mRNA_H-paniculata_contig18953.4735.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18953.4735.1
Unique NamemRNA_H-paniculata_contig18953.4735.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18953.4735.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 6.360e-5
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 3 
Query:    3 RDPAVDMIIVMEDGKIIASGQYEELEAGGCLASLD 107
            RDP VD IIVM  GKI+  G YEELEA G  A+L+
Sbjct:  605 RDPEVDQIIVMHQGKIVGKGSYEELEASGSFAALE 639
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18953.4735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSW3_ECTSI6.360e-562.86Multidrug resistance-associated protein-like prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18953contigH-paniculata_contig18953:4144..4635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size192
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18953.4735.1prot_H-paniculata_contig18953.4735.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18953 4144..4615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929454.5413697-CDS-H-paniculata_contig18953:4143..42701622929454.5413697-CDS-H-paniculata_contig18953:4143..4270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 4144..4270 -
1691480868.4686925-CDS-H-paniculata_contig18953:4143..42701691480868.4686925-CDS-H-paniculata_contig18953:4143..4270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 4144..4270 -
1622929454.5539637-CDS-H-paniculata_contig18953:4571..46151622929454.5539637-CDS-H-paniculata_contig18953:4571..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 4572..4615 -
1691480868.4775062-CDS-H-paniculata_contig18953:4571..46151691480868.4775062-CDS-H-paniculata_contig18953:4571..4615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18953 4572..4615 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929454.5659447-UTR-H-paniculata_contig18953:4615..46351622929454.5659447-UTR-H-paniculata_contig18953:4615..4635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18953 4616..4635 -
1691480868.485701-UTR-H-paniculata_contig18953:4615..46351691480868.485701-UTR-H-paniculata_contig18953:4615..4635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18953 4616..4635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18953.4735.1

>prot_H-paniculata_contig18953.4735.1 ID=prot_H-paniculata_contig18953.4735.1|Name=mRNA_H-paniculata_contig18953.4735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MIIVMEDGKIIASGQYEELEAGGCLASLDGGSGEADSGTDSNGSELSGEH
KESEVLD
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mRNA from alignment at H-paniculata_contig18953:4144..4635-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18953.4735.1 ID=mRNA_H-paniculata_contig18953.4735.1|Name=mRNA_H-paniculata_contig18953.4735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig18953:4144..4635- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGGATCCGGCAGTGGACATGATTATCGTCATGGAAGACGGAAAGATT
ATCGCCAGTGGGCAGTGAGCTAAAATATCTCAGCCTTTAAACGCCAGTCT
GAGTGGTCCATGGTCACTGTGTACTGTAGTTTGTTGGATTAATATATGAT
TATCATGCTTGGACTCCGACTAAGTGTGATTGCTGTGGAGTTTGGTGACG
AACTTAGTGAAGCGATTCATACATTTTTGATGGTCAATGAGGATCTCTGA
GAGATTAAGTTCGCTATGGTTGAGTATAATCGAAGTAAAATACTCCGGAG
TACAGTACAGTACACACCCCGCCGATAATCCTTTGCCCCCTTCTGACATT
GACACATTTAAACAGATATGAAGAGCTGGAGGCTGGTGGCTGCCTGGCGT
CTCTCGATGGCGGGTCTGGCGAGGCCGACTCTGGGACAGACTCAAACGGC
AGCGAATTATCCGGAGAACACAAAGAATCTGAGGTGCTGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig18953:4144..4635-

>mRNA_H-paniculata_contig18953.4735.1 ID=mRNA_H-paniculata_contig18953.4735.1|Name=mRNA_H-paniculata_contig18953.4735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig18953:4144..4635- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTATCGTCATGGAAGACGGAAAGATTATCGCCAGTGGGCAATGATT
ATCGTCATGGAAGACGGAAAGATTATCGCCAGTGGGCAATATGAAGAGCT
GGAGGCTGGTGGCTGCCTGGCGTCTCTCGATGGCGGGTCTGGCGAGGCCG
ACTCTGGGACAGACTCAAACGGCAGCGAATTATCCGGAGAACACAAAGAA
TCTGAGGTGCTGGATATATGAAGAGCTGGAGGCTGGTGGCTGCCTGGCGT
CTCTCGATGGCGGGTCTGGCGAGGCCGACTCTGGGACAGACTCAAACGGC
AGCGAATTATCCGGAGAACACAAAGAATCTGAGGTGCTGGAT
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