mRNA_H-paniculata_contig18953.4734.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU) HSP 1 Score: 191 bits (484), Expect = 6.100e-50 Identity = 118/299 (39.46%), Postives = 171/299 (57.19%), Query Frame = 1
Query: 7 PEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCS---RDEGGETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGRITHVRLDMN*T*YRIRGIPSSTSYGGPMSRRLQYMQVHFSLSQYCA*PRHY 891
P+A+ W+AA EE A K E D P GRK + KW F+ K DGS+ +YKARLVA+GF+QVEG D+ +T APV++ +++RTV +LAA +D +++ +DV A+LN ++EE+++ PP F D V RLRKSLYGLKQ R W + +G ERS D S + E G +++A+YVDD++IAG R +D FK S+RF M DLGS +LG+E+ RDR T++IS + L+ + G+ + PM L+ + LS+ P+ Y
Sbjct: 999 PDADMWKAACAEELFAFAKA---ELYDEVEKPRGRKVVGCKWVFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFD---HDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENGVI-LIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERH-------GMANCRPVSTPMEPNLKLEK----LSEATIDPKPY 1279
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA) HSP 1 Score: 175 bits (444), Expect = 2.890e-48 Identity = 106/247 (42.91%), Postives = 156/247 (63.16%), Query Frame = 1
Query: 13 AEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRD--IPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD-CSRDEGGETDI-LVAVYVDDLVIAGRR-ENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGR 738
A KW+ A E E +L+ N T D LP GRKAI KW F+ K K DGS+ +YKARLVA+G+SQ G D+ ET PV + +++R + SLAA+H+ EL+ +DV+ A+LN+ ++E++++++P + V +L+KSLYGLKQ R WN T+D F++ IG +S D C + + DI LV++YVDDL++A E + K S+RF+M DLG LS LGIE+ R P+G++ I +
Sbjct: 57 ASKWKDACESEIKSLLDNKT---WDVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQDEDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCLGIEIVRS-PSGSVFIHQSK 299
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 179 bits (455), Expect = 1.230e-47 Identity = 104/245 (42.45%), Postives = 154/245 (62.86%), Query Frame = 1
Query: 10 EAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 726
+A KW+ A + E +L+KN T D LP GRKAI +W F K + G + R+KARLVA+GFSQ G D+ ET APV + +++R V SLAA++ +L +DV A+LN ++E++++ P + D P V +L++SLYGLKQ+ R WN T+DDF++ +G ++ +D RD G+ I VA+YVDDLV+A + + D KH S+RF M DLG L LG+E++ DR +G +T+
Sbjct: 294 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTV 531
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 173 bits (438), Expect = 1.490e-47 Identity = 101/245 (41.22%), Postives = 152/245 (62.04%), Query Frame = 1
Query: 10 EAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 726
+A KW+ A + E +L+KN T D LP GRKAI +W F K + G + R+KARLVA+GFSQ D+ ET APV + +++R V SLAA++ +L +DV A+LN ++E++++ P + D P V +L++SLYGLKQ+ R WN T+DDF++ +G ++ +D RD G+ I VA+YVDDLV+A + + + KH S+RF M DLG L LG+E++ D +G +T+
Sbjct: 35 DAVKWKEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTV 272
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A165UZ38_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165UZ38_9AGAM) HSP 1 Score: 173 bits (439), Expect = 2.050e-47 Identity = 101/244 (41.39%), Postives = 154/244 (63.11%), Query Frame = 1
Query: 10 EAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVG-IGLERSITDCSRDEGGETD--ILVAVYVDDLVIAGRREN-VDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 729
E ++W A ++E +LV+NGT E + P GRKAI ++W F+ K DGS+ RYK RLVA+GFSQ G D+ ET AP + ++LR + +LAA D ELE VD+ AYLN ++EE+++++ P F + +V RL+K LYGLKQ R+W+ L++ L +G R + S G+ D I++ V+VDD+ IA + + + K + Q F+++DLG S +LG+E++RDR + T+TIS
Sbjct: 53 ERQQWLKAAQDEIQSLVENGTFELVE---CPPGRKAIGSRWVFKVKRNADGSIERYKGRLVAKGFSQRPGFDYNETFAPTPKWASLRAILALAALEDLELESVDISTAYLNGTLEEDVYMRQPKGFE--QKGPEWVWRLQKLLYGLKQAGRHWHEKLNEVLTEKLGFSRLTCEHSVWVYGKDDVCIIIPVFVDDMTIASKSSAAIQKVKDDLRQHFKLRDLGPTSWLLGVEIKRDRSSRTLTIS 291
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS) HSP 1 Score: 182 bits (461), Expect = 6.660e-47 Identity = 108/245 (44.08%), Postives = 148/245 (60.41%), Query Frame = 1
Query: 7 PEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD-C--SRDEGGETDILVAVYVDDLVIAGRR-ENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 729
PE +W+ AM+EE + + GT ED LPAGR I KW F +K EDG+++RYKARLVAQG+SQ+ G D+ ET APV R+ ++R +AA D E+ +DV AYLN +EEE++++ P + S V RLRK+LYGLKQ+ R WN D L IG + D C R G I + V+VDDL+I E++ E K F +KDLG +++GIE++RDR NGTI++S
Sbjct: 889 PEWAEWKKAMDEEMSVIKEMGTYTKED---LPAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQPEGYDDGSGR---VCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMTI-ITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLS 1126
