mRNA_H-paniculata_contig18904.4722.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18904.4722.1
Unique NamemRNA_H-paniculata_contig18904.4722.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 4.010e-87
Identity = 156/218 (71.56%), Postives = 183/218 (83.94%), Query Frame = 1 
Query:    4 VQTGKYVKK---RVKDKVSDAATTIKRGVGEGVSEVAEAVKVLTAAGSMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKVFPFVNSLDD---YTTSLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSIK 639
            V+TG+ +K+    VKD V      ++RGVGE VSEVA+AVKVLT AG MSGTGFVTFK L+ RACAV TLVTNRPEVFNL PAPEPRDIVWKNVTNHVI+V+NR+R VN GLA+GIIFWSV+VSGIQTLS+ +T+++VFP V    +   + TSL+ AY+PV +LL++IN LYFILK +ALHLEGYKTYSEVERAVMSRYFF+QLANVFVTIGAGSIK
Sbjct: 1383 VRTGRKMKRGVNEVKDTVKXXXNDLRRGVGESVSEVADAVKVLTKAGGMSGTGFVTFKCLSGRACAVSTLVTNRPEVFNLTPAPEPRDIVWKNVTNHVIHVQNRNRFVNLGLALGIIFWSVVVSGIQTLSKVETIAQVFPAVEKAAEENTFLTSLLEAYLPVTILLIIINLLYFILKWMALHLEGYKTYSEVERAVMSRYFFYQLANVFVTIGAGSIK 1600
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: A0A6H5KIL5_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL5_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.820e-79
Identity = 142/185 (76.76%), Postives = 162/185 (87.57%), Query Frame = 1 
Query:   94 SEVAEAVKVLTAAGSMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKVFPFVNSLDDYTT---SLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSIK 639
            SEVA+AVKV+T AG MSGTGFVTFK L+ RACAV TLVTNRPEVFNL PAPEPRDIVWKNVTNHVI+V+NR+RLVN GLA+GIIFWSV+VSGIQTLS+ DT+++VFP V    +  T   S + AY+PV +LL++IN LYFILK +ALHLEGYKTYSEVERAVMSRYFF+QLANVFVTIGAGSIK
Sbjct: 1172 SEVADAVKVVTKAGGMSGTGFVTFKCLSGRACAVSTLVTNRPEVFNLKPAPEPRDIVWKNVTNHVIHVQNRNRLVNLGLALGIIFWSVVVSGIQTLSKVDTIAQVFPAVEKAAEENTFLASFLEAYLPVTILLIIINLLYFILKWMALHLEGYKTYSEVERAVMSRYFFYQLANVFVTIGAGSIK 1356
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: A0A836CNV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV2_9STRA)

HSP 1 Score: 175 bits (444), Expect = 5.830e-47
Identity = 96/186 (51.61%), Postives = 133/186 (71.51%), Query Frame = 1 
Query:   88 GVSEVAEAVKVLTAAGSMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKVFPFVNSL---DDYTTSLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSI 636
            G   VAEAVK+LT  GSMS TGFVTFK+L+ARA AVQ++V + P V  +  APEPRD++W NVT H   ++ R   V+A + +G++ WS+IV GIQ L+   +L  +FP + +      +   L++ Y+PV+LLL+L+  LYFI KA+A  +EGYK+ SEVERAVM RYF+FQLANV+V++ +GSI
Sbjct:  930 GAQGVAEAVKILTV-GSMSATGFVTFKTLSARASAVQSVVVSLPGVLEVTAAPEPRDLIWPNVTRHHTQIKYRRMFVSAIVLVGLVCWSLIVIGIQALTSPASLDAIFPGIEAYAKAHPFMGDLLSTYLPVVLLLLLLQNLYFIFKALAKRVEGYKSESEVERAVMGRYFYFQLANVYVSVTSGSI 1114
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: K0SU52_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SU52_THAOC)

HSP 1 Score: 136 bits (343), Expect = 1.920e-33
Identity = 81/189 (42.86%), Postives = 122/189 (64.55%), Query Frame = 1 
Query:   79 VGEGVSEVAEAVKVLTAAGSMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKV--FPFVNSLDD-YTTSLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSI 636
            + + + EV ++V  +T    MS TGF++FK L+  ACAV+T + ++P+V  +  APEPRD++W+N   +  + R R    N  LA+G I WS+ V+ IQ L+  DTL+ V    ++ +L      S V  Y+PV+LLLV+I  L  I  AVAL+ E  KT S+V+R+V+ RYF++QLAN+F+T+ AGSI
Sbjct:  514 IQQNIDEVVDSVVGVT----MSSTGFISFKDLSTLACAVKTPLFHKPDVLVVRMAPEPRDLIWENAHVNQAWSRGREFTANTLLAVGAILWSIPVASIQALATVDTLASVTGMDWIQTLHGGRVASFVNGYLPVVLLLVIIMVLPHIFYAVALYYEDRKTQSDVQRSVIGRYFYYQLANIFITVTAGSI 698
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.310e-32
Identity = 77/165 (46.67%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:  139 MSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKVFPFVNSL--DDYTTSLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGA 627
            +S TGFVTF +LAA+A A Q LVT+RP      PAPEPRD+VWKN       V  R  + N  LA G I WSV ++ +Q  +  D LSK  P ++SL  D Y  +LV+ Y+PV++LL+LI  L  I   +A   E  KT S+V+ +VMSR+F++QLAN+++T+ A
Sbjct:  588 VSSTGFVTFNTLAAKAAASQLLVTHRPRTCRTYPAPEPRDVVWKNAAVPAGQVALRGIIANVLLAFGAILWSVPITALQAWTSMDQLSKWIPALDSLNHDGYLYTLVSGYLPVLVLLILIMLLPVIFTMIAQGYELRKTISDVQASVMSRFFYYQLANIYITVSA 752
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: A0A7S2NWW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWW9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.100e-31
Identity = 68/171 (39.77%), Postives = 111/171 (64.91%), Query Frame = 1 
Query:  136 SMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKVFPFVNSLDDYT----TSLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSI 636
            +M+ TGFV+F  L +   A    + ++PE+     +PEPRDI+WKN+  ++  V+ R    N  LA+G I WS+ ++ IQ L+  ++LS+V PF++ L   +    T+ +  Y+PV+ LL LI  L  I + VA++ E  KTYS+V+ ++++RYF++QLAN+F+T+ AGSI
Sbjct:   68 TMASTGFVSFTDLPSVCYAASAPLCHQPEMLQTSLSPEPRDIIWKNIQGNINLVKQREDAANFFLALGAILWSIPLTAIQALATAESLSRV-PFMSWLSTSSNLRLTAFINGYLPVVALLTLIMILPIIFEWVAVNYENRKTYSDVQNSILNRYFYYQLANIFITVTAGSI 237
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: B8C4F1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C4F1_THAPS)

HSP 1 Score: 125 bits (313), Expect = 1.900e-29
Identity = 72/189 (38.10%), Postives = 119/189 (62.96%), Query Frame = 1 
Query:   79 VGEGVSEVAEAVKVLTAAGSMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKV--FPFVNSLDDYTTS-LVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSI 636
            + + + EV ++V   T    MS TGF+TF+ L    CAV+T + ++P+V  +  APEPRDI+W+N   ++ + + R    N  L +G I WS+ V+ IQ L+  D ++ V    ++++L+    +  V  Y+PV+LLL +I  L F+   VALH E  KT S+V+++++ RYF++QLAN+++T+ AGSI
Sbjct:  365 IQQNIDEVVDSVVGAT----MSSTGFITFRDLQTVTCAVKTPLFDKPDVLVVSMAPEPRDIIWENCHVNLGWSKGREWTANMLLGLGAILWSIPVAIIQALATADQIATVPGMAWISTLNGGAVAGFVNGYLPVVLLLTIIMVLPFLFYVVALHYEDRKTQSDVQKSIIGRYFYYQLANIYITVTAGSI 549
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: A0A7S4V0U0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V0U0_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.770e-28
Identity = 69/170 (40.59%), Postives = 108/170 (63.53%), Query Frame = 1 
Query:  136 SMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKV--FPFVNSLDDYTT-SLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSI 636
            +MS  GFVTF  L++  C+    +T++P V  +  APE RDI+WKN       ++ R  L N  L++G I WS+ ++ IQ L+  D+L+++    ++ S D+ T   L+  Y+PV+ LL LI  L  I + VA+H EG KT S+V+ ++M RYF++QLAN+++T+ AGSI
Sbjct:  212 TMSTVGFVTFIDLSSVTCSCGAFLTHKPNVLEVQVAPETRDIIWKNAHIDKGVIQGRAFLANVLLSLGAILWSIPLAMIQALATADSLARIPGMEWILSFDEGTLRGLINGYLPVVALLSLIVILPIIFQWVAVHYEGRKTLSDVQASIMGRYFYYQLANIYITVTAGSI 381
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.130e-27
Identity = 72/181 (39.78%), Postives = 108/181 (59.67%), Query Frame = 1 
Query:  100 VAEAVKVLTAAGSMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKVFPFVNSLD--DYTTSLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSI 636
            VA  V  LT    MS TGFVTF+ +AA A + Q L+  RP+  +  PAP+PRD+VWKN+         R  +    +A G IFWS  V  IQ  +    L K+FP +  LD   +   ++  Y+PV+LLL     L F+ +A+A   E  K++SEV++++++RYF +Q+AN++VT+ +GSI
Sbjct:  520 VARGVLYLTLGQRMSTTGFVTFRQMAACAASRQVLLAPRPDWCDCEPAPDPRDVVWKNIAVPQPQNDLRQNVAAWLVAAGAIFWSFPVLLIQLWASYSELEKIFPVLADLDPDSFLYYVIAGYLPVVLLLXXXXLLPFLFQALAYRYERRKSHSEVQQSILTRYFTYQVANIYVTVASGSI 700
[Close]
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Match: A0A7S4VLS2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VLS2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 7.060e-27
Identity = 67/170 (39.41%), Postives = 102/170 (60.00%), Query Frame = 1 
Query:  136 SMSGTGFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVRNRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKV--FPFVNSLDDYT-TSLVTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQLANVFVTIGAGSI 636
            +MS TGFVTF  L    C  +  +++ P V     AP+PRDI W+N   +  +   R    N  L +G I WSV V+ IQ  +  D+L+ +  F ++ S D     S V  Y+PV+ LL +I  L  I + +A+H E  KTYS+VE+++++RYF++QLAN+++T+ AGSI
Sbjct:  686 TMSSTGFVTFTDLQTVTCGAKAPLSDDPRVLEANIAPDPRDIKWENAHINRSWSAGREWTANVALGVGAILWSVPVAAIQAWATADSLASIPGFEWIMSFDGGEFASFVNGYLPVVALLCIILILPIIFEWIAVHYENRKTYSDVEKSILTRYFYYQLANIYITVTAGSI 855
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18904.4722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMV8_ECTSI4.010e-8771.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL5_9PHAE1.820e-7976.76ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A836CNV2_9STRA5.830e-4751.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0SU52_THAOC1.920e-3342.86Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835ZAA7_9STRA2.310e-3246.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2NWW9_9STRA8.100e-3139.77Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
B8C4F1_THAPS1.900e-2938.10Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S4V0U0_9STRA2.770e-2840.59Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
D8LGF9_ECTSI5.130e-2739.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4VLS2_9STRA7.060e-2739.41Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18904contigH-paniculata_contig18904:188..4258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.1
Seed ortholog evalue1e-76
Seed eggNOG ortholog2880.D7FMV8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size639
Cds size639
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18904.4722.1prot_H-paniculata_contig18904.4722.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18904 188..4258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929452.8994844-CDS-H-paniculata_contig18904:187..3101622929452.8994844-CDS-H-paniculata_contig18904:187..310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 188..310 -
1691480867.7117977-CDS-H-paniculata_contig18904:187..3101691480867.7117977-CDS-H-paniculata_contig18904:187..310Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 188..310 -
1622929452.9104042-CDS-H-paniculata_contig18904:1833..19441622929452.9104042-CDS-H-paniculata_contig18904:1833..1944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 1834..1944 -
1691480867.7232733-CDS-H-paniculata_contig18904:1833..19441691480867.7232733-CDS-H-paniculata_contig18904:1833..1944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 1834..1944 -
1622929452.9218216-CDS-H-paniculata_contig18904:2373..25121622929452.9218216-CDS-H-paniculata_contig18904:2373..2512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 2374..2512 -
1691480867.7364762-CDS-H-paniculata_contig18904:2373..25121691480867.7364762-CDS-H-paniculata_contig18904:2373..2512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 2374..2512 -
1622929452.9412336-CDS-H-paniculata_contig18904:3320..34691622929452.9412336-CDS-H-paniculata_contig18904:3320..3469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 3321..3469 -
1691480867.7499797-CDS-H-paniculata_contig18904:3320..34691691480867.7499797-CDS-H-paniculata_contig18904:3320..3469Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 3321..3469 -
1622929452.9568238-CDS-H-paniculata_contig18904:4141..42581622929452.9568238-CDS-H-paniculata_contig18904:4141..4258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 4142..4258 -
1691480867.7585282-CDS-H-paniculata_contig18904:4141..42581691480867.7585282-CDS-H-paniculata_contig18904:4141..4258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18904 4142..4258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18904.4722.1

>prot_H-paniculata_contig18904.4722.1 ID=prot_H-paniculata_contig18904.4722.1|Name=mRNA_H-paniculata_contig18904.4722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MVQTGKYVKKRVKDKVSDAATTIKRGVGEGVSEVAEAVKVLTAAGSMSGT
GFVTFKSLAARACAVQTLVTNRPEVFNLIPAPEPRDIVWKNVTNHVIYVR
NRHRLVNAGLAMGIIFWSVIVSGIQTLSQKDTLSKVFPFVNSLDDYTTSL
VTAYMPVILLLVLINTLYFILKAVALHLEGYKTYSEVERAVMSRYFFFQL
ANVFVTIGAGSIK
back to top

mRNA from alignment at H-paniculata_contig18904:188..4258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18904.4722.1 ID=mRNA_H-paniculata_contig18904.4722.1|Name=mRNA_H-paniculata_contig18904.4722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4071bp|location=Sequence derived from alignment at H-paniculata_contig18904:188..4258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAGACGGGTAAATACGTGAAGAAGCGGGTAAAGGATAAGGTCTC
AGATGCTGCCACTACCATCAAGCGAGGTGTGGGAGAGGGCGTCAGCGAAG
TGGCGGAAGCTGTCAAGGTAGGTTATGCACAGGAGGTGTTAAGCCAGCCA
ACATCACCAAAATCACGAGGAGGTGGTGTTCATTTCACATGACTATATAT
TGGAGACGATGTGTGGAATATTCCAGACTATATTCGTAAAACTGCGCTCG
AAAAAAATGGAGCAAGTGAAAAACTGAAGGAAAAATCGGATCCTAGAGTA
TGACACCCCAAGTGTACAAAAAAAAACAAAAAACTCTCGAAACTTTCTGC
AACAACCCCAGTGGGAGAAAATACGAAATGCTTGGGGATCGGAAATCGGG
GCTTGGTACTTGTTATATTGCCGTGGGCTTAAGCTCCTTCAGCTTCCGGT
AATCGGAGGAGAACACTGTGTTTTAACGACCCATAGCAAGTCCCAAGGCT
TGACCTGAGAAGCTTAAGGTGCGAAAACCATAAGTGTATTGTCTTGCAGT
ATACTTTTTCGTAAATCAAACCTTCCCTCACAACGCTTCCGAGTGGTGCA
TACAGAGGGTGTACACTCTGGGGTGGAAAGGAAAAGACGAAAAGCGTCAG
CAAAAGTAGCGGAACCTGTGAAGGTCAGTACCGTAGTTTACAGGGTATAT
TACCCCGCTCTCTCATGCTATCCTCCCCCCCCCTCCCCCCCGCCTCAATG
CGTATGGCTCTATCTGCTCTATCCCGCATCATTCATCAGGTTTTGACGGC
GGCTGGAAGCATGTCTGGAACAGGGTTTGTCACGTTCAAAAGTCTCGCAG
CGCGCGCCTGCGCCGTCCAAACTCTGGTGACCAATCGACCTGAGGTGTTC
AATCTTATTCCGGCCCCGGAACCGCGAGACATCGTGTGGTGAGGCGGTGG
GAGTAGGGTTGGAGGGTAGGCGAGTATTACTGTGTCACTCGCATGTGTAC
TGTAGGTACCAAGCATGAAACAGGTTCCACATGAACGACAGGCAGGCACT
CTCGAAGTTTTCATTCGTAAGTCAGCCCTATTACAAGTCACATTCGGTTG
TATACATTATTTATCAGCAAAATTAGATCATGACCCATACGGGTAGAATA
TCCCAACTCACCCACCGCAAGCAAGCCTCCTTTACAAGTCAAAGGTTACC
CACGTGCCGCAGTTCGTAAAACGAAAAACGCTCGTAGAAGAACGCCATCA
TATCTATGTTGAGGTTTATGTCGCTGACCTCAAAGTCTGAGTTGTGTACA
TGTAGACTTGGTTACCAAAATTAGATGATGACCAATAGGAGGGAGGTCAC
CCATCTTGGGGGTTATGCAGGTTATCATACTATCGGGAAAGGGGGCGTGC
ATCGACTGCGCGCTGCACTGAAGGCTTTCTTGAGCACGACAACGGATGTG
CGCTGTTGAGACTGAAGTCAAGGTGGAATTATGTAGCTTGACGGCACTTG
CAGCTACTTGTACTTCTCAGCACCGATGGAGTATAATAATGGGGAGCGAG
TGGCTGTTTATTTTTTATTTTTTGGGGGGTACTTGTTTGCCTCGATGTGT
TTTTTTTTAAATGCACTTGGTACTCACTCGTACTCATTCGTATGGGTTTT
TAAAAGTCAAGTTTTGATCGTTGTCTTGGCGGAATATTGTGGTATATATT
ATCGATTCTTGCCCCTGTTTTTTTGTGATTGTTCGTCCGCGCGCAGGAAA
AATGTCACGAATCATGTAATTTACGTGCGGAATCGGCATCGGCTGGTGAA
CGCAGGGCTGGCCATGGGGATAATTTTTTGGTCCGTGATTGTATCCGGTA
TCCAGACGCTCTCACAAAAAGACACCCTTTCCAAGGTACCTTTGTTTGTT
GTCTTCCTATCGGTTTTATTTAGTGGTATACCCTTTTTTGTAATTGTAGT
TAAATACAGTACCGGCTTGCTGAACCGGTGGCAATACTCGGAGTTAAAAG
CTTTTTTTCTTTTTTTTTCCCTTTTTAATTCAAAACTTTTTCTCTAAGAA
ACTGTGCTCAACTTATGGTCCAACATAