mRNA_H-paniculata_contig18931.4729.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18931.4729.1
Unique NamemRNA_H-paniculata_contig18931.4729.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18931.4729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18931contigH-paniculata_contig18931:1336..1982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929453.7689333-CDS-H-paniculata_contig18931:1337..13971622929453.7689333-CDS-H-paniculata_contig18931:1337..1397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18931 1338..1397 -
1691480868.1072135-CDS-H-paniculata_contig18931:1337..13971691480868.1072135-CDS-H-paniculata_contig18931:1337..1397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18931 1338..1397 -
1622929453.7855563-CDS-H-paniculata_contig18931:1853..19821622929453.7855563-CDS-H-paniculata_contig18931:1853..1982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18931 1854..1982 -
1691480868.115031-CDS-H-paniculata_contig18931:1853..19821691480868.115031-CDS-H-paniculata_contig18931:1853..1982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18931 1854..1982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18931.4729.1prot_H-paniculata_contig18931.4729.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18931 1338..1982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18931.4729.1

>prot_H-paniculata_contig18931.4729.1 ID=prot_H-paniculata_contig18931.4729.1|Name=mRNA_H-paniculata_contig18931.4729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
TPEVTGGEGYLSLSDYRRKERRRKADEVAAKATAAKSSARVPDAAAAPSP
WSGPRYRTGRMEP
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mRNA from alignment at H-paniculata_contig18931:1336..1982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18931.4729.1 ID=mRNA_H-paniculata_contig18931.4729.1|Name=mRNA_H-paniculata_contig18931.4729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=647bp|location=Sequence derived from alignment at H-paniculata_contig18931:1336..1982- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCGGAGGTGACAGGCGGGGAAGGATATTTGTCTCTGTCTGACTACCG
GAGGAAAGAGAGGCGCCGCAAGGCGGACGAGGTGGCAGCAAAGGCGACGG
CGGCGAAGAGCAGCGCTCGAGTCCCCGATGTGAGCTTATTTTGGGTTCGT
TGGGGCGGTGATGCGCTGCATTTGGTTTTCTGATTCTGGTTGTGTAAATG
TCTACATTGTAGCTGGCAAGAGGGCAGCAGCCGCTTGGTTGTTGAACCAA
GTTCTGCTTATTAACGACTAGTATCTCACAGCAGACTCCAATCGATCTAA
GCAACAATCTACCCAAGCGCCCTTGAATGGATACCTCCACGACTTTACAC
TCCCTTGGAAGACAAGCCATGACGAGTTTAATCGTTTGTTTAGTGACGTT
CTAGTAGGTTTGTCTCGATTGACATGTTTAAGCTCTTTTGGCATGTCTTC
GTGTCTTTATCTTGATCATATACCGGCCTGAAGTATGTTGACATATTTCT
TTTGAATTTATGTCCTTAATATGTGAGTATTCCTATTAGTGAAACACCCC
TGTATATTCGTGTTGTTGCCTTCTTTGGCAAGCAGGCAGCAGCTGCTCCT
TCACCTTGGTCCGGACCCCGGTACAGGACGGGGCGGATGGAACCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig18931:1336..1982-

>mRNA_H-paniculata_contig18931.4729.1 ID=mRNA_H-paniculata_contig18931.4729.1|Name=mRNA_H-paniculata_contig18931.4729.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig18931:1336..1982- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCCGGAGGTGACAGGCGGGGAAGGATATTTGTCTCTGTCTGACTACCG
GAGGAAAGAGAGGCGCCGCAAGGCGGACGAGGTGGCAGCAAAGGCGACGG
CGGCGAAGAGCAGCGCTCGAGTCCCCGATACGCCGGAGGTGACAGGCGGG
GAAGGATATTTGTCTCTGTCTGACTACCGGAGGAAAGAGAGGCGCCGCAA
GGCGGACGAGGTGGCAGCAAAGGCGACGGCGGCGAAGAGCAGCGCTCGAG
TCCCCGATGCAGCAGCTGCTCCTTCACCTTGGTCCGGACCCCGGTACAGG
ACGGGGCGGATGGAACCTGCAGCAGCTGCTCCTTCACCTTGGTCCGGACC
CCGGTACAGGACGGGGCGGATGGAACCT
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