mRNA_H-paniculata_contig1895.4732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1895.4732.1 vs. uniprot
Match: D7FMR1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR1_ECTSI) HSP 1 Score: 619 bits (1597), Expect = 8.420e-183 Identity = 667/1608 (41.48%), Postives = 771/1608 (47.95%), Query Frame = 1
Query: 1 TRKNRAREEQHAILRLLLEFSDLLERDWCRAVADD--GSQGNKGEGVPGGXXXXXXXXXXXSTSRRIQNMGTLLERLAPLIDWSSETVAAVEPELRELLFVLLDADLSFDLSSTKYPHFVGGAVAATLQEGRIAPCGNVLKLHLTLRRSAAWQRRWSRAPALAHRLALSNSVCARGACCALVAQAYGLPELPRQLQFRGILSRLLHDRSGGVRGEAVKALAFVAAIADASAGRWLLLLGEASCRASWDVDVSVRRASVDSLLQIGHRLLAVLDETNARGAAVRPETGGRSSVTGNGSGTGDDEIDGWHAAAADVERTR--RDTHRLRCRLLPILLRLASDNDWQVRAEVACRLDSLCVALGEQWSVVTMEILPTLVVDADPDVRCEAIRCLPRLARILLGFAMSSHAGEQQIAPTGAVPVSGSSGAAAVAGAVAVAPSVVIGSLEEEVAAADAGNVNGRATSETDVVPKDGAAMGAAVLASSVPVAVAVGPAEGAAVE---TAAVAGENGSKRAGAVENVKAMLRDLSVHQTVPPVEAKTEISVPTSKASMPT----TGTETESTVDQNEGEAVAVAANQTDRRQRPEGGRLG----SGISGGVGSGGLGEAGQKARKSILGALMPAAACLVDDPAAEVRGTAAVALGEMLRLMVGFEDYVAALGSARFGGLGGGGAVESGADGGIRAGAVTKRVSGLENDSMATCCCVTGEDEYGGGDMAACGASRKRGEADDRTAVEG-VESGSGRRGGR-VCHGKVLQAAMAXXXXXXXXXXXXXXXXXXXELMDLAGFDSAEDQLDVDENEQSASGGEGSDNPQ-LPFGKHDDAGGNDVGLVGPAEQGGESYELAENVTAVT----GEVDGEDTHVTLAHQKNALFNSCEIRRGVVSENESDSGRGSIGDCGEADGDEHTETGFDDANENSGGGSGGNLSVEADDGGQAVVEPSSSVDAELGANAKTPARRPLSASARPYLP--QQLTAARDGADKKEQTPTEENVE--VSPPSILPELVLQMEAIEGGNGNLEM--------------EQGLGEQQYEGDAQRQHRRSGQEHEMIDPSASSADKSDEMADGEGGGGGRSSIGSSDGEGYETGTXXXXGASSV-DAIDGEQKNPDDSENLNNLDPAEFVDIYNPSSDLLIVLVARLLLDTNAHVACTMLQALRPAWMPELGPGPSPEGSAGSDGVXXXXXXXXXXXXXVAEEAGGDGAVRGFQQERQVGAGGGVEGGAP--RRSCMLTPAQVGCVLPALSELYGSQLWRVRAAVAEALPALVSCTLCDRLKEEVINLTRRMLFDRVDAVRRSTAEQLVMAARIDLDRCRGRLFHHLPDGVWCRNSGLPSLSIRSEVAAPQDSLPLSAPSLSMPWQQRXXXXXXXXLRQEVEGEPLCQTETEKKIAGLLLSVSAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVQEGIGAGGGEGAKCEAGERQSHAHSDVVLQQGQGGDGVGCTREMGPVGQGWEPLDRSGSCGLWLRLVMVPLMRECLEGSYRGKLLALHMTQAAFRLGVTTPAVMSSVIVPTLLRGLSDRLP 4695
T + R EEQ +I+RLLLEFS LLERDWCRA D+ G G G PG XXXXXXXXX+ RRI+NMG LLE+LAPL+DW SE VAAVEPELRELL VLLDADL FDLSSTKYPHFVGGAVAA LQE R + L L +S R S+ PALA RL LSNSVCARGACCALVAQ Y +P LPRQLQFRGILSRLLHDR+ GVRGEAVKALA VAA+ADASA RWLLLLGE RAS D+D+SVRRASVDSLLQIGHRL+ VL E+ R R+ H LRC+++PIL+RLA DNDWQVR E+ACRLDSLCVALGEQWSVVT EILP LV D DPDVRCEAIRCLPRLARILLGFAMS +A EQ +A+ G E +VP S VP A G G A A + GA E A + Q A + T TG + V + G+ SG GGV G L AG+KARK ILGALMPAA CL+DDPAAEVRGTAAV LGEMLRLMVGFEDYVA L S + + D +G V+ G G R R VCHG+ ++AA+AXXXXXXXXXX EL+DLAGF++A G+GSD L A G V ++ P GGE E V + +VD + + AL +DGG E AE YLP + L+AA D P ++E +PP +++ + GG+ E E +D S D +E G G G ++ D G GA++V IVLV RLLLD +A+VACTMLQ +G G + +G G +G+ + GG+ G P RRSC+LTPAQVGCVLPAL+ELYGS LWRVRAAVAEALP+LVS TLC+ L++EV++L+RRMLFDRVDAVRRS AEQL+MAARIDLDRC RL HH+P ++ GLPSLS A + AP L ++GE E+ + G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +GG C L GGDG G E PV EP DR+G+CGLWLRLV+VPL+ ECLEGSYR KLLALHMTQAAFRLGVTTPAVMSSV+VP LLRGL D LP
Sbjct: 862 TLRLRPEEEQGSIVRLLLEFSGLLERDWCRARRDEPQGQNATDGSGNPG---XXXXXXXXXTAGRRIENMGVLLEQLAPLLDWESEAVAAVEPELRELLCVLLDADLRFDLSSTKYPHFVGGAVAAILQESR----SGIESLPLIPIKSCRTSRPLSKPPALAQRLVLSNSVCARGACCALVAQTYSVPPLPRQLQFRGILSRLLHDRTPGVRGEAVKALALVAAVADASAVRWLLLLGE---RASLDIDLSVRRASVDSLLQIGHRLVGVLGESTPRSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREGHALRCKVMPILVRLAGDNDWQVRVEIACRLDSLCVALGEQWSVVTAEILPALVADIDPDVRCEAIRCLPRLARILLGFAMSGYA-EQXXXXXXXXXXXXXXARSALGXXXXXXXXXXXXXXXXXXXXXXLGE-------EAFLVP------------SPVPPAAEAGGDSGKTYHGYTDANDADRSSRDETGAPEQQPARDDAGTEGQRSSSAVASESGQIGXXXXXXXTAGAATGADDSGVVGETGGDXXXXXXXXXXXXXXXXXXXXXXXXXSGYQGGV-RGRLTLAGRKARKGILGALMPAAGCLIDDPAAEVRGTAAVTLGEMLRLMVGFEDYVATLAST------------ARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSDGGDGAVDVGFGPRPRRRVCHGRAMRAAVAXXXXXXXXXXEAAMTA---ELIDLAGFETA---------------GDGSDRTAGLDDADSKGAAGAAVQVMAPTTSGGEQQGEGEVVGGLPFAKHDDVDAGGRELVALCEPAALL---------------------------------------------------------EDGGGDRSEEGVETPAEXXXXXXXXXXXXXXDD---YLPPPRSLSAAGDA-------PVSVSLEDDSTPPPDYDDVLRGRDRAGGGSAGAERLVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPDERLDLSLRD-DHDEEDCGGGGSLGSDDAVNGCDDLGEPLLPSNAPGATAVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVLVTRLLLDADANVACTMLQVAGGEATGCVGTGDAGDGQ-GHEGLAVGGGD--------CADQGGEFRECGXXXXXXXXXXXXXXXXTPVLRRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCNLLRDEVLHLSRRMLFDRVDAVRRSAAEQLIMAARIDLDRCPLRLLHHVPGACPGQDGGLPSLSSSPSAAVAAVTTAGVAPDAGA--------GSAGSLVVPLKGEE----ESPQLATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-------------------------SGGAPAGDC--------------LDVSGGGDGGGARSEGVPVE---EPWDRAGACGLWLRLVVVPLVVECLEGSYRTKLLALHMTQAAFRLGVTTPAVMSSVVVPVLLRGLRDPLP 2277
