mRNA_H-paniculata_contig18989.4747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18989.4747.1
Unique NamemRNA_H-paniculata_contig18989.4747.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A6H5JFJ1_9PHAE (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ1_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.300e-54
Identity = 114/170 (67.06%), Postives = 128/170 (75.29%), Query Frame = 1 
Query:    1 SPARSPPVQQTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGAGRACVGAGGDAPKASLGSSDGVGVGDKRGCTAGNGLLSAMEGYMRRSGEEVEEKASRMGTEGWKEYLRKKADKSTTVGV 510
            +PAR       AASRG++V+IAGAGGAAHLPGMVAAM PLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNA NAGLLAVR+L +G      GG+A  A+    +G G G       G+ LL AM+ YM RSG+EVEEKA +M  +GWK YL  K DKSTTVGV
Sbjct:  378 TPARMTAFATGAASRGIRVVIAGAGGAAHLPGMVAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNATNAGLLAVRMLASG------GGEASPATGPPGEGGGGG-----VEGSPLLRAMDEYMARSGKEVEEKALKMEEQGWKAYLSAKIDKSTTVGV 536
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A1Q2TTT2_9SYNE (N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A1Q2TTT2_9SYNE)

HSP 1 Score: 137 bits (344), Expect = 6.540e-38
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 SPARSPPVQQTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGA 273
            +P R     QTAA RGLKVIIAGAGGAAHLPGMVAA+ PLPVIGVPVKTSTLSGVDSL+SIVQMP G+PVATV IGNA NAGLLAV+ILGA
Sbjct:   45 TPERMVTYAQTAAERGLKVIIAGAGGAAHLPGMVAALTPLPVIGVPVKTSTLSGVDSLYSIVQMPSGIPVATVAIGNATNAGLLAVQILGA 135
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A7R9Y8U5_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8U5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.400e-37
Identity = 91/161 (56.52%), Postives = 104/161 (64.60%), Query Frame = 1 
Query:   28 QTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGAGRACVGAGGDAPKASLGSSDGVGVGDKRGCTAGNGLLSAMEGYMRRSGEEVEEKASRMGTEGWKEYLRKKADKSTTVGV 510
            Q+AASRGLKVIIAGAGGAAHLPGMV+A+ PLPVIGVPVKTSTLSGVDSL+SIVQMPRGVPVATV IGNA NAGLLA R+LG      G GG  P  +                    L++ ME +   S  EV  KA  +   G+++YL      S  VGV
Sbjct:  253 QSAASRGLKVIIAGAGGAAHLPGMVSALTPLPVIGVPVKTSTLSGVDSLYSIVQMPRGVPVATVAIGNAKNAGLLAARMLG------GCGGLPPAQAA------------------ELVARMETFQSESESEVLRKAETLEGVGYEQYLASMGGGSKVVGV 389
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A4P8WXT8_9SYNE (N5-carboxyaminoimidazole ribonucleotide mutase n=7 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A4P8WXT8_9SYNE)

HSP 1 Score: 135 bits (341), Expect = 1.860e-37
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 SPARSPPVQQTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGA 273
            +P R     QTA  RGLKVIIAGAGGAAHLPGMVAA+ PLPVIGVPVKTSTLSGVDSL+SIVQMPRG+PVATV IGNA NAGLLAV++LGA
Sbjct:   45 TPERMVEYAQTAHERGLKVIIAGAGGAAHLPGMVAALTPLPVIGVPVKTSTLSGVDSLYSIVQMPRGIPVATVAIGNATNAGLLAVQMLGA 135
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A835YZI5_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI5_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.710e-37
Identity = 78/90 (86.67%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 SPARSPPVQQTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILG 270
            +PAR     QTAA+RGL+VIIAGAGGAAHLPGM AAM PLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATV IGNAMNAGLLAVR+LG
Sbjct:  408 TPARLVTYSQTAAARGLRVIIAGAGGAAHLPGMCAAMTPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVAIGNAMNAGLLAVRMLG 497
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A7S2G7J7_9DINO (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2G7J7_9DINO)

HSP 1 Score: 133 bits (335), Expect = 4.850e-37
Identity = 87/159 (54.72%), Postives = 100/159 (62.89%), Query Frame = 1 
Query:   28 QTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGAGRACVGAGGDAPKASLGSSDGVGVGDKRGCTAGNGLLSAMEGYMRRSGEEVEEKASRMGTEGWKEYLRKKADKSTTV 504
            ++AA RGL+VI+AGAGGAAHLPGMVAA+  LPVIGVPVKTS LSGVDSL+SIVQMP+GVPVATV IGNA NAGLLA+R+L       G GGDA  ASL                       M  +   +  EVEEKA+ +   G   YL     KS TV
Sbjct:    6 RSAAGRGLRVIVAGAGGAAHLPGMVAALTVLPVIGVPVKTSALSGVDSLYSIVQMPKGVPVATVAIGNARNAGLLAIRML------AGCGGDAKLASL-----------------------MAKFQDDARSEVEEKAATLEEVGEAAYLASSGKKSATV 135
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A9V1Z8_MONBE (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V1Z8_MONBE)