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 171 bits (432), Expect = 9.010e-47 Identity = 100/240 (41.67%), Postives = 150/240 (62.50%), Query Frame = 1
Query: 25 RAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIP-FVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITD----CSRDEGGETDILVAVYVDDLVIAGRRENV-DEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITI 726
+ A + E +L+KN T D LP GRKAI +W F K + G + R+KARLVA+GFSQ G D+ ET APV + +++R V SLAA++ +L +DV A+LN ++E++++ P + D P V +L++SLYGLKQ+ R WN T+DDF++ +G ++ +D RD G+ I VA+YVDDLV+A + + + KH S+RF M DLG L LG+E++ DR +G +T+
Sbjct: 1 KEACDSECDSLLKNDT---WDVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTV 233
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A8H8J5M1_9AGAM (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J5M1_9AGAM) HSP 1 Score: 177 bits (449), Expect = 1.380e-46 Identity = 108/248 (43.55%), Postives = 143/248 (57.66%), Query Frame = 1
Query: 4 GPEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDC------SRDEGGETDILVAVYVDDLVIAGRRENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITIS 729
GP+A KW+AAMEEE L K GT + + LPAGRKA+ KW K E G RYKARLVAQGFSQ G DF +T APV R+ ++R + SLA ++D+++ +DV AYL+A VEEEL++K P F + V RL +SLYGLKQ R WN D L +G TD D G ++A +VDDLV+ R N + + F M+DLG++ LGI R+R GT+T++
Sbjct: 84 GPDAAKWQAAMEEEVNTLKKMGTYQLVE---LPAGRKAMGNKWVLTIKRNELGEPIRYKARLVAQGFSQQPGIDFGQTFAPVVRLDSIRILASLANQNDWDIRQLDVHSAYLHAKVEEELYMKQIPHFEDGT---SLVLRLNRSLYGLKQAGRMWNQMFDSKLKQLGYLPCATDTCVYHRIDIDAGKPRVSILANHVDDLVVITSRNNTESVLNELLHEFEMRDLGAIRHYLGISFTRNREQGTLTLN 325
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A392MGQ0_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MGQ0_9FABA) HSP 1 Score: 174 bits (440), Expect = 5.380e-46 Identity = 99/235 (42.13%), Postives = 148/235 (62.98%), Query Frame = 1
Query: 16 EKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCSRDEG------GETDILVAVYVDDLVIAGR-RENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRR 699
++WR AM +E AL +N T E RLP G+KA+ +W ++ K K G V +YKARLVA+G++QVEG+DF ET APV +M+T+R + ++A +EL +DV A+L+ ++EE+++++PP + +++ V RLRKSLYGL+Q RNW + L LV G + +C D G T I+V +YVDDLV+ G ++ ++FK S+ F MKDLG L LG+E+ R
Sbjct: 201 QEWREAMSQELKALEENKTWEMS---RLPKGKKAVGCRWVYKVKYKSTGEVEKYKARLVAKGYTQVEGDDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGELDEEVYMEVPPGYKVPDKEM--VCRLRKSLYGLRQASRNWYSKLSQALVKYGFQ----ECEADHSLFTYSHGSTFIVVLIYVDDLVVTGNDAKSCEKFKQYLSKCFHMKDLGELKYFLGLELAR 426
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Match: A0A1Y1IGG8_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGG8_KLENI) HSP 1 Score: 177 bits (450), Expect = 1.700e-45 Identity = 108/267 (40.45%), Postives = 159/267 (59.55%), Query Frame = 1
Query: 7 PEAEKWRAAMEEEWGALVKNGT*ESEDPGRLPAGRKAIRTKWTFERKLKEDGSVARYKARLVAQGFSQVEGEDFFETSAPVTRMSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDIPFVRRLRKSLYGLKQNRRNWNNTLDDFLVGIGLERSITDCS---RDEGGETDILVAVYVDDLVIAGRRENVDEFKHNRSQRFRMKDLGSLSRVLGIEVRRDRPNGTITISHGRITHVRL-DMN*T*YRIRGIP 795
PEAE WR AM+EE+G+L +N T E +P P+G K I KW F+ K E+G + RYKARLV +GF Q +G DF E APV+R TLRT+ ++AA D E++ +D+ A+LN ++EE++++ P F + RL+KSLYGLKQ R W L + G+G E S D + R+ + VAV+VDD ++ G++ V K ++ F ++DL ++ LG+EV+RDR N T+T++ R L D + R RG+P
Sbjct: 571 PEAELWRKAMDEEFGSLQENQTWELAEP---PSGVKPIPCKWAFKLKRDENGQINRYKARLVIKGFRQKKGVDFEEVFAPVSRHVTLRTLLAVAAVEDLEVDQLDIKTAFLNGELDEEIWMEQPELFQTGGPKLAC--RLKKSLYGLKQAPRVWYLKLAKEMEGLGFEPSAADPALFIRESESDGRAFVAVWVDDALVVGKKSVVGNVKAALARIFEVRDLRPVNYFLGMEVKRDRENRTVTLTQKRAAKDLLEDYGMSATRPRGVP 832 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18953.4734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18953.4734.1 >prot_H-paniculata_contig18953.4734.1 ID=prot_H-paniculata_contig18953.4734.1|Name=mRNA_H-paniculata_contig18953.4734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp MSTLRTVFSLAAEHDFELEGVDVDVAYLNASVEEELFIKLPPEFSPFSRDback to top mRNA from alignment at H-paniculata_contig18953:2..1368+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18953.4734.1 ID=mRNA_H-paniculata_contig18953.4734.1|Name=mRNA_H-paniculata_contig18953.4734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1367bp|location=Sequence derived from alignment at H-paniculata_contig18953:2..1368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18953:2..1368+ >mRNA_H-paniculata_contig18953.4734.1 ID=mRNA_H-paniculata_contig18953.4734.1|Name=mRNA_H-paniculata_contig18953.4734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig18953:2..1368+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |