mRNA_H-paniculata_contig1895.4733.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1895.4733.1
Unique NamemRNA_H-paniculata_contig1895.4733.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1895.4733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1895contigH-paniculata_contig1895:20478..21924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size584
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929454.1587772-CDS-H-paniculata_contig1895:20478..206231622929454.1587772-CDS-H-paniculata_contig1895:20478..20623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1895 20479..20623 -
1691480868.3144038-CDS-H-paniculata_contig1895:20478..206231691480868.3144038-CDS-H-paniculata_contig1895:20478..20623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1895 20479..20623 -
1622929454.1741655-CDS-H-paniculata_contig1895:21487..219241622929454.1741655-CDS-H-paniculata_contig1895:21487..21924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1895 21488..21924 -
1691480868.325494-CDS-H-paniculata_contig1895:21487..219241691480868.325494-CDS-H-paniculata_contig1895:21487..21924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1895 21488..21924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1895.4733.1prot_H-paniculata_contig1895.4733.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1895 20479..21924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1895.4733.1

>prot_H-paniculata_contig1895.4733.1 ID=prot_H-paniculata_contig1895.4733.1|Name=mRNA_H-paniculata_contig1895.4733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
ILRLLCVGAEIRASEDAKLSSSSSSWVRSQRASVDTGALDSRQPVATAGG
AVACTTMAASTDVTIPAPPAPAPSGGGRDNRSNNNSDNQQMLFAEGTVAV
GVREGAGATPGEGDGQERDVGHVAEGGGDGGGGGVVGGGGGGYGIRAREE
QHAILRLLLEFSDLLERDWCRAVADDGSQGNKGEGVPGGGGIGG
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mRNA from alignment at H-paniculata_contig1895:20478..21924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1895.4733.1 ID=mRNA_H-paniculata_contig1895.4733.1|Name=mRNA_H-paniculata_contig1895.4733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1447bp|location=Sequence derived from alignment at H-paniculata_contig1895:20478..21924- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCCGTCTCCTTTGCGTCGGCGCGGAGATCCGAGCCTCCGAGGACGC
AAAGCTATCATCATCGTCATCATCTTGGGTTCGAAGCCAACGCGCTAGTG
TCGACACCGGTGCCTTGGACAGCCGACAGCCGGTAGCAACCGCCGGTGGT
GCCGTCGCCTGCACAACAATGGCCGCCAGCACTGATGTCACTATTCCCGC
GCCACCGGCACCGGCGCCGTCTGGCGGCGGAAGAGACAACAGAAGCAACA
ACAATAGCGATAACCAGCAGATGCTTTTTGCAGAAGGAACTGTGGCAGTT
GGGGTGCGAGAAGGGGCCGGGGCAACGCCCGGTGAAGGGGACGGGCAAGA
GCGGGACGTTGGGCATGTTGCTGAAGGGGGTGGGGATGGTGGTGGTGGTG