HSP 1 Score: 141 bits (356), Expect = 2.210e-36
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:   28 QTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGA 273
            +TA  RGLKVIIAGAGGAAHLPGMVAAM PLPVIGVP+KTSTLSGVDSLHSIVQMPRGVPVATV IGNAMNAGLLA RILGA
Sbjct:  433 ETAVDRGLKVIIAGAGGAAHLPGMVAAMTPLPVIGVPIKTSTLSGVDSLHSIVQMPRGVPVATVAIGNAMNAGLLAARILGA 514
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: K9PY39_9CYAN (N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=K9PY39_9CYAN)

HSP 1 Score: 132 bits (332), Expect = 4.240e-36
Identity = 72/91 (79.12%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 SPARSPPVQQTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGA 273
            +P R     +TA  RG+KVIIAGAGGAAHLPGMVAA+  LPVIGVPVKT TLSGVDSL+SIVQMPRG+PVATV IGNAMNAGLLAV+ILGA
Sbjct:   45 TPERMVEYAETAHERGIKVIIAGAGGAAHLPGMVAALTALPVIGVPVKTRTLSGVDSLYSIVQMPRGIPVATVAIGNAMNAGLLAVQILGA 135
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A7S2TYW5_9EUKA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYW5_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 1.220e-35
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:   28 QTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILG 270
            Q+A  RGLKVIIAGAGGAAHLPGMVAA+ PLPVIGVPVKTSTLSGVDSL+SIVQMPRGVPVATV IGN+ NAGLLAVR+LG
Sbjct:  122 QSAMGRGLKVIIAGAGGAAHLPGMVAALTPLPVIGVPVKTSTLSGVDSLYSIVQMPRGVPVATVAIGNSTNAGLLAVRMLG 202
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BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Match: A0A7S2FYN4_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FYN4_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.340e-35
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 SPARSPPVQQTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTSTLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGAG 276
            +PAR     + AA RGLKVIIAGAGGAAHLPGMVAAM PLPVIGVPVK+STLSGVDSL+SIVQMPRGVPVATV IGNAMNAGLLAVR+LG G
Sbjct:  432 TPARLYSYAEDAAGRGLKVIIAGAGGAAHLPGMVAAMTPLPVIGVPVKSSTLSGVDSLYSIVQMPRGVPVATVAIGNAMNAGLLAVRMLGCG 523
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18989.4747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFJ1_9PHAE1.300e-5467.06Phosphoribosylaminoimidazole carboxylase n=1 Tax=E... [more]
A0A1Q2TTT2_9SYNE6.540e-3882.42N5-carboxyaminoimidazole ribonucleotide mutase n=2... [more]
A0A7R9Y8U5_9STRA1.400e-3756.52Phosphoribosylaminoimidazole carboxylase n=1 Tax=P... [more]
A0A4P8WXT8_9SYNE1.860e-3781.32N5-carboxyaminoimidazole ribonucleotide mutase n=7... [more]
A0A835YZI5_9STRA2.710e-3786.67Phosphoribosylaminoimidazole carboxylase n=1 Tax=T... [more]
A0A7S2G7J7_9DINO4.850e-3754.72Phosphoribosylaminoimidazole carboxylase n=1 Tax=A... [more]
A9V1Z8_MONBE2.210e-3691.46Phosphoribosylaminoimidazole carboxylase n=1 Tax=M... [more]
K9PY39_9CYAN4.240e-3679.12N5-carboxyaminoimidazole ribonucleotide mutase n=2... [more]
A0A7S2TYW5_9EUKA1.220e-3587.65Phosphoribosylaminoimidazole carboxylase n=1 Tax=L... [more]
A0A7S2FYN4_9STRA1.340e-3583.70Phosphoribosylaminoimidazole carboxylase n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18989contigH-paniculata_contig18989:1486..1998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog67593.Physo116990
Preferred nameADE2
KEGG rclassRC00590
KEGG koko:K11808
KEGG ReactionR04209
KEGG Pathwayko00230,ko01100,ko01110,map00230,map01100,map01110
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004638,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009113,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009405,GO:0009987,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042440,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044419,GO:0044424,GO:0044464,GO:0046040,GO:0046083,GO:0046084,GO:0046112,GO:0046148,GO:0046390,GO:0046483,GO:0051704,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.AIR carboxylase
EggNOG OGs3QB4X@4776,COG0152@1,KOG2835@2759
Ec32 ortholog descriptionPhosphoribosylaminoimidazole carboxylase PurE domain
Ec32 orthologEc-10_003280.1
EC4.1.1.21
COG Functional cat.F
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size513
Cds size513
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929455.8268917-CDS-H-paniculata_contig18989:1485..19981622929455.8268917-CDS-H-paniculata_contig18989:1485..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18989 1486..1998 -
1691480869.0357716-CDS-H-paniculata_contig18989:1485..19981691480869.0357716-CDS-H-paniculata_contig18989:1485..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18989 1486..1998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18989.4747.1prot_H-paniculata_contig18989.4747.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18989 1486..1998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18989.4747.1

