mRNA_H-paniculata_contig18979.4741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18979.4741.1
Unique NamemRNA_H-paniculata_contig18979.4741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: D7FZE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE4_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 1.180e-107
Identity = 195/297 (65.66%), Postives = 217/297 (73.06%), Query Frame = 1
Query:   10 QNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPT------------AVAKSVPAAPSGSSSIAGTAGPGV--GGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALLLAQMDI 858
            +NQAKI KMI+Q+AIDQNY MAMEEAPEVFARVSMLYIDTEIN VRVKAFVDSGAQSTIMSA CAEKCGLMRLVD RFHGEARGVGTGKILGRIHMAQIKIG H+FPCSFTIL+TSDVDFLFGLDMLKRHLCVIDLKS+ + LGSAG +VPFLSEKDLP+S RET+ EDL  K+      PAAA  + S+ ++                APT            A+    PA           A       GGA EE+KV QL  MGFSR+QAEG L+STGG+ E+AA LLLAQMD+
Sbjct:  165 ENQAKIQKMIDQEAIDQNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKK------PAAAESSGSSXSV--------------ETAPTGXXXXXXXXXXXAMDTETPATXXXXXXXXXPAXXXXXXAGGA-EEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQMDL 440          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A6H5L2G1_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G1_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 1.290e-94
Identity = 148/176 (84.09%), Postives = 160/176 (90.91%), Query Frame = 1
Query:   10 QNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSA 537
            +NQAKI KMIEQ+AID NY MAMEEAPEVFARVSMLYIDTEIN VRVKAFVDSGAQSTIMSA CAEKCGLMRLVD RFHGEARGVGTGKILGRIHMAQIKIG H+FPCSFTIL+TSDVDFLFGLDMLKRHLCVIDLKS+ + LGSAG +VPFLSEKDLP+S RET+    +R++ A
Sbjct:  165 ENQAKIQKMIEQEAIDHNYHMAMEEAPEVFARVSMLYIDTEINGVRVKAFVDSGAQSTIMSAACAEKCGLMRLVDTRFHGEARGVGTGKILGRIHMAQIKIGDHHFPCSFTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQASGGSREQKA 340          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: W7T228_9STRA (DNA damage inducible protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T228_9STRA)

HSP 1 Score: 219 bits (558), Expect = 3.160e-65
Identity = 133/283 (47.00%), Postives = 160/283 (56.54%), Query Frame = 1
Query:    1 MRAQNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALLLAQ 849
            M  + Q KI  MI+++ + +N  +AMEE PE F  V MLY+D  +N   +KAFVDSGAQSTIMSA CA +CGL RL+D RF G A+GVGT KILGRIHM  +K+G  + PC+FT+LE  DVDFLFGLDMLKRH C IDL+ N + LGSAG  VPFL+EKDLPA  R  + E   +                                                   G     G    G G  AG E    QL+G+GFSR+QA   L  T GNVEEAAALLLA+
Sbjct:  194 MDPEAQRKIESMIQRENVHRNMELAMEEMPEAFGSVVMLYVDVHVNGHPIKAFVDSGAQSTIMSAACALRCGLSRLIDTRFAGIAKGVGTSKILGRIHMHTLKVGEAHLPCTFTVLENDDVDFLFGLDMLKRHQCCIDLRRNLLVLGSAGKEVPFLAEKDLPARARGHQEEGAEK--------------------------------------------------GGEGGREGEGSVGEGREAGLEG---QLIGLGFSREQARSGLRRTEGNVEEAAALLLAE 423          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A7S0QY69_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QY69_9CHLO)

HSP 1 Score: 218 bits (556), Expect = 5.660e-65
Identity = 127/275 (46.18%), Postives = 166/275 (60.36%), Query Frame = 1
Query:   16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
            Q KIA+MIEQ  I++NY  A+E  PE F RV MLY+D E+N V +KAF+DSGAQSTIMS  CA+KC +MRLVD RF G A+GVGT KI+GR+H   +K+G H+ P + T+LE+ D++FLFGLD+LKRH C IDLK N + +GS G  VPFL E DLP  +R            AE  +   +G  TSA+    P++                  +V  AP  +  +             +E KV  L G+GFSRQQA   L +TGGNV+ AA++L
Sbjct:  173 QRKIAEMIEQGNINENYESALEHTPEAFGRVQMLYVDMEVNGVPLKAFIDSGAQSTIMSVQCAKKCNIMRLVDTRFAGIAKGVGTSKIIGRVHQTPLKVGGHHLPAAITVLESGDMEFLFGLDLLKRHQCCIDLKDNVLRIGSTGVAVPFLGEGDLPIHLR-------GEFGDAEPESSTPSGATTSAAP---PTASXXXXXXXXXXXXXXXESAVTPAPVAAQQVV------------DEGKVASLTGLGFSRQQALAALEATGGNVDLAASML 425          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A388JZB8_CHABU (UBA domain-containing protein (Fragment) n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JZB8_CHABU)

HSP 1 Score: 207 bits (528), Expect = 4.250e-62
Identity = 98/167 (58.68%), Postives = 128/167 (76.65%), Query Frame = 1
Query:   16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMED 516
            Q KI ++I Q  ID+N   A+E  PE F RV MLY+D E+N V +KAFVDSGAQSTIMS TCAE+CG+ RL+D+RF G A+GVGTG+I+GR+H+A +K+G +Y+PCSFTI++  DV+FLFGLDML++H C IDLK+N + +G     VPFL EKDLP  MR  ++ D
Sbjct:   52 QRKIEEVIRQKQIDENMEAAIEHNPEAFGRVVMLYVDAEVNRVPLKAFVDSGAQSTIMSLTCAERCGIARLMDKRFSGIAKGVGTGRIMGRVHVAPLKLGNNYYPCSFTIIDQPDVEFLFGLDMLRKHQCQIDLKANVLRVGGGEVEVPFLQEKDLPPHMRGIEVSD 218          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A0K9QRP0_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QRP0_SPIOL)

HSP 1 Score: 210 bits (534), Expect = 7.540e-62
Identity = 131/275 (47.64%), Postives = 171/275 (62.18%), Query Frame = 1
Query:   16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
            Q KI   I Q  ID+N+A A+E  PE FARV MLY+D E+N V +KAFVDSGAQSTI+S  CAE+CGL+RL+D R+ G ARGVG  +ILGRIH A IKIG  ++PCSFT+L++ +++FLFGLDML++H C+IDLK N + LG    +VPFL EKD+P+   +   ED   K+               AS  GAP S   + D+          ++VP+ P+GS S  G AG   G  +  E+KV +LV +GF R Q    L    GN E+AA  L
Sbjct:  166 QKKIEASIRQKGIDENWAAAIEHNPEAFARVVMLYVDMEVNGVPIKAFVDSGAQSTIISKRCAERCGLLRLLDERYKGIARGVGQMEILGRIHAAHIKIGNVFYPCSFTVLDSDNMEFLFGLDMLRKHQCIIDLKDNTLKLGGGEVSVPFLPEKDIPSHFLD---EDSFSKQ---------------ASGSGAPVSSGIN-DI----------RNVPSLPTGSQSSGG-AGGNPGQSSEFEAKVSKLVELGFERSQVVQALQLFNGNEEQAAGFL 410          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A1S3BI81_CUCME (DNA damage-inducible protein 1 isoform X1 n=20 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3BI81_CUCME)

HSP 1 Score: 209 bits (533), Expect = 9.110e-62
Identity = 129/276 (46.74%), Postives = 177/276 (64.13%), Query Frame = 1
Query:   16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTA-GPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
