mRNA_H-paniculata_contig18948.4731.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.510e-50 Identity = 96/118 (81.36%), Postives = 107/118 (90.68%), Query Frame = 1
Query: 187 PPTLIRCVALVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRVADQG 540
P T + CVALVA+ICGSVVA NSS+LLRSGA+LVGAVL LHAGGFA+GY MR+CGF+E++ART SIEVGMQNSALAVVLAQRGL DPLSAIPGAVSATCHSL+GSALAAYWR D+G
Sbjct: 334 PYTPLLCVALVAMICGSVVAANSSILLRSGAALVGAVLTLHAGGFAVGYGGMRACGFTEQEARTTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAYWRTGDRG 451
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.900e-35 Identity = 87/167 (52.10%), Postives = 109/167 (65.27%), Query Frame = 1
Query: 79 VIERGASDL--SDPRVFFNRHDNGLLIT*PATLGGHT---PPPTLIRCVALVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRVADQGQGMKKPVG 564
V++ A L S +V F GLL+ A G T P T + CVALVA ICGSVVAQN++ + SGA LV AV +HAGGF LGY ++ G ER +RT SIEVGMQNSALAVVLA+ DPL+A+PGA+SAT HS++GS LAA+WR +G ++P G
Sbjct: 165 VVQVSARQLVVSTAQVVFAPVALGLLLASKAQ--GFTRRLSPYTPLACVALVACICGSVVAQNAAAVAASGARLVAAVATMHAGGFTLGYMAAKAAGLGERASRTVSIEVGMQNSALAVVLARSAFPDPLTALPGAISATVHSVLGSCLAAFWRA--KGLDKEQPEG 327
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC) HSP 1 Score: 126 bits (316), Expect = 4.220e-30 Identity = 68/120 (56.67%), Postives = 87/120 (72.50%), Query Frame = 1
Query: 169 LGGHTPPPTLIRCVALVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRV 528
+ G TP + CV LV+LICGSV+AQ +S + +G L+GAV+ LH GGF LGY + R G+ E +RT SIE GMQNSAL VVLA R DPL+A+P A+SATCHS++GS+ AAYWR+
Sbjct: 184 VSGVTP----LLCVVLVSLICGSVIAQTASSFIAAGLPLLGAVIGLHLGGFLLGYFVPRILGYPEPISRTVSIETGMQNSALGVVLATRNFADPLTALPCAISATCHSVLGSSFAAYWRL 299
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: D7FZU1_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU1_ECTSI) HSP 1 Score: 113 bits (282), Expect = 9.690e-28 Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 1
Query: 340 MRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRVADQG 540
MR+CGFSE++ART SIEVGMQNSALAVVLAQRGL DPLSAIPGAVSATCHSL+GSALAA+WR D G
Sbjct: 1 MRACGFSEQEARTTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGDGG 67
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: A4RZC9_OSTLU (BASS family transporter: sodium ion/bile acid (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RZC9_OSTLU) HSP 1 Score: 115 bits (288), Expect = 1.610e-26 Identity = 70/149 (46.98%), Postives = 92/149 (61.74%), Query Frame = 1
Query: 82 IERGASDLSDPRVFFNRHDNGLLIT*PATLGGHTPPPTL-IRCVALVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWR 525
++ G +S +V GL++ A T P I V VALIC S++ + S+ +L +G +L+ AV +LH GF LGY L RS GFS + +RT SIEVGMQNSAL VVLA DPL A+P A+SAT HS++GS LAA+WR
Sbjct: 144 VDGGGLFVSTCKVVLLPVVAGLVLKKYAPKFSETLEPFAPITAVLTVALICASIIGRTSTQILAAGPTLIAAVALLHTLGFGLGYFLSRSAGFSSKTSRTMSIEVGMQNSALGVVLASAHFADPLVAVPCAISATVHSVLGSMLAAFWR 292
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: A0A7S4MZT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZT7_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.880e-26 Identity = 72/131 (54.96%), Postives = 88/131 (67.18%), Query Frame = 1
Query: 208 VALVALICGSVVAQNSSVLLRSGAS------------LVGAVLMLHAGGFALGYSLMRSC-GFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRVADQGQGMKKPV 561
V LVALICG VVAQN+S +L A ++G+VL LH+ GFA GY++ R F ER +RT SIE GMQNSALAVVLA+ DPL+++PGA+SATCHS +GS LAAYWR AD G K+ V
Sbjct: 141 VVLVALICGGVVAQNASTVLGGAAGGAISASRLLLPRVLGSVLTLHSIGFAAGYAIPRRLLNFGERTSRTVSIETGMQNSALAVVLARSIGADPLASLPGALSATCHSCLGSVLAAYWRFAD---GRKRKV 268
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: A0A5J4XCN8_9CHLO (Putative sodium metabolite cotransporter chloroplastic-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XCN8_9CHLO) HSP 1 Score: 116 bits (291), Expect = 3.360e-26 Identity = 65/119 (54.62%), Postives = 82/119 (68.91%), Query Frame = 1
Query: 178 HTPPPTLIRCVALVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRVAD 534
T P + V V LI GSV+AQN++ + +G LVGA++ LHAGGFA GY + + G E+ ART SIEVGMQNSAL VLA +DPL+A+P A+SA HSL+GSALAA WR +D
Sbjct: 262 QTAPFAPLVAVIAVVLILGSVMAQNAAAVTLAGPRLVGAIITLHAGGFAFGYGISKLAGLPEKAARTNSIEVGMQNSALGAVLAAVHFSDPLTAVPCALSACLHSLMGSALAAAWRSSD 380
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: A0A8J9SJJ5_9CHLO (Probable sodium/metabolite cotransporter BASS1, chloroplas n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SJJ5_9CHLO) HSP 1 Score: 117 bits (292), Expect = 4.120e-26 Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 160 PATLGGHTPPPTLIRCVALVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRVAD 534
P + +P L+ A+ L+ S+VAQN++ + +G L+ AV +LHAGGFALGY + + G ERQART SIEVGMQNSAL VLA DPL+AIP A+SAT HSL+GS LA +WR+ D
Sbjct: 271 PRAMARFSPFAPLLAS-AMTVLVSASIVAQNAAAVRIAGPRLILAVALLHAGGFALGYGVSKLLGVKERQARTNSIEVGMQNSALGAVLATLHFADPLTAIPAAISATMHSLLGSTLAGFWRLVD 394
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: W7U603_9STRA (Sodium bile acid symporter family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U603_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.640e-25 Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 1
Query: 187 PPTLIRCVA---------LVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYW-RVADQG 540
PP+L R + LVA ICG VVA N++ +L+SG SL+GAVL LH+ GF G+ + R+ GFS + A+T SIE GMQNSALAVVLA+ L PLS +PGAVSA CHS++GS A W R D+G
Sbjct: 281 PPSLTRGLTRSTPLVSGLLVAAICGKVVATNAAAVLQSGGSLLGAVLALHSFGFFFGFWMARALGFSRQVAKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSLAAWVWSREGDRG 408
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Match: A0A090M738_OSTTA (Bile acid:sodium symporter n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M738_OSTTA) HSP 1 Score: 114 bits (286), Expect = 2.890e-25 Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1
Query: 187 PPTLIRCVALVALICGSVVAQNSSVLLRSGASLVGAVLMLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPLSAIPGAVSATCHSLVGSALAAYWRVAD 534
P + V VALIC S++ + S+ +L +G SL+ AV+ LH GF GY L R GFSE+ +RT SIEVGMQNSAL VVLA DPL A+P A+SAT HS++GS LAA+WR D
Sbjct: 282 PYAPLAAVLTVALICSSIIGRTSTQILAAGPSLIVAVICLHTMGFFSGYVLSRGAGFSEKTSRTMSIEVGMQNSALGVVLASAHFADPLVAVPCAISATVHSVIGSMLAAFWRYMD 397 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18948.4731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18948.4731.1 >prot_H-paniculata_contig18948.4731.1 ID=prot_H-paniculata_contig18948.4731.1|Name=mRNA_H-paniculata_contig18948.4731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp MLHAGGFALGYSLMRSCGFSERQARTGSIEVGMQNSALAVVLAQRGLTDPback to top mRNA from alignment at H-paniculata_contig18948:2875..4634+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18948.4731.1 ID=mRNA_H-paniculata_contig18948.4731.1|Name=mRNA_H-paniculata_contig18948.4731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1760bp|location=Sequence derived from alignment at H-paniculata_contig18948:2875..4634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18948:2875..4634+ >mRNA_H-paniculata_contig18948.4731.1 ID=mRNA_H-paniculata_contig18948.4731.1|Name=mRNA_H-paniculata_contig18948.4731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig18948:2875..4634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |