mRNA_H-paniculata_contig18961.4739.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18961.4739.1
Unique NamemRNA_H-paniculata_contig18961.4739.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: D7FKR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR3_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 6.870e-46
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDANAHVVDLS 312
            IL+CQPGDIGHVLRTI +RR HPQHTI+ YIWE Q EVLARHLLLLQ+ QDWELPIRQRAN+FLE+FGNCLVQ+RT  YIAR GK LV +LFS +    ++DLS
Sbjct:   34 ILICQPGDIGHVLRTIGTRRGHPQHTIHLYIWERQIEVLARHLLLLQVAQDWELPIRQRANVFLEIFGNCLVQDRTSRYIARLGKELVGMLFSTEDVPDILDLS 137
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A7S2BEA7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BEA7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.480e-29
Identity = 66/106 (62.26%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQ-HTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFS-LDANAHVVDLS 312
            ILV QPGDI H+L +IS RRR P    ++FY+ E   EVLARHLLLLQI  DWELPIRQRANLFLE FGN L+QERT+ Y+A  G+ LVEL  +   A   +VDLS
Sbjct:   41 ILVAQPGDIRHLLCSISRRRRRPGVGALHFYLIEQPVEVLARHLLLLQIATDWELPIRQRANLFLEAFGNSLLQERTEAYVAALGRELVELACNGQGALEEIVDLS 146
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A5D6Y646_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y646_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.240e-28
Identity = 57/93 (61.29%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHT--INFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELL 273
            +L+  PGDI H+L T++ RRRH  HT  ++ Y++E   EVLARHLLLLQ+ QDWELP+RQR NLFLEVFGN  VQERT  YI  + K LV+LL
Sbjct:   47 VLLVGPGDIRHILATLAHRRRHAAHTRALHIYVFERASEVLARHLLLLQLAQDWELPLRQRCNLFLEVFGNARVQERTSAYIEEKAKELVQLL 139
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A6A5AKG1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AKG1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.860e-28
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDAN-AHVVDLS 312
            +LV  PGDI HVL TI+  RR  +  ++ Y++E  PE LAR LLLLQIV DWE+P+RQR N FLEVFGN LVQ RT +YI  + K LVEL+ +       V+DLS
Sbjct:   53 VLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLEVFGNALVQGRTAEYIEEKAKQLVELVCNESGRLTDVIDLS 157
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A6G0XPS5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPS5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.890e-28
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDAN-AHVVDLS 312
            +LV  PGDI HVL TI+  RR  +  ++ Y++E  PE LAR LLLLQIVQDWE+P+RQR NLFLEVFGN LVQ RT +YI  + K LVEL+ +     A +VDL+
Sbjct:   51 VLVLNPGDIRHVLTTIARSRRWKKRPLHIYVFEKAPESLARALLLLQIVQDWEIPLRQRCNLFLEVFGNALVQGRTSEYIEEKAKQLVELVCNERGRLADLVDLN 155
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A418CJF1_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CJF1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.370e-27
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDAN-AHVVDLS 312
            +LV  PGDI HVL TI+  RR  +  ++ Y++E  PE LAR LLLLQIV DWE+P+RQR N FLEVFGN LVQ RT +YI  + K LVEL+ +     A V+DLS
Sbjct:   36 VLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLEVFGNALVQGRTAEYIEEKAKQLVELVCNESGRLADVIDLS 140
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A3R7ABM3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7ABM3_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.590e-27
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDAN-AHVVDLS 312
            +LV  PGDI HVL TI+  RR  +  ++ Y++E  PE LAR LLLLQ+  DWE+P+RQR N FLEVFGN LVQERT +YI  + K LV L+ +   + A +VDLS
Sbjct:   36 VLVVSPGDIRHVLTTIARSRRWKKRPLHIYLYEKSPECLARALLLLQVANDWEIPLRQRCNTFLEVFGNALVQERTAEYIEEKAKQLVHLVCNESGHLADIVDLS 140
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: W4HAQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAQ6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.960e-27
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDAN-AHVVDLS 312
            +LV  PGDI HVL TI+  RR  +  ++ Y++E  PE LAR LLLLQIV DWE+P+RQR N FLEVFGN LVQ RT +YI  + K LVEL+ +     A V+DLS
Sbjct:   53 VLVLSPGDIRHVLATIARSRRWKKRPLHIYLYEKSPECLARALLLLQIVNDWEVPLRQRCNTFLEVFGNALVQGRTAEYIEEKAKQLVELVCNESGRLADVIDLS 157
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A485KSI8_9STRA (Aste57867_11297 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KSI8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.080e-27
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDAN-AHVVDLS 312
            +LV  PGDI HVL TI+  RR  +  ++ Y++E  PE LAR LLLLQIV DWE+P+RQR N FLEVFGN LVQERT DYI  +   LVEL+ +     A +VDL+
Sbjct:   48 VLVLSPGDIRHVLTTIARSRRWKKRPLHIYLYEKAPESLARSLLLLQIVHDWEIPLRQRCNTFLEVFGNALVQERTCDYIQDKANQLVELVCNERGRLADLVDLT 152
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BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Match: A0A2D4CK38_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CK38_PYTIN)

HSP 1 Score: 108 bits (270), Expect = 3.110e-26
Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    1 ILVCQPGDIGHVLRTISSRRRH-----PQHTINFYIWESQPEVLARHLLLLQIVQDWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELL 273
            +L+  PGDI HVL T++ RRRH     P   ++ Y++E   E LARHLLL  I QDW+LP+RQR N FLEVFGN LVQERT  YI  + K L+ELL
Sbjct:   44 LLLIGPGDIRHVLHTVARRRRHASKDAPLRPLHIYVYERSVETLARHLLLWAIAQDWDLPLRQRCNTFLEVFGNALVQERTASYIEAKSKELMELL 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18961.4739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR3_ECTSI6.870e-4674.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BEA7_9STRA4.480e-2962.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5D6Y646_9STRA1.240e-2861.29Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A5AKG1_9STRA3.860e-2855.24Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6G0XPS5_9STRA6.890e-2857.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A418CJF1_9STRA1.370e-2756.19Uncharacterized protein (Fragment) n=4 Tax=Aphanom... [more]
A0A3R7ABM3_9STRA1.590e-2754.29Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W4HAQ6_9STRA1.960e-2756.19Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485KSI8_9STRA9.080e-2756.19Aste57867_11297 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4CK38_PYTIN3.110e-2656.25Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18961contigH-paniculata_contig18961:3452..4854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue2.1e-38
Seed eggNOG ortholog2880.D7FKR3
Preferred nameDNAAF3
KEGG koko:K19752
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003341,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0034622,GO:0035082,GO:0043933,GO:0044085,GO:0044458,GO:0044782,GO:0048513,GO:0048731,GO:0048856,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0120031,GO:0120036
EggNOG free text desc.motile cilium assembly
EggNOG OGs28KT2@1,2QT97@2759
Ec32 ortholog descriptionDynein assembly factor 3, C-terminal domain
Ec32 orthologEc-21_001820.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size312
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18961.4739.1prot_H-paniculata_contig18961.4739.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18961 3452..4854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929454.9766114-CDS-H-paniculata_contig18961:3451..35351622929454.9766114-CDS-H-paniculata_contig18961:3451..3535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18961 3452..3535 +
1691480868.647107-CDS-H-paniculata_contig18961:3451..35351691480868.647107-CDS-H-paniculata_contig18961:3451..3535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18961 3452..3535 +
1622929454.9969022-CDS-H-paniculata_contig18961:3710..38451622929454.9969022-CDS-H-paniculata_contig18961:3710..3845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18961 3711..3845 +
1691480868.6591341-CDS-H-paniculata_contig18961:3710..38451691480868.6591341-CDS-H-paniculata_contig18961:3710..3845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18961 3711..3845 +
1622929455.012752-CDS-H-paniculata_contig18961:4761..48541622929455.012752-CDS-H-paniculata_contig18961:4761..4854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18961 4762..4854 +
1691480868.668434-CDS-H-paniculata_contig18961:4761..48541691480868.668434-CDS-H-paniculata_contig18961:4761..4854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18961 4762..4854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18961.4739.1

>prot_H-paniculata_contig18961.4739.1 ID=prot_H-paniculata_contig18961.4739.1|Name=mRNA_H-paniculata_contig18961.4739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
ILVCQPGDIGHVLRTISSRRRHPQHTINFYIWESQPEVLARHLLLLQIVQ
DWELPIRQRANLFLEVFGNCLVQERTKDYIARQGKALVELLFSLDANAHV
VDLS
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mRNA from alignment at H-paniculata_contig18961:3452..4854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18961.4739.1 ID=mRNA_H-paniculata_contig18961.4739.1|Name=mRNA_H-paniculata_contig18961.4739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1403bp|location=Sequence derived from alignment at H-paniculata_contig18961:3452..4854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTGGTATGCCAGCCAGGCGATATTGGGCATGTCCTCCGCACCATAAG
TTCACGACGGCGACACCCACAGCACACCATCAACGTAAGCGTGGTTTCTA
AAGTTCGAGTGTAATGAAATACGTAGAGTTGTTGTCTGGGTCACTTGAGA
CCTTCGTGTAGACATTGTCATAATTGCCGCGTGTTAGTCCGTTAGTCCTG
CTGTCGCGATTAATAAGCAAGCGTGCTTGCCCACGTTACGCCTCTCTTAT
TGCCGCTAGTTCTACATATGGGAGAGCCAGCCTGAAGTTCTGGCGCGTCA
CCTCCTTCTTCTGCAAATTGTGCAAGATTGGGAGCTGCCTATCCGGCAGA
GAGCCAACCTCTTCCTTGAGGTGTTTGGGAACTGCTTGGTGCAGGTGCTC
ACCGCATACAGTACGTGCCACCCAAAGGAGGGATATGTAAACGGCAGTAT
TTGGACCTACCATAGCAGCAGTAGTGGCAGTGGTGACACTAAATAACGAT
ACTGTCTGTAGTGCATATCTTACGTAATTTACTTCAATAATTGAATGAGA
GGAAGAAAGAAATGAGACGTTAACCGAGTCGTGTTATTTTGATTCTTAAA
AAAATGTTATTGGGAACAATTCTTGGGATATCTAGTGTAAGAAATACTAC
TTCGTATACCGTTAATGATTCATCTACATCGCTCTTATGTTAATATTGTG
ATATTTCTGTACAACACTAACCCATCCGATGCTACAGGTAAACTTTAAGA
AAACTGCCGTGTGGAGTGACCTGTAAAACGGGGTAGACAAAATTTCGAGG
TAAACGTCCAATTTTGTTGTATCCAACCTAAATCGATTGCGTTAGTTCAA
TGTAGCTCCATATATTTCAATTCCCAGTTCAGCGCGGGCCCGCTGACAAG
AAATCACCCAAAAATGATGAGAGGTTCACATTTTGCTAACCCATGGTAAG
TCTGTTCAAGAAAATTGACTCAAGGATGGCCTTACCTTAATTCCTGTATG
AAAGGGAGAAATAAATGCCCATGATGCTCGCCAAAGTGAGGTGTTGAGCT
TCACCCAAAAGAAGAGCTTCTTATAATCGGGTCCGGTACTGTTTTTGGCA
ACCATCAGGGGAAGCAGTTTGTGTCTCTAGCTCCACGGTGAATAGTGCGA
ATGAAGAATAGATTCGGCGCTATGGCTTTGAAGAACTCACACTCCTGCTG
TATCCGCCTTTGTTAATCAAATGATGCGGGATCAACTGTGGCTCTGGGGC
TATTGTTTACGTAATTCCTTTACCCTGCATCTCGATGTACCATTGCCTCT
TCAACAACAGGAACGGACAAAGGATTACATCGCTCGCCAGGGAAAGGCCC
TTGTGGAGTTGTTATTCTCGTTAGATGCGAACGCTCATGTCGTGGATCTT
TCT
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Coding sequence (CDS) from alignment at H-paniculata_contig18961:3452..4854+

>mRNA_H-paniculata_contig18961.4739.1 ID=mRNA_H-paniculata_contig18961.4739.1|Name=mRNA_H-paniculata_contig18961.4739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig18961:3452..4854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTGGTATGCCAGCCAGGCGATATTGGGCATGTCCTCCGCACCATAAG
TTCACGACGGCGACACCCACAGCACACCATCAACATCTTGGTATGCCAGC
CAGGCGATATTGGGCATGTCCTCCGCACCATAAGTTCACGACGGCGACAC
CCACAGCACACCATCAACTTCTACATATGGGAGAGCCAGCCTGAAGTTCT
GGCGCGTCACCTCCTTCTTCTGCAAATTGTGCAAGATTGGGAGCTGCCTA
TCCGGCAGAGAGCCAACCTCTTCCTTGAGGTGTTTGGGAACTGCTTGGTG
CAGTTCTACATATGGGAGAGCCAGCCTGAAGTTCTGGCGCGTCACCTCCT
TCTTCTGCAAATTGTGCAAGATTGGGAGCTGCCTATCCGGCAGAGAGCCA
ACCTCTTCCTTGAGGTGTTTGGGAACTGCTTGGTGCAGGAACGGACAAAG
GATTACATCGCTCGCCAGGGAAAGGCCCTTGTGGAGTTGTTATTCTCGTT
AGATGCGAACGCTCATGTCGTGGATCTTTCTGAACGGACAAAGGATTACA
TCGCTCGCCAGGGAAAGGCCCTTGTGGAGTTGTTATTCTCGTTAGATGCG
AACGCTCATGTCGTGGATCTTTCT
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