>prot_H-paniculata_contig18989.4747.1 ID=prot_H-paniculata_contig18989.4747.1|Name=mRNA_H-paniculata_contig18989.4747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
SPARSPPVQQTAASRGLKVIIAGAGGAAHLPGMVAAMCPLPVIGVPVKTS
TLSGVDSLHSIVQMPRGVPVATVGIGNAMNAGLLAVRILGAGRACVGAGG
DAPKASLGSSDGVGVGDKRGCTAGNGLLSAMEGYMRRSGEEVEEKASRMG
TEGWKEYLRKKADKSTTVGV*
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mRNA from alignment at H-paniculata_contig18989:1486..1998-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18989.4747.1 ID=mRNA_H-paniculata_contig18989.4747.1|Name=mRNA_H-paniculata_contig18989.4747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at H-paniculata_contig18989:1486..1998- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCCGCCCGCTCACCCCCGGTGCAACAGACGGCCGCTTCCAGGGGTCT
CAAAGTAATCATCGCCGGAGCCGGCGGCGCCGCACACCTCCCGGGGATGG
TAGCCGCTATGTGCCCTCTTCCCGTAATAGGCGTTCCTGTCAAAACTTCC
ACCCTCAGCGGGGTGGACTCGTTGCACAGCATCGTGCAAATGCCCAGGGG
AGTCCCCGTGGCCACGGTCGGTATCGGAAATGCTATGAACGCCGGTTTGC
TAGCGGTGCGCATTTTGGGGGCGGGGCGTGCGTGTGTGGGTGCAGGCGGT
GATGCGCCGAAGGCCAGCCTGGGTAGTTCTGATGGTGTTGGTGTTGGTGA
TAAGAGGGGGTGCACGGCGGGGAATGGTTTGTTGAGTGCGATGGAGGGGT
ATATGCGACGCTCTGGGGAGGAGGTGGAAGAGAAGGCGTCGAGGATGGGG
ACGGAAGGGTGGAAGGAGTACTTGAGAAAGAAGGCCGATAAGAGTACCAC
GGTTGGTGTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18989:1486..1998-

>mRNA_H-paniculata_contig18989.4747.1 ID=mRNA_H-paniculata_contig18989.4747.1|Name=mRNA_H-paniculata_contig18989.4747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig18989:1486..1998- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCCGCCCGCTCACCCCCGGTGCAACAGACGGCCGCTTCCAGGGGTCT
CAAAGTAATCATCGCCGGAGCCGGCGGCGCCGCACACCTCCCGGGGATGG
TAGCCGCTATGTGCCCTCTTCCCGTAATAGGCGTTCCTGTCAAAACTTCC
ACCCTCAGCGGGGTGGACTCGTTGCACAGCATCGTGCAAATGCCCAGGGG
AGTCCCCGTGGCCACGGTCGGTATCGGAAATGCTATGAACGCCGGTTTGC
TAGCGGTGCGCATTTTGGGGGCGGGGCGTGCGTGTGTGGGTGCAGGCGGT
GATGCGCCGAAGGCCAGCCTGGGTAGTTCTGATGGTGTTGGTGTTGGTGA
TAAGAGGGGGTGCACGGCGGGGAATGGTTTGTTGAGTGCGATGGAGGGGT
ATATGCGACGCTCTGGGGAGGAGGTGGAAGAGAAGGCGTCGAGGATGGGG
ACGGAAGGGTGGAAGGAGTACTTGAGAAAGAAGGCCGATAAGAGTACCAC
GGTTGGTGTATAATCGCCCGCCCGCTCACCCCCGGTGCAACAGACGGCCG
CTTCCAGGGGTCTCAAAGTAATCATCGCCGGAGCCGGCGGCGCCGCACAC
CTCCCGGGGATGGTAGCCGCTATGTGCCCTCTTCCCGTAATAGGCGTTCC
TGTCAAAACTTCCACCCTCAGCGGGGTGGACTCGTTGCACAGCATCGTGC
AAATGCCCAGGGGAGTCCCCGTGGCCACGGTCGGTATCGGAAATGCTATG
AACGCCGGTTTGCTAGCGGTGCGCATTTTGGGGGCGGGGCGTGCGTGTGT
GGGTGCAGGCGGTGATGCGCCGAAGGCCAGCCTGGGTAGTTCTGATGGTG
TTGGTGTTGGTGATAAGAGGGGGTGCACGGCGGGGAATGGTTTGTTGAGT
GCGATGGAGGGGTATATGCGACGCTCTGGGGAGGAGGTGGAAGAGAAGGC
GTCGAGGATGGGGACGGAAGGGTGGAAGGAGTACTTGAGAAAGAAGGCCG
ATAAGAGTACCACGGTTGGTGTATAA
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