GTGTTGTTGGTGGTGGCGGTGGTGGCTATGGCATAAGGTATGCGTGGCAG
CACTATTGCCCGATCTATAGTGTGTCATGCTTTTGTGTCGCTGAATTACT
CGAGCTCCGCGCGTGTTGTCGTTTTATTGACGTATATACGGTACAGTCGA
CACCTTCAGCAAGTGAACAGACCGCGTGCTCCTCTTGTAGCATGTTTGTT
GGTGTGCCACACATGAGATGATATATTACCAAGGTATGTATGCATACTTC
ACCTCAATTGGATGCATGTCCTGAGATGTACGTTACCCCCCCGCTGCCGC
TACCACCGCACGCGCTGAAACTTGGAGCCATTCCTATGTAGCAGGCACTT
TTGGGAGGTGCAAATCTAAAAAAGCCCAGTTATACTGATTTAACGAAGTC
AACTACAGAGTGACTGCGGCATAAGGTGGCACGCACACAGGAGAGAAATA
TAGATTCATCAAGAATGTACGTTGCCCCCAAATGCCCGAAACGTAGAGCC
ATTGCTAGTTGCGGAAACCCCAGGCCTAACCCTAAAGTTTAATCTCCATC
CGCCCACGCACATTATCTCCGTCCTCCCGAGGACGCATTGTCAAGGTCTA
AGATTTACGGCATGCAAAACATAAGAAAAAGCCCCTTCCTTGTTGCTCTA
ATTTTGCCGATAATGTACACAAGTGGAATTTGAAGTCAACCAACACCCCT
ATTGGTCATGATCTAATTCTACTGATAAGTGCACGCAACTGAGGTTTGGA
TTAAGCTCCACAACCTCAACATGGGTGCAACGGAGTTATTATATGAGCGT
CCGAGCTGGAATTCAACTAACTGTGGCAAGTGAACTCCCCCCCCCCCACA
CACACACCCACCCATCCACTCACCCATCCACTCACCCACGCGAAAAAATA
GAGCCCGCGAGGAGCAGCACGCCATCCTGCGCCTTCTCCTCGAGTTCTCT
GACCTCCTCGAGCGAGACTGGTGCAGGGCCGTGGCGGATGATGGGTCGCA
AGGGAACAAGGGGGAGGGAGTGCCCGGAGGCGGAGGCATTGGCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1895:20478..21924-

>mRNA_H-paniculata_contig1895.4733.1 ID=mRNA_H-paniculata_contig1895.4733.1|Name=mRNA_H-paniculata_contig1895.4733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig1895:20478..21924- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATACTCCGTCTCCTTTGCGTCGGCGCGGAGATCCGAGCCTCCGAGGACGC
AAAGCTATCATCATCGTCATCATCTTGGGTTCGAAGCCAACGCGCTAGTG
TCGACACCGGTGCCTTGGACAGCCGACAGCCGGTAGCAACCGCCGGTGGT
GCCGTCGCCTGCACAACAATGGCCGCCAGCACTGATGTCACTATTCCCGC
GCCACCGGCACCGGCGCCGTCTGGCGGCGGAAGAGACAACAGAAGCAACA
ACAATAGCGATAACCAGCAGATGCTTTTTGCAGAAGGAACTGTGGCAGTT
GGGGTGCGAGAAGGGGCCGGGGCAACGCCCGGTGAAGGGGACGGGCAAGA
GCGGGACGTTGGGCATGTTGCTGAAGGGGGTGGGGATGGTGGTGGTGGTG
GTGTTGTTGGTGGTGGCGGTGGTGGCTATGGCATAAGATACTCCGTCTCC
TTTGCGTCGGCGCGGAGATCCGAGCCTCCGAGGACGCAAAGCTATCATCA
TCGTCATCATCTTGGGTTCGAAGCCAACGCGCTAGTGTCGACACCGGTGC
CTTGGACAGCCGACAGCCGGTAGCAACCGCCGGTGGTGCCGTCGCCTGCA
CAACAATGGCCGCCAGCACTGATGTCACTATTCCCGCGCCACCGGCACCG
GCGCCGTCTGGCGGCGGAAGAGACAACAGAAGCAACAACAATAGCGATAA
CCAGCAGATGCTTTTTGCAGAAGGAACTGTGGCAGTTGGGGTGCGAGAAG
GGGCCGGGGCAACGCCCGGTGAAGGGGACGGGCAAGAGCGGGACGTTGGG
CATGTTGCTGAAGGGGGTGGGGATGGTGGTGGTGGTGGTGTTGTTGGTGG
TGGCGGTGGTGGCTATGGCATAAGAGCCCGCGAGGAGCAGCACGCCATCC
TGCGCCTTCTCCTCGAGTTCTCTGACCTCCTCGAGCGAGACTGGTGCAGG
GCCGTGGCGGATGATGGGTCGCAAGGGAACAAGGGGGAGGGAGTGCCCGG
AGGCGGAGGCATTGGCGGAAGCCCGCGAGGAGCAGCACGCCATCCTGCGC
CTTCTCCTCGAGTTCTCTGACCTCCTCGAGCGAGACTGGTGCAGGGCCGT
GGCGGATGATGGGTCGCAAGGGAACAAGGGGGAGGGAGTGCCCGGAGGCG
GAGGCATTGGCGGA
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