            Q KI   I Q  ID+N+A A+E  PE FARV MLY+D E+N V +KAFVDSGAQSTI+S +CAEKCGL+RL+D+R+ G ARGVG  +ILGRIH+A IKIG+ ++PCSF +L++ ++DFLFGLDML++H C+IDLK N + +G    +VPFL EKD+P S+        + +R +++           AS+ GAP        VASS  PT  +++  AA + + ++ G A GP        E+KV +LV +GF R+     L    GN E+AA  L
Sbjct:  164 QKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIARGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSL-------FDEERLSKE-----------ASSSGAP--------VASS--PTENSRNATAARATAGNVGGAAQGPEF------EAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFL 405          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A803LQD6_CHEQI (Uncharacterized protein n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LQD6_CHEQI)

HSP 1 Score: 209 bits (531), Expect = 1.860e-61
Identity = 125/275 (45.45%), Postives = 169/275 (61.45%), Query Frame = 1
Query:   16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
            Q KI   I Q  ID+N+A A+E  PE FARV MLY+D E+N V +KAFVDSGAQSTI+S  CAE+CGL+RL+D R+ G ARGVG  +ILGRIH+A IKIG  ++PCSFT+L++ +++FLFGLDML++H C+IDLK N + +G    +VPFL EKD+P+   +   E+   K+++    P ++G                S D           + +P+AP GS S +G AG     G   E+KV +LV +GF R      L    GN E+AA  L
Sbjct:  161 QRKIEASIRQKGIDENWAAAIEHNPEAFARVVMLYVDMEVNGVPIKAFVDSGAQSTIISKRCAERCGLLRLLDERYKGIARGVGQMEILGRIHVAHIKIGKVFYPCSFTVLDSDNMEFLFGLDMLRKHQCIIDLKENALKVGGGEVSVPFLPEKDIPSHFLD---EESFAKQASSSGAPVSSG----------------SKDT----------RDIPSAPIGSQS-SGAAGGNPAQGPDFEAKVAKLVELGFPRNDVIQALQLFNGNEEQAAGFL 405          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A2S7Q9P1_9HELO (DNA damage-inducible protein 1 n=3 Tax=unclassified Rutstroemia TaxID=2684950 RepID=A0A2S7Q9P1_9HELO)

HSP 1 Score: 209 bits (531), Expect = 3.750e-61
Identity = 136/275 (49.45%), Postives = 167/275 (60.73%), Query Frame = 1
Query:   16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
            Q +IA+MI ++ + +N   A+E  PEVF RV MLYID E+N  +VKAFVDSGAQ+TIMS  CAE CG+MRLVD+RF G ARGVGT  ILGR+H AQIKIG  + PCSFT++E  DVD L GLDMLKRH   IDL  + + +   G  V FL E D+P +M E + E+   +           GG T  +  GA S+  A A   SSQ P A A + PAA  G                  E K+ QLV +GFSRQ+A   LA+ GGNVE AA LL
Sbjct:  172 QMRIAEMIREERVQENLQNAIEHNPEVFGRVHMLYIDVEVNGHKVKAFVDSGAQATIMSPKCAEDCGIMRLVDKRFAGIARGVGTAAILGRVHSAQIKIGTLFLPCSFTVMEGKDVDLLLGLDMLKRHQACIDLSRDKLVI--QGMEVGFLGEADIPKNMEEERAEEPQLE---------GPGGTTIGAKSGAVSAPQAGAGAPSSQTPQA-ASANPAAGEGVXXXXXXXXXXXXXNFPNE-KIDQLVALGFSRQEAASALAACGGNVEYAAGLL 433          
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Match: A0A8H8UCJ4_9HELO (DNA damage-inducible protein 1 n=3 Tax=Lachnellula TaxID=47830 RepID=A0A8H8UCJ4_9HELO)

HSP 1 Score: 209 bits (531), Expect = 4.450e-61
Identity = 128/275 (46.55%), Postives = 162/275 (58.91%), Query Frame = 1
Query:   16 QAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRVKAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMAQIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAGTTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPSSEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVLQLVGMGFSRQQAEGVLASTGGNVEEAAALL 840
            Q +IA+MI ++ + +N   A+E  PEVF RV MLYID E+N  +VKAFVDSGAQ+TIMS +CAE CG+MRLVD+RF G ARGVGT  ILGR+H AQIKIGA + PCSFT++E  DVD L GLDMLKRH   IDL  + + +   G  V FL E D+P +M E + E+   +        A +G  +  ST  APS             P    +   AAP  +S                   + QLV +GFSR++A   LA+ GGNVE AA LL
Sbjct:  193 QTRIAEMIREERVQENLQNAIEHNPEVFGRVHMLYIDVEVNGHKVKAFVDSGAQATIMSPSCAEACGIMRLVDKRFAGVARGVGTAAILGRVHSAQIKIGALFLPCSFTVMEGKDVDLLLGLDMLKRHQACIDLSKDKLVI--QGVEVSFLGEADIPKNMEEERAEEPKVEGPGGTMIGARSGAVSGPSTQAAPSPS-----------PAPPTQQTSAAPQQASF--------------PPESIDQLVALGFSREEAVNALAACGGNVEYAAGLL 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18979.4741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZE4_ECTSI1.180e-10765.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2G1_9PHAE1.290e-9484.09Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
W7T228_9STRA3.160e-6547.00DNA damage inducible protein n=2 Tax=Monodopsidace... [more]
A0A7S0QY69_9CHLO5.660e-6546.18Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A388JZB8_CHABU4.250e-6258.68UBA domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A0K9QRP0_SPIOL7.540e-6247.64Uncharacterized protein n=1 Tax=Spinacia oleracea ... [more]
A0A1S3BI81_CUCME9.110e-6246.74DNA damage-inducible protein 1 isoform X1 n=20 Tax... [more]
A0A803LQD6_CHEQI1.860e-6145.45Uncharacterized protein n=3 Tax=Chenopodium quinoa... [more]
A0A2S7Q9P1_9HELO3.750e-6149.45DNA damage-inducible protein 1 n=3 Tax=unclassifie... [more]
A0A8H8UCJ4_9HELO4.450e-6146.55DNA damage-inducible protein 1 n=3 Tax=Lachnellula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18979contigH-paniculata_contig18979:382..4314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.8
Seed ortholog evalue1.6e-88
Seed eggNOG ortholog2880.D7FZE4
KEGG koko:K09537,ko:K11885
Hectar predicted targeting categoryother localisation
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG0012@1,KOG0012@2759
Ec32 ortholog descriptionUbiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
Ec32 orthologEc-27_001500.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051,ko03110
Exons5
Model size861
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18979.4741.1prot_H-paniculata_contig18979.4741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18979 382..4314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929455.281479-CDS-H-paniculata_contig18979:381..7351622929455.281479-CDS-H-paniculata_contig18979:381..735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 382..735 -
1691480868.8190393-CDS-H-paniculata_contig18979:381..7351691480868.8190393-CDS-H-paniculata_contig18979:381..735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 382..735 -
1622929455.2925105-CDS-H-paniculata_contig18979:1562..17181622929455.2925105-CDS-H-paniculata_contig18979:1562..1718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 1563..1718 -
1691480868.8288243-CDS-H-paniculata_contig18979:1562..17181691480868.8288243-CDS-H-paniculata_contig18979:1562..1718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 1563..1718 -
1622929455.306556-CDS-H-paniculata_contig18979:2578..26701622929455.306556-CDS-H-paniculata_contig18979:2578..2670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 2579..2670 -
1691480868.8366725-CDS-H-paniculata_contig18979:2578..26701691480868.8366725-CDS-H-paniculata_contig18979:2578..2670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 2579..2670 -
1622929455.322589-CDS-H-paniculata_contig18979:3688..38151622929455.322589-CDS-H-paniculata_contig18979:3688..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 3689..3815 -
1691480868.8525105-CDS-H-paniculata_contig18979:3688..38151691480868.8525105-CDS-H-paniculata_contig18979:3688..3815Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 3689..3815 -
1622929455.3394055-CDS-H-paniculata_contig18979:4182..43141622929455.3394055-CDS-H-paniculata_contig18979:4182..4314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 4183..4314 -
1691480868.8653815-CDS-H-paniculata_contig18979:4182..43141691480868.8653815-CDS-H-paniculata_contig18979:4182..4314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18979 4183..4314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18979.4741.1

>prot_H-paniculata_contig18979.4741.1 ID=prot_H-paniculata_contig18979.4741.1|Name=mRNA_H-paniculata_contig18979.4741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp
MRAQNQAKIAKMIEQDAIDQNYAMAMEEAPEVFARVSMLYIDTEINSVRV
KAFVDSGAQSTIMSATCAEKCGLMRLVDRRFHGEARGVGTGKILGRIHMA
QIKIGAHYFPCSFTILETSDVDFLFGLDMLKRHLCVIDLKSNHVALGSAG
TTVPFLSEKDLPASMRETKMEDLNRKRSAEDTTPAAAGGATSASTIGAPS
SEVASADVASSQAPTAVAKSVPAAPSGSSSIAGTAGPGVGGGAGEESKVL
QLVGMGFSRQQAEGVLASTGGNVEEAAALLLAQMDI*
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mRNA from alignment at H-paniculata_contig18979:382..4314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18979.4741.1 ID=mRNA_H-paniculata_contig18979.4741.1|Name=mRNA_H-paniculata_contig18979.4741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3933bp|location=Sequence derived from alignment at H-paniculata_contig18979:382..4314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGCCCAGAATCAAGCGAAGATAGCGAAAATGATCGAACAAGATGC GATCGATCAAAACTATGCCATGGCTATGGAAGAAGCGCCTGAGGTGTTCG CTCGCGTTAGCATGCTTTACATCGATACGGAGGTGAGATAAATTAAGCGT TTAGGAACGTAGATATCAAAATGGCTATCGCCTACACAGTATTTATTTAC GACCAGTGGGGAACAATGGCGAAAACCTGGACAAAGTAATGTATCAGTTC TCCGTAGCTAGTTAGTGTTCTCAGGTAGTCTGCCAGGCGCCACTCAGTAG TTGTGACTCCCATTTTCCCTGACTGGCGGCTGTCCTTTACAGAATGTAAG GCATACTGGAGCCCCCCCCACCCCACCCCTTGTTTTTTTGTGATTGTGGA AGGGAAACAAAATCTATACGTTCACCGTGTCAAGAGACGATGCCTCTGTC TTTTATGTTGTGTTGTATTGTGTTCTGTTTGTGCGGGCGGGGAAAACAGA TCAACAGTGTTCGTGTGAAGGCGTTCGTGGACAGCGGTGCGCAGAGCACC ATCATGTCGGCAACGTGCGCGGAGAAATGCGGGTTGATGCGCCTCGTGGA CCGTCGCTTTCATGGGGAGGCAAGAGGTCGGTGTCTGGTTTGTTTAAATG GTACTACTATTATTATTAGTATTAATATTATTAATATTAGTATTAGTAGT ATTAATATTAGTATTAGTAGTATTAATATTAGTATTAGTAGTATTAATAT TATTATTAGTATTAGTATTAATATTAATATCAATACTGTGGAGAGCACGT TACAGACGTTCCTGGGGTTCCTGAAAACCAGACTCCTACACAACGACCAA TGGCATTGTGTCCCTCTCTCGGAATAGCTCTCTAGCTGTGTCCGACCCCG GATGGCTAGTTCATCTTCAACAGAACAAAGCCGAAGTTCTTGCTCCGCAC TACATTCCAAGACTCGGAACCAACCCCCATAGAGCAGACGATGTCTCCTC GAGAGCCGGTCTTCCCCGTGACCATTGTGTTCTCAAAAATATTAACAACT CCCATGTCTTTGGGTTGTGGGACTAGCGAGGGTGATTAGATAGGGTCCGG GGATAGAAAGAGTTGACCACTTCTGGGTGAAGACTTGTGTGTCTATACGC GTGTCCATGAAGATGGCGATTATCTCGATGTGAGTAACCTGAATATGGAG TGTGCCTGCATGCGAACGCGAGCGAGCCATGGCGAGCGCAGCGAGTCCGT ATGGATGGATTCGACGTATGGCGTCATCGTCGACGTAGTTACCGCCACTG GGGTAGCCGTGATCCTTCTACTGGTAATGATAATGGTGCTGTAAAGAGCA CCATTCGCTCTGGTTTCGTCTGAATTAATGACATATGCCTGATATCAAAA CTACCACTTACGTTCATCCCTCCCTCAGTTTTGACTATACTCGCCTGCGA CTATTTTGGAATGTTGTTTGCAGGAGTGGTTGGCTACAGTTATACTCCAG TACAAGAAAGCGCTCAACTCTTGATATGGACTGTTAACTGAAAGCCTTCT TTTTTAATCGAATTTGAAATCTTTAATTTTTGTTTTTTTTGTAAAAACTC CCTTTTATTGTATGCCTATTTTGATTCTTTTTTGTTGTTTCCAGGCGTTG GAACCGGGAAGATTTTGGGGAGGATTCACATGGCCCAGATTAAGATAGGA GCGCATTACTTCCCCTGCAGCTTCACTATTCTAGAGGTTTGTGCACAATT ACTGTAAAAGGTACAAAAATGCGCCAGACACAAAAGAGTCGTGAAGATCA AAAATACAAATGTTAATCGTGTCAATGGTCCCCGGCCCGCGGTCGCATCT ATCATGTCACTGCAAGCGCGTGCCATATTTTAGGCTTGGGATATCATGAC CGAAAAGCTGGGATTGACGGAAGGCTAATATGATACCGCGTTTTTCGTTT TGCTGTCTAAAATATGGCGTGAGTGCAGACGATGGTGGCGGTAGAGAACG TTGGTGTTTTAGCGAAGATGTTCATACGACCCTTCATGTCAAAACAACAC CTTCCAATTTCAAGCCACGCTATTCTCTCTCTCTCGTTCCTTCTTGTGAA GCCCCCTCTGTTGTTTTTTTTCTTTTTCTCTCTCTCTCGCATAGTTGGCA TGTTTTCCCCCCCCTCAATATTTGTTATTAGAAGGAAGACAGAGCGCTTT CTTCTCCTAAATGTAGACATACTTCGTCGTTAGACCACTTCTTATCATAG CGTTTTTTGCCGATAGTTTGTTTTTCCCTAAAGTGCGCTCGCTTCGGCGG CACGAACCTCGCCGAGTTTTGGACCAGAATTATTGGGATTTATGGAAAAT TGGTCCCGTGCGTGTGTAGAGGACATGTTAATCGTCCACTTGTTGCAGCT CCCAAGCCGCGAGGCTGCCACTCACTTTTGTCATTTTCGCAAGCGGAAAA TGTGGCGAGAGTGGCAACCTCACGGCTTGGGAGTGCGACCATTGCTGCGA AACTTGTGGGAGGTGGAGCAATTTGTTCTTTTACGCCTCGATCAAATTCG TCTTTCGTGTGTCGTCCGTTCGTAACATGATACATTTTACGCTCAGACGA GCGACGTGGACTTCTTGTTTGGGCTGGACATGTTGAAACGGCATCTATGC GTCATAGATCTTAAGAGCAACCATGTGGCGCTGGGCAGCGCGGGGACCAC GGTCCCGTTTTTGTCCGAGAAGGACCTTCCAGCTTCTATGAGGGAAACGA AGGTGACACATGGGATAAGCAACCGCGCCGCCTGGGGGTGCCACGACCTA GTACTCAATCTTGAGCTTATCGAGTCGTAGCGACATTCGTCGGGTACTCA GAAGCAAGGCGTACCCGCAGATTCTACAACAACCATATTTAGTCTGGTTT GTCAGAGTATAGCCAGAAGGTGTTCAAAGTGCTCAAGAGCAATTTTTCAT CCCCCCCGAACAAATACGAATACTTGCAACTGGTTTTCGCAAAACACTGA AAGTGTTCGCCTGGGATTCAGAATGAGCGGGCTCATAGAATAATGTACCC ACCGCTGGCCATTCGATTTACGAGTATTATCATCAGTCGTGGATGGTCTT GGGCACATGGTTTATACGAGCTCGTTCTGAAACCTAGGCGAATATTTTCA GTTTTTGTGAAAACCATTTGCTAGTGTTATTATTTGTCCGGGGGGTGCAA TATTTGACACCAACATTAGGGAGCGTAGTAAGGTGTCATCTATAATAATT CATTATCCGACCGCCAAGATATCACCGCGACTCGCACACACACTCTTTTT CGTTCGGAGGCTGAGCGGTGCGGCGGTGTGGCTAAAGTTGTCACTCACAA AAGATGGAAGAGAAGTACGTGTCCAACCTTGCGTTCACAGCCGTGAAGCC AGCCGAAAACGTTCAACGTTTTCACGCTATCAATTTAGGGCTGGTCATAA TGAGTCATACCCATCACACATTCACACCTTTTCTTGTCGCATGGACATTA CTAACACGCCCCCCTACCCTCCGCCACCCACACCCCCATACGCCCCCCCC TCGCCGATTTCGACCCCGTGCTGAGGCAGATGGAAGATCTCAACCGTAAA CGTTCAGCAGAAGATACCACCCCCGCCGCCGCCGGGGGCGCAACCTCCGC GTCTACCATAGGGGCGCCATCGTCAGAAGTGGCCAGTGCGGATGTTGCTT CCTCACAAGCTCCCACGGCGGTAGCAAAGTCCGTACCTGCCGCGCCGAGT GGAAGCAGTAGCATTGCAGGGACGGCGGGTCCGGGAGTAGGGGGGGGGGC GGGAGAGGAGAGCAAGGTGCTGCAGCTGGTGGGCATGGGGTTCTCGCGGC AGCAGGCGGAAGGGGTGCTGGCGAGCACGGGGGGAAACGTCGAGGAAGCG GCGGCTCTTCTTCTAGCGCAGATGGACATTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig18979:382..4314-

>mRNA_H-paniculata_contig18979.4741.1 ID=mRNA_H-paniculata_contig18979.4741.1|Name=mRNA_H-paniculata_contig18979.4741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig18979:382..4314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCGCCCAGAATCAAGCGAAGATAGCGAAAATGATCGAACAAGATGC
GATCGATCAAAACTATGCCATGGCTATGGAAGAAGCGCCTGAGGTGTTCG
CTCGCGTTAGCATGCTTTACATCGATACGGAGATGCGCGCCCAGAATCAA
GCGAAGATAGCGAAAATGATCGAACAAGATGCGATCGATCAAAACTATGC
CATGGCTATGGAAGAAGCGCCTGAGGTGTTCGCTCGCGTTAGCATGCTTT
ACATCGATACGGAGATCAACAGTGTTCGTGTGAAGGCGTTCGTGGACAGC
GGTGCGCAGAGCACCATCATGTCGGCAACGTGCGCGGAGAAATGCGGGTT
GATGCGCCTCGTGGACCGTCGCTTTCATGGGGAGGCAAGAGATCAACAGT
GTTCGTGTGAAGGCGTTCGTGGACAGCGGTGCGCAGAGCACCATCATGTC
GGCAACGTGCGCGGAGAAATGCGGGTTGATGCGCCTCGTGGACCGTCGCT
TTCATGGGGAGGCAAGAGGCGTTGGAACCGGGAAGATTTTGGGGAGGATT
CACATGGCCCAGATTAAGATAGGAGCGCATTACTTCCCCTGCAGCTTCAC
TATTCTAGAGGCGTTGGAACCGGGAAGATTTTGGGGAGGATTCACATGGC
CCAGATTAAGATAGGAGCGCATTACTTCCCCTGCAGCTTCACTATTCTAG
AGACGAGCGACGTGGACTTCTTGTTTGGGCTGGACATGTTGAAACGGCAT
CTATGCGTCATAGATCTTAAGAGCAACCATGTGGCGCTGGGCAGCGCGGG
GACCACGGTCCCGTTTTTGTCCGAGAAGGACCTTCCAGCTTCTATGAGGG
AAACGAAGACGAGCGACGTGGACTTCTTGTTTGGGCTGGACATGTTGAAA
CGGCATCTATGCGTCATAGATCTTAAGAGCAACCATGTGGCGCTGGGCAG
CGCGGGGACCACGGTCCCGTTTTTGTCCGAGAAGGACCTTCCAGCTTCTA
TGAGGGAAACGAAGATGGAAGATCTCAACCGTAAACGTTCAGCAGAAGAT
ACCACCCCCGCCGCCGCCGGGGGCGCAACCTCCGCGTCTACCATAGGGGC
GCCATCGTCAGAAGTGGCCAGTGCGGATGTTGCTTCCTCACAAGCTCCCA
CGGCGGTAGCAAAGTCCGTACCTGCCGCGCCGAGTGGAAGCAGTAGCATT
GCAGGGACGGCGGGTCCGGGAGTAGGGGGGGGGGCGGGAGAGGAGAGCAA
GGTGCTGCAGCTGGTGGGCATGGGGTTCTCGCGGCAGCAGGCGGAAGGGG
TGCTGGCGAGCACGGGGGGAAACGTCGAGGAAGCGGCGGCTCTTCTTCTA
GCGCAGATGGACATTTAAATGGAAGATCTCAACCGTAAACGTTCAGCAGA
AGATACCACCCCCGCCGCCGCCGGGGGCGCAACCTCCGCGTCTACCATAG
GGGCGCCATCGTCAGAAGTGGCCAGTGCGGATGTTGCTTCCTCACAAGCT
CCCACGGCGGTAGCAAAGTCCGTACCTGCCGCGCCGAGTGGAAGCAGTAG
CATTGCAGGGACGGCGGGTCCGGGAGTAGGGGGGGGGGCGGGAGAGGAGA
GCAAGGTGCTGCAGCTGGTGGGCATGGGGTTCTCGCGGCAGCAGGCGGAA
GGGGTGCTGGCGAGCACGGGGGGAAACGTCGAGGAAGCGGCGGCTCTTCT
TCTAGCGCAGATGGACATTTAA
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