BLAST of mRNA_H-paniculata_contig1895.4732.1 vs. uniprot
Match: A0A6H5KXG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXG2_9PHAE) HSP 1 Score: 596 bits (1536), Expect = 1.460e-180 Identity = 657/1691 (38.85%), Postives = 763/1691 (45.12%), Query Frame = 1
Query: 397 PCGNV-LKLHLTLRRSAAWQRRWSRAPALAHRLALSNSVCARGACCALVAQAYGLPELPRQLQFRGILSRLLHDRSGGVRGEAVKALAFVAAIADASAGRWLLLLGEASCRASWDVDVSVRRASVDSLLQIGHRLLAVLDETNARGAAVRPETGGRSSVTGNGSGTGDDEIDGWHAAAADVERTRRDTHRLRCRLLPILLRLASDNDWQVRAEVACRLDSLCVALGEQWSVVTMEILPTLVVDADPDVRCEAIRCLPRLARILLGFAMSSHAGEQQIAPTGAVPVSGSSGAAAVAGAVAVAPSVVIGSL-EEEVAAADAGNVNGRATSETDVVPKDGAAMGAAVLASSVPVAVAVGPAEGAAVETAAVAGENGSKRAGAVE--NVKAMLRDLSVHQTVPPVEAKTEISVPTSKASMPT-------------------TGTETESTVDQNEGEAVAVAANQTDRRQRPEGGRL-------GSGISGGVGSGGLGEAGQKARKSILGALMPAAACLVDDPAAEVRGTAAVALGEMLRLMVGFEDYVAALGS-ARFGGLGGGGAVESGADGGIRAGAVTKRVSGLENDSMATCCCVTGEDEYGGGDMAACGASRKRGEADDRTAVEG---VESGSGRRGGR-VCHGKVLQAAMAXXXXXXXXXXXXXXXXXXXELMDLAGFDSAEDQLDV-----DENEQSASG----------------GEGSDNPQLPFGKHDDA---GGNDVGLVGPA----EQGGESYELAENVTAVTGEVDGEDTHVTLAHQKNALFNSCEIRRGVVSENESDSGRGSIGDCGEADGDEHTETGFDDANENSGGGSGGNLSVEADDGGQAVVEPSSSVDAELGANAKTPARRPLSASARPYLPQQLTAARDGADKKEQTPTEENVEVSPPSILPELVLQMEAIEGGNGNLEMEQGLGEQQYEGDAQRQHRRSGQEHEMIDPSASSADKSDEMADGEGGGGGRSSIGSSDGEGYETGTXXXXGASSVDAIDGEQKNPDDSENLNNLDPAEFVDIYNPSSDLLIVLVARLLLDTNAHVACTMLQALRPAWMPELGPGPSPE---------------------------GSAGSDGVXXXXXXXXXXXXXVAEEAGGDGAVRG--FQQERQVGAGGGVEGGAP---------RRSCMLTPAQVGCVLPALSELYGSQLWRVRAAVAEALPALVSCTLCDRLKEEVINLTRRMLFDRVDAVRRSTAEQLVMAARIDLDRCRGRLFHHLPDGVWCRNSGLPSLSIRSEVAAPQDSLPLSAPSLSMPWQQRXXXXXXXXLRQEVEGEPLCQTETEKKIAGLLLSVSAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVQEGIGAGGGEGAKCEAGERQSH-AHSDVVLQQGQGGDGVGCTREMGPVGQGWEPLDRSGSCGLWLRLVMVPLMRECLEGSYRGKLLALHMTQAAFRLGVTTPAVMSSVIVPTLLRGLSDRLPNVRLTAARVADDIISVAAMSAWPXXXXXXXXXXXXXXASPSSAVGMKGGEQNDVDVGSTRGTPLGIPGEASRRPPHEVSAGMPGGTRSGDHAEDEPADYAVSMKSGAAASSVGWGCGWARIEMQLEVLSRGDPDRDVAFFANQALKPRWESDCSSR 5163
PC L LHL ++A APALAHRLALSNSVCARGACCALVAQ Y +P LPRQLQFRGILSRLLHDR+ GVRGEAVKALA VAA+ADASA RWLLLLGE RAS D+D+SVRRASVDSLLQIGH L+ VL ET R + H LRC+++PIL+RLA DNDWQVR E+ACRLDSLCVALGEQWSVVT EILP L+ D DPDVRCEAIRCLPRLARILLGFAMS +A + +AP +L + + VP D A V+ S VP A G GE+G G + + + RD + PV + P S +++ + TG + V G+ V D P GGR+ G G GGV G L AG+KARK ILGALMPAAACLVDDPAAEVRGTAAV LGEMLRLMVGFEDYVA L S AR +RAG + +G V+ G G R R VCHG+ ++AA+AXXXXXXXXXX EL+DLAGF++A D D D + + A+G GEG LPF KHDD GG V PA + GG+ E A G+D+ + ++++ + R S+G G+A +SV DD TP P + RDGA T E V+ S D + + D E + T XXX LIVLV RLLLD +A+VA TMLQALRP W+PELGPGP P+ G + G+ + GGDGA RG F++ GG RRSC+LTPAQVGCVLPAL+ELYGS LWRVRAAVAEALP+LVS TLC+ L++EV++L+RRMLFDRVDAVRRS AEQL+MAARIDLDRC RL HH+P ++ GLPSLS R E E PL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K GER+S A + L GGDG G E V EP DR+G+CGLWLRLV+VPLM ECLEGSYR KLLALHMTQAAFRLGVTTPAVMSSV+VP LLRGL D LPNVRL+AARVADDI+SVAAMS+WPXXXXXXXXXXXXXX + G G+ R GG SG E WGCGW +E +LE +S GDPDRD A+FA QALKP+W D R
Sbjct: 3 PCYRTQLLLHLPYEQAAL------EAPALAHRLALSNSVCARGACCALVAQTYSVPPLPRQLQFRGILSRLLHDRTPGVRGEAVKALALVAAVADASAVRWLLLLGE---RASLDIDLSVRRASVDSLLQIGHHLVGVLGETTPRQXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXEGHALRCKVMPILVRLAGDNDWQVRVEIACRLDSLCVALGEQWSVVTTEILPALIADTDPDVRCEAIRCLPRLARILLGFAMSGYAEQXXXXXXXXXXXXXXXXXXXXX----MAPDPARSALGDXXXXXXXXXXXXXXXXXXXEAVPGDEAF----VVPSPVPPAAEAG-------------GESGETHDGYTDANDADSSSRDETGAPEQQPVRSDAGTEGPRSSSAVASESGQXXXXXXXXXXTAGAATGADDSGVVGHTGGDGXEVXXXXADA---PPGGRMSAAAEGSGDGYQGGV-RGRLTLAGRKARKGILGALMPAAACLVDDPAAEVRGTAAVTLGEMLRLMVGFEDYVATLASTART------------TSSRVRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSDDGDGTVDVGFGPRPRRRVCHGRAMRAAVAXXXXXXXXXXEAAMTA---ELIDLAGFETAGDGGDRTAGLDDADSKGAAGAAVQVSAPTTSGGEQQGEGEVVGGLPFAKHDDVNAGGGELVAFCEPAVLLEDGGGDRSEEGVETPA------GKDSSEKRSEERSSRSDDLPPPR-------------SLGATGDAP-----------------------VSVSLDDD-------------------STP----------PPDYDDVLRGRDGAGGG-STGAERLVDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAVNGCDDLREPL-------------------LPSNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLIVLVTRLLLDADANVARTMLQALRPGWVPELGPGPGPKPYRPISXXXXXXXXTGGETPPSYVEVAGGEANGGMGTGDAGDGQGHEGLGV-GGGDGADRGGEFREGEGXXXGGXXXXXXXXXXXXTPVLRRSCLLTPAQVGCVLPALAELYGSPLWRVRAAVAEALPSLVSSTLCNLLRDEVLHLSRRMLFDRVDAVRRSAAEQLIMAARIDLDRCPLRLLHHVPGACPGQDGGLPSLSSXXXXXXXXXXXXXXXXXXXXXXXXXLVVPP----RGEGESPPLATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-------------------------------------------------KTPGGERESGGAPARDCLDVCGGGDGGGARSEGVHVE---EPWDRAGACGLWLRLVVVPLMVECLEGSYRTKLLALHMTQAAFRLGVTTPAVMSSVVVPVLLRGLRDPLPNVRLSAARVADDILSVAAMSSWPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEGD-----GTDGDVLARG---------GGAGSGGDGE-------------------WWGCGWEEVESRLEAVSGGDPDRDAAYFATQALKPKWVGDSIKR 1458
BLAST of mRNA_H-paniculata_contig1895.4732.1 vs. uniprot
Match: A0A6H5L3J4_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J4_9PHAE) HSP 1 Score: 145 bits (366), Expect = 5.110e-31 Identity = 94/129 (72.87%), Postives = 102/129 (79.07%), Query Frame = 1
Query: 22 EEQHAILRLLLEFSDLLERDWCRAVADDGSQGNKGEGVPGGXXXXXXXXXXXSTSRRIQNMGTLLERLAPLIDWSSETV------AAVEPELRELLFVLLDADLSFDLSSTKYPHFVGGAVAATLQEGR 390
EEQ +I+RLLLEFS LLERDWCRA D+ N +G G XXXXXXXXXXX+ SRRI+NMG LLE+LAPL+DW SE V AAVEPELRELL VLLDADL FDLSSTKYPHFVGGAVAA LQE R
Sbjct: 1372 EEQGSIVRLLLEFSGLLERDWCRARRDEPQGQNTADGS-GXXXXXXXXXXXXTASRRIENMGVLLEQLAPLLDWESEAVSIIEAVAAVEPELRELLCVLLDADLRFDLSSTKYPHFVGGAVAAILQEVR 1499 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1895.4732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1895.4732.1 >prot_H-paniculata_contig1895.4732.1 ID=prot_H-paniculata_contig1895.4732.1|Name=mRNA_H-paniculata_contig1895.4732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1655bp MGTLLERLAPLIDWSSETVAAVEPELRELLFVLLDADLSFDLSSTKYPHFback to top mRNA from alignment at H-paniculata_contig1895:105..20637- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1895.4732.1 ID=mRNA_H-paniculata_contig1895.4732.1|Name=mRNA_H-paniculata_contig1895.4732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=20533bp|location=Sequence derived from alignment at H-paniculata_contig1895:105..20637- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1895:105..20637- >mRNA_H-paniculata_contig1895.4732.1 ID=mRNA_H-paniculata_contig1895.4732.1|Name=mRNA_H-paniculata_contig1895.4732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9930bp|location=Sequence derived from alignment at H-paniculata_contig1895:105..20637- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |