..45217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size2354
Cds size1551
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19.4755.1prot_H-paniculata_contig19.4755.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19 42576..44438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.464855-UTR-H-paniculata_contig19:42551..425751622929456.464855-UTR-H-paniculata_contig19:42551..42575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 42552..42575 +
1691480869.309886-UTR-H-paniculata_contig19:42551..425751691480869.309886-UTR-H-paniculata_contig19:42551..42575Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 42552..42575 +
1622929456.5053854-UTR-H-paniculata_contig19:44438..452171622929456.5053854-UTR-H-paniculata_contig19:44438..45217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 44439..45217 +
1691480869.3391683-UTR-H-paniculata_contig19:44438..452171691480869.3391683-UTR-H-paniculata_contig19:44438..45217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19 44439..45217 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929456.4783885-CDS-H-paniculata_contig19:42575..426861622929456.4783885-CDS-H-paniculata_contig19:42575..42686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 42576..42686 +
1691480869.319532-CDS-H-paniculata_contig19:42575..426861691480869.319532-CDS-H-paniculata_contig19:42575..42686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 42576..42686 +
1622929456.4924483-CDS-H-paniculata_contig19:42998..444381622929456.4924483-CDS-H-paniculata_contig19:42998..44438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 42999..44438 +
1691480869.3287957-CDS-H-paniculata_contig19:42998..444381691480869.3287957-CDS-H-paniculata_contig19:42998..44438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19 42999..44438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19.4755.1

>prot_H-paniculata_contig19.4755.1 ID=prot_H-paniculata_contig19.4755.1|Name=mRNA_H-paniculata_contig19.4755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=517bp
MRARWLASFSVAPLFFTLASTLVGLENQYSGVAALDKVPPEEGTNLRETD
DKAATTGISWASFSGRPQSEDRDFAIAAAAACHCIDVDETGEFPSDESLG
VFELGPSEVPPGGFKITAGQISLLFRQPQLRGGIGEDLRLPGDDDMGDLS
HVVNVSLSLGVPREAISARLAAAAGAFAAMTMAVRADPGDLSAAPEESEV
RSPGFANDADGSYILHEFALATEWAAGTPTVLLGLTMAYGNDGDWVKVNI
SVPLMHSESTADAIQIPYGANADGSVRVRGSSSATMMVVKGSFNWVSEAE
LWTLLDGPAVVADARVFDAHAVDSNTEPLLHATLCKRATGSETAAPRTRP
QPPASRMDELRATLTPFETQQPCSRRTSTDIDEFTQALQEKSGCGVEGHL
NTNPSTDSVVVVEIGDPEWTRETGRGMDVVLSLPRLLNWQPGQWKERRLK
IRRQEEEQERRQAYRRDKSRAEVGSTGSGGRGGGDGGDNVVSRFVKRVMS
AVRGRWRNFRKQKNNY*
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mRNA from alignment at H-paniculata_contig19:42552..45217+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19.4755.1 ID=mRNA_H-paniculata_contig19.4755.1|Name=mRNA_H-paniculata_contig19.4755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2666bp|location=Sequence derived from alignment at H-paniculata_contig19:42552..45217+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACGAGAACGAGCGAGGACGGTATGCGCGCACGATGGCTTGCATCCTT
CTCCGTGGCTCCTTTATTTTTTACGCTAGCCTCGACCCTCGTGGGCTTGG
AGAACCAGTACAGCGGTGTGGCCGCATTGGACAAGGTGACTACAACAATA
ATTACACTCAATTGGTTACATGTGTGAGACAGACAGACGACTCTGTCCGA
ATTTTGAACGGCGGTCACGTGTTTGATGTGGTAAGTTCCCGATACAAGTA
TCATATTACTTACGACGTCATACAGTAACAGCCGTCCGGCAGTACGGCAA
TACTTTACATGATTGTAGTATGACGTTCAATGAATGCAGCAGTATAGCGA
TACTTCTAGCCAATCTGTTGGACCCAATGGCATGAAGCCCTGCATAGATC
TACTCCACAGCGCCGCCGCATCGTTTCACCCGCACTTACACCTGCAGGTT
CCGCCAGAAGAAGGAACAAATCTGCGGGAAACTGACGATAAAGCTGCGAC
CACCGGAATCTCGTGGGCATCCTTTAGCGGAAGACCTCAGTCGGAAGATC
GAGACTTTGCAATAGCCGCGGCAGCTGCATGCCACTGTATTGACGTCGAC
GAGACCGGCGAGTTCCCTTCTGATGAAAGCCTCGGCGTCTTCGAACTGGG
CCCGAGCGAAGTGCCGCCGGGTGGGTTCAAGATAACTGCTGGACAAATAA
GCTTGTTATTTCGTCAACCGCAGTTGCGCGGAGGCATCGGTGAAGACTTG
CGGCTTCCTGGTGATGACGATATGGGCGATTTATCGCATGTAGTGAATGT
CAGCCTTTCGTTGGGAGTCCCTCGGGAAGCAATATCTGCGCGACTAGCTG
CTGCAGCCGGTGCTTTTGCGGCCATGACCATGGCGGTAAGAGCAGACCCA
GGGGATCTGAGCGCAGCACCTGAAGAGAGTGAAGTACGATCGCCCGGATT
CGCCAACGATGCGGACGGCAGCTACATTTTGCACGAGTTTGCGTTGGCAA
CCGAATGGGCAGCTGGAACTCCTACTGTCCTCCTAGGTCTCACCATGGCA
TATGGCAACGACGGGGACTGGGTGAAGGTCAACATAAGTGTTCCTCTCAT
GCACAGCGAGAGCACCGCAGATGCCATACAGATACCCTATGGCGCTAATG
CCGACGGTAGCGTTCGCGTCAGGGGAAGCAGTAGTGCGACTATGATGGTT
GTGAAAGGGAGTTTCAATTGGGTTTCGGAGGCAGAGTTGTGGACGCTGCT
AGACGGGCCCGCTGTCGTCGCCGACGCAAGAGTTTTCGATGCTCATGCAG
TCGACTCGAATACCGAGCCGCTGTTGCACGCAACGTTGTGCAAGCGCGCC
ACGGGCAGTGAGACAGCAGCACCAAGAACACGACCACAACCACCAGCATC
ACGAATGGACGAGCTTCGAGCAACCTTGACACCCTTCGAGACACAACAAC
CATGCTCTCGGCGTACGAGCACGGACATTGATGAATTTACCCAAGCGTTG
CAAGAGAAGAGTGGCTGTGGTGTCGAAGGACACTTGAATACGAATCCCTC
AACGGATAGTGTGGTGGTTGTAGAAATAGGCGATCCGGAGTGGACACGCG
AGACGGGGAGAGGCATGGATGTCGTCCTCTCGCTACCCCGCCTCTTGAAT
TGGCAGCCCGGGCAGTGGAAGGAGCGTAGGTTAAAAATACGGCGCCAGGA
AGAGGAGCAGGAACGTAGACAAGCGTATCGGCGGGATAAGTCTCGGGCCG
AGGTGGGGAGTACAGGCAGTGGCGGCAGAGGCGGTGGCGACGGTGGCGAT
AACGTTGTTTCTAGGTTTGTCAAGCGAGTGATGAGTGCTGTAAGAGGGCG
GTGGCGGAACTTCCGAAAACAAAAAAATAATTATTAACAGAATATTTCGG
TGTACGGCATATTGTTATCCCGCAGCAAGTAGTAGTGCCAGCGGAGTCTC
AAAACTGAGGATGTCTATTTCATTGTGGATCGAAGAGTTTTGATAATTCT
AGAGGCAACGGTAAATCAATCATGCGAAACCTCAAAGATCTGGTATGAAC
GCGCGCGATGTCAGCGTTTGCCAGTGGTTGGTTTTCTAAATTCAATTGTT
GGTCCCCAATAGTCGACTAGAAGAGACAAAAAAATGGAGGCAGTAATGTT
TTTTCTGTATTGTCTGTGTCTCTTTTTCGCGTCATCTCTCTTTTGGCTTG
TCCAAATTCGTCGAAAGTAGGTGCATTATTTAGATACTTTTTTAAGACAA
GGATAGGTTGAGCTCCTCATTTTTCTGTTTGAACCTTAAAATTTTAATTC
CTGTTCAAACGTTTTACCTTCAATGAAACGTCCATCCTCCATTTAAAGAG
TCGTTAATTGGACTTACTGTGGAGTGTCTGGGCTTTCAAGTACGCGGCAT
CATTTCGTGAGCGGGCAAAATAGCAGGCAAGTTTTGCGATTTCTGATCCG
CCCAGCAGATCTCTCCCTTTGTCCCCGGGCTTGATAGGAGATCAACTTTG
CTTGGCATTTTTCGCCGTCACCGTGGCGTAGTAAGGCTGAATTTGAAAAA
CGCCACCAGGAGGTCAAGGGGCCGGGCGGGATCCTGTGGTTGAAGGTTGC
CATTTCCTGACGCTTAGAATAGTGATTGATGCATGCTGGTATGTTCATTT
GCTGTGTCAGAAACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig19:42552..45217+

>mRNA_H-paniculata_contig19.4755.1 ID=mRNA_H-paniculata_contig19.4755.1|Name=mRNA_H-paniculata_contig19.4755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3102bp|location=Sequence derived from alignment at H-paniculata_contig19:42552..45217+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGCACGATGGCTTGCATCCTTCTCCGTGGCTCCTTTATTTTTTAC
GCTAGCCTCGACCCTCGTGGGCTTGGAGAACCAGTACAGCGGTGTGGCCG
CATTGGACAAGATGCGCGCACGATGGCTTGCATCCTTCTCCGTGGCTCCT
TTATTTTTTACGCTAGCCTCGACCCTCGTGGGCTTGGAGAACCAGTACAG
CGGTGTGGCCGCATTGGACAAGGTTCCGCCAGAAGAAGGAACAAATCTGC
GGGAAACTGACGATAAAGCTGCGACCACCGGAATCTCGTGGGCATCCTTT
AGCGGAAGACCTCAGTCGGAAGATCGAGACTTTGCAATAGCCGCGGCAGC
TGCATGCCACTGTATTGACGTCGACGAGACCGGCGAGTTCCCTTCTGATG
AAAGCCTCGGCGTCTTCGAACTGGGCCCGAGCGAAGTGCCGCCGGGTGGG
TTCAAGATAACTGCTGGACAAATAAGCTTGTTATTTCGTCAACCGCAGTT
GCGCGGAGGCATCGGTGAAGACTTGCGGCTTCCTGGTGATGACGATATGG
GCGATTTATCGCATGTAGTGAATGTCAGCCTTTCGTTGGGAGTCCCTCGG
GAAGCAATATCTGCGCGACTAGCTGCTGCAGCCGGTGCTTTTGCGGCCAT
GACCATGGCGGTAAGAGCAGACCCAGGGGATCTGAGCGCAGCACCTGAAG
AGAGTGAAGTACGATCGCCCGGATTCGCCAACGATGCGGACGGCAGCTAC
ATTTTGCACGAGTTTGCGTTGGCAACCGAATGGGCAGCTGGAACTCCTAC
TGTCCTCCTAGGTCTCACCATGGCATATGGCAACGACGGGGACTGGGTGA
AGGTCAACATAAGTGTTCCTCTCATGCACAGCGAGAGCACCGCAGATGCC
ATACAGATACCCTATGGCGCTAATGCCGACGGTAGCGTTCGCGTCAGGGG
AAGCAGTAGTGCGACTATGATGGTTGTGAAAGGGAGTTTCAATTGGGTTT
CGGAGGCAGAGTTGTGGACGCTGCTAGACGGGCCCGCTGTCGTCGCCGAC
GCAAGAGTTTTCGATGCTCATGCAGTCGACTCGAATACCGAGCCGCTGTT
GCACGCAACGTTGTGCAAGCGCGCCACGGGCAGTGAGACAGCAGCACCAA
GAACACGACCACAACCACCAGCATCACGAATGGACGAGCTTCGAGCAACC
TTGACACCCTTCGAGACACAACAACCATGCTCTCGGCGTACGAGCACGGA
CATTGATGAATTTACCCAAGCGTTGCAAGAGAAGAGTGGCTGTGGTGTCG
AAGGACACTTGAATACGAATCCCTCAACGGATAGTGTGGTGGTTGTAGAA
ATAGGCGATCCGGAGTGGACACGCGAGACGGGGAGAGGCATGGATGTCGT
CCTCTCGCTACCCCGCCTCTTGAATTGGCAGCCCGGGCAGTGGAAGGAGC
GTAGGTTAAAAATACGGCGCCAGGAAGAGGAGCAGGAACGTAGACAAGCG
TATCGGCGGGATAAGTCTCGGGCCGAGGTGGGGAGTACAGGCAGTGGCGG
CAGAGGCGGTGGCGACGGTGGCGATAACGTTGTTTCTAGGTTTGTCAAGC
GAGTGATGAGTGCTGTAAGAGGGCGGTGGCGGAACTTCCGAAAACAAAAA
AATAATTATTAAGTTCCGCCAGAAGAAGGAACAAATCTGCGGGAAACTGA
CGATAAAGCTGCGACCACCGGAATCTCGTGGGCATCCTTTAGCGGAAGAC
CTCAGTCGGAAGATCGAGACTTTGCAATAGCCGCGGCAGCTGCATGCCAC
TGTATTGACGTCGACGAGACCGGCGAGTTCCCTTCTGATGAAAGCCTCGG
CGTCTTCGAACTGGGCCCGAGCGAAGTGCCGCCGGGTGGGTTCAAGATAA
CTGCTGGACAAATAAGCTTGTTATTTCGTCAACCGCAGTTGCGCGGAGGC
ATCGGTGAAGACTTGCGGCTTCCTGGTGATGACGATATGGGCGATTTATC
GCATGTAGTGAATGTCAGCCTTTCGTTGGGAGTCCCTCGGGAAGCAATAT
CTGCGCGACTAGCTGCTGCAGCCGGTGCTTTTGCGGCCATGACCATGGCG
GTAAGAGCAGACCCAGGGGATCTGAGCGCAGCACCTGAAGAGAGTGAAGT
ACGATCGCCCGGATTCGCCAACGATGCGGACGGCAGCTACATTTTGCACG
AGTTTGCGTTGGCAACCGAATGGGCAGCTGGAACTCCTACTGTCCTCCTA
GGTCTCACCATGGCATATGGCAACGACGGGGACTGGGTGAAGGTCAACAT
AAGTGTTCCTCTCATGCACAGCGAGAGCACCGCAGATGCCATACAGATAC
CCTATGGCGCTAATGCCGACGGTAGCGTTCGCGTCAGGGGAAGCAGTAGT
GCGACTATGATGGTTGTGAAAGGGAGTTTCAATTGGGTTTCGGAGGCAGA
GTTGTGGACGCTGCTAGACGGGCCCGCTGTCGTCGCCGACGCAAGAGTTT
TCGATGCTCATGCAGTCGACTCGAATACCGAGCCGCTGTTGCACGCAACG
TTGTGCAAGCGCGCCACGGGCAGTGAGACAGCAGCACCAAGAACACGACC
ACAACCACCAGCATCACGAATGGACGAGCTTCGAGCAACCTTGACACCCT
TCGAGACACAACAACCATGCTCTCGGCGTACGAGCACGGACATTGATGAA
TTTACCCAAGCGTTGCAAGAGAAGAGTGGCTGTGGTGTCGAAGGACACTT
GAATACGAATCCCTCAACGGATAGTGTGGTGGTTGTAGAAATAGGCGATC
CGGAGTGGACACGCGAGACGGGGAGAGGCATGGATGTCGTCCTCTCGCTA
CCCCGCCTCTTGAATTGGCAGCCCGGGCAGTGGAAGGAGCGTAGGTTAAA
AATACGGCGCCAGGAAGAGGAGCAGGAACGTAGACAAGCGTATCGGCGGG
ATAAGTCTCGGGCCGAGGTGGGGAGTACAGGCAGTGGCGGCAGAGGCGGT
GGCGACGGTGGCGATAACGTTGTTTCTAGGTTTGTCAAGCGAGTGATGAG
TGCTGTAAGAGGGCGGTGGCGGAACTTCCGAAAACAAAAAAATAATTATT
AA
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