mRNA_H-paniculata_contig18979.4741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: D7FZE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE4_ECTSI) HSP 1 Score: 328 bits (841), Expect = 1.180e-107 Identity = 195/297 (65.66%), Postives = 217/297 (73.06%), Query Frame = 1
Query: 10 QNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPT------------AVAKSVPAAPSGSSSIAGTAGPGV--GGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALLLAQMDI 858
+NQAKI KMI+Q+AIDQNY MAMEEAPEVFARVSMLYIDTEIN VRVKAFVDSGAQSTIMSA CAEKCGLMRLVD RFHGEARGVGTGKILGRIHMAQIKIG H+FPCSFTIL+TSDVDFLFGLDMLKRHLCVIDLKS+ + LGSAG +VPFLSEKDLP+S RET+ EDL K+ PAAA + S+ ++ APT A+ PA A GGA EE+KV QL MGFSR+QAEG L+STGG+ E+AA LLLAQMD+
Sbjct: 165 ENQAKIQKMIDQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKK------PAAAESSGSSXSV--------------ETAPTGXXXXXXXXXXXAMDTETPATXXXXXXXXXPAXXXXXXAGGA-EEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQMDL 440
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A6H5L2G1_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G1_9PHAE) HSP 1 Score: 291 bits (746), Expect = 1.290e-94 Identity = 148/176 (84.09%), Postives = 160/176 (90.91%), Query Frame = 1
Query: 10 QNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSA 537
+NQAKI KMIEQ+AID NY MAMEEAPEVFARVSMLYIDTEIN VRVKAFVDSGAQSTIMSA CAEKCGLMRLVD RFHGEARGVGTGKILGRIHMAQIKIG H+FPCSFTIL+TSDVDFLFGLDMLKRHLCVIDLKS+ + LGSAG +VPFLSEKDLP+S RET+ +R++ A
Sbjct: 165 ENQAKIQKMIEQEAIDHNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQASGGSREQKA 340
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: W7T228_9STRA (DNA damage inducible protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T228_9STRA) HSP 1 Score: 219 bits (558), Expect = 3.160e-65 Identity = 133/283 (47.00%), Postives = 160/283 (56.54%), Query Frame = 1
Query: 1 MRAQNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALLLAQ 849
M + Q KI MI+++ + +N +AMEE PE F V MLY+D +N +KAFVDSGAQSTIMSA CA +CGL RL+D RF G A+GVGT KILGRIHM +K+G + PC+FT+LE DVDFLFGLDMLKRH C IDL+ N + LGSAG VPFL+EKDLPA R + E + G G G G AG E QL+G+GFSR+QA L T GNVEEAAALLLA+
Sbjct: 194 MDPEAQRKIESMIQRENVHRNMELAMEEMPEAFGSVVMLYVDVHVNGHPIKAFVDSGAQSTIMSAACALRCGLSRLIDTRFAGIAKGVGTSKILGRIHMHTLKVGEAHLPCTFTVLENDDVDFLFGLDMLKRHQCCIDLRRNLLVLGSAGKEVPFLAEKDLPARARGHQEEGAEK--------------------------------------------------GGEGGREGEGSVGEGREAGLEG---QLIGLGFSREQARSGLRRTEGNVEEAAALLLAE 423
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A7S0QY69_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QY69_9CHLO) HSP 1 Score: 218 bits (556), Expect = 5.660e-65 Identity = 127/275 (46.18%), Postives = 166/275 (60.36%), Query Frame = 1
Query: 16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
Q KIA+MIEQ I++NY A+E PE F RV MLY+D E+N V +KAF+DSGAQSTIMS CA+KC +MRLVD RF G A+GVGT KI+GR+H +K+G H+ P + T+LE+ D++FLFGLD+LKRH C IDLK N + +GS G VPFL E DLP +R AE + +G TSA+ P++ +V AP + + +E KV L G+GFSRQQA L +TGGNV+ AA++L
Sbjct: 173 QRKIAEMIEQGNINENYESALEHTPEAFGRVQMLYVDMEVNGVPLKAFIDSGAQSTIMSVQCAKKCNIMRLVDTRFAGIAKGVGTSKIIGRVHQTPLKVGGHHLPAAITVLESGDMEFLFGLDLLKRHQCCIDLKDNVLRIGSTGVAVPFLGEGDLPIHLR-------GEFGDAEPESSTPSGATTSAAP---PTASXXXXXXXXXXXXXXXESAVTPAPVAAQQVV------------DEGKVASLTGLGFSRQQALAALEATGGNVDLAASML 425
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A388JZB8_CHABU (UBA domain-containing protein (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JZB8_CHABU) HSP 1 Score: 207 bits (528), Expect = 4.250e-62 Identity = 98/167 (58.68%), Postives = 128/167 (76.65%), Query Frame = 1
Query: 16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMED 516
Q KI ++I Q ID+N A+E PE F RV MLY+D E+N V +KAFVDSGAQSTIMS TCAE+CG+ RL+D+RF G A+GVGTG+I+GR+H+A +K+G +Y+PCSFTI++ DV+FLFGLDML++H C IDLK+N + +G VPFL EKDLP MR ++ D
Sbjct: 52 QRKIEEVIRQKQIDENMEAAIEHNPEAFGRVVMLYVDAEVNRVPLKAFVDSGAQSTIMSLTCAERCGIARLMDKRFSGIAKGVGTGRIMGRVHVAPLKLGNNYYPCSFTIIDQPDVEFLFGLDMLRKHQCQIDLKANVLRVGGGEVEVPFLQEKDLPPHMRGIEVSD 218
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A0K9QRP0_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QRP0_SPIOL) HSP 1 Score: 210 bits (534), Expect = 7.540e-62 Identity = 131/275 (47.64%), Postives = 171/275 (62.18%), Query Frame = 1
Query: 16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
Q KI I Q ID+N+A A+E PE FARV MLY+D E+N V +KAFVDSGAQSTI+S CAE+CGL+RL+D R+ G ARGVG +ILGRIH A IKIG ++PCSFT+L++ +++FLFGLDML++H C+IDLK N + LG +VPFL EKD+P+ + ED K+ AS GAP S + D+ ++VP+ P+GS S G AG G + E+KV +LV +GF R Q L GN E+AA L
Sbjct: 166 QKKIEASIRQKGIDENWAAAIEHNPEAFARVVMLYVDMEVNGVPIKAFVDSGAQSTIISKRCAERCGLLRLLDERYKGIARGVGQMEILGRIHAAHIKIGNVFYPCSFTVLDSDNMEFLFGLDMLRKHQCIIDLKDNTLKLGGGEVSVPFLPEKDIPSHFLD---EDSFSKQ---------------ASGSGAPVSSGIN-DI----------RNVPSLPTGSQSSGG-AGGNPGQSSEFEAKVSKLVELGFERSQVVQALQLFNGNEEQAAGFL 410
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A1S3BI81_CUCME (DNA damage-inducible protein 1 isoform X1 n=20 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3BI81_CUCME) HSP 1 Score: 209 bits (533), Expect = 9.110e-62 Identity = 129/276 (46.74%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTA-GPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
Q KI I Q ID+N+A A+E PE FARV MLY+D E+N V +KAFVDSGAQSTI+S +CAEKCGL+RL+D+R+ G ARGVG +ILGRIH+A IKIG+ ++PCSF +L++ ++DFLFGLDML++H C+IDLK N + +G +VPFL EKD+P S+ + +R +++ AS+ GAP VASS PT +++ AA + + ++ G A GP E+KV +LV +GF R+ L GN E+AA L
Sbjct: 164 QKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIARGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSL-------FDEERLSKE-----------ASSSGAP--------VASS--PTENSRNATAARATAGNVGGAAQGPEF------EAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFL 405
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A803LQD6_CHEQI (Uncharacterized protein n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LQD6_CHEQI) HSP 1 Score: 209 bits (531), Expect = 1.860e-61 Identity = 125/275 (45.45%), Postives = 169/275 (61.45%), Query Frame = 1
Query: 16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
Q KI I Q ID+N+A A+E PE FARV MLY+D E+N V +KAFVDSGAQSTI+S CAE+CGL+RL+D R+ G ARGVG +ILGRIH+A IKIG ++PCSFT+L++ +++FLFGLDML++H C+IDLK N + +G +VPFL EKD+P+ + E+ K+++ P ++G S D + +P+AP GS S +G AG G E+KV +LV +GF R L GN E+AA L
Sbjct: 161 QRKIEASIRQKGIDENWAAAIEHNPEAFARVVMLYVDMEVNGVPIKAFVDSGAQSTIISKRCAERCGLLRLLDERYKGIARGVGQMEILGRIHVAHIKIGKVFYPCSFTVLDSDNMEFLFGLDMLRKHQCIIDLKENALKVGGGEVSVPFLPEKDIPSHFLD---EESFAKQASSSGAPVSSG----------------SKDT----------RDIPSAPIGSQS-SGAAGGNPAQGPDFEAKVAKLVELGFPRNDVIQALQLFNGNEEQAAGFL 405
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A2S7Q9P1_9HELO (DNA damage-inducible protein 1 n=3 Tax=unclassified Rutstroemia TaxID=2684950 RepID=A0A2S7Q9P1_9HELO) HSP 1 Score: 209 bits (531), Expect = 3.750e-61 Identity = 136/275 (49.45%), Postives = 167/275 (60.73%), Query Frame = 1
Query: 16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
Q +IA+MI ++ + +N A+E PEVF RV MLYID E+N +VKAFVDSGAQ+TIMS CAE CG+MRLVD+RF G ARGVGT ILGR+H AQIKIG + PCSFT++E DVD L GLDMLKRH IDL + + + G V FL E D+P +M E + E+ + GG T + GA S+ A A SSQ P A A + PAA G E K+ QLV +GFSRQ+A LA+ GGNVE AA LL
Sbjct: 172 QMRIAEMIREERVQENLQNAIEHNPEVFGRVHMLYIDVEVNGHKVKAFVDSGAQATIMSPKCAEDCGIMRLVDKRFAGIARGVGTAAILGRVHSAQIKIGTLFLPCSFTVMEGKDVDLLLGLDMLKRHQACIDLSRDKLVI--QGMEVGFLGEADIPKNMEEERAEEPQLE---------GPGGTTIGAKSGAVSAPQAGAGAPSSQTPQA-ASANPAAGEGVXXXXXXXXXXXXXNFPNE-KIDQLVALGFSRQEAASALAACGGNVEYAAGLL 433
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A8H8UCJ4_9HELO (DNA damage-inducible protein 1 n=3 Tax=Lachnellula TaxID=47830 RepID=A0A8H8UCJ4_9HELO) HSP 1 Score: 209 bits (531), Expect = 4.450e-61 Identity = 128/275 (46.55%), Postives = 162/275 (58.91%), Query Frame = 1
Query: 16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
Q +IA+MI ++ + +N A+E PEVF RV MLYID E+N +VKAFVDSGAQ+TIMS +CAE CG+MRLVD+RF G ARGVGT ILGR+H AQIKIGA + PCSFT++E DVD L GLDMLKRH IDL + + + G V FL E D+P +M E + E+ + A +G + ST APS P + AAP +S + QLV +GFSR++A LA+ GGNVE AA LL
Sbjct: 193 QTRIAEMIREERVQENLQNAIEHNPEVFGRVHMLYIDVEVNGHKVKAFVDSGAQATIMSPSCAEACGIMRLVDKRFAGVARGVGTAAILGRVHSAQIKIGALFLPCSFTVMEGKDVDLLLGLDMLKRHQACIDLSKDKLVI--QGVEVSFLGEADIPKNMEEERAEEPKVEGPGGTMIGARSGAVSGPSTQAAPSPS-----------PAPPTQQTSAAPQQASF--------------PPESIDQLVALGFSREEAVNALAACGGNVEYAAGLL 440 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18979.4741.1 >prot_H-paniculata_contig18979.4741.1 ID=prot_H-paniculata_contig18979.4741.1|Name=mRNA_H-paniculata_contig18979.4741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp MRAQNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVback to top mRNA from alignment at H-paniculata_contig18979:382..4314- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18979.4741.1 ID=mRNA_H-paniculata_contig18979.4741.1|Name=mRNA_H-paniculata_contig18979.4741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3933bp|location=Sequence derived from alignment at H-paniculata_contig18979:382..4314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18979:382..4314- >mRNA_H-paniculata_contig18979.4741.1 ID=mRNA_H-paniculata_contig18979.4741.1|Name=mRNA_H-paniculata_contig18979.4741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig18979:382..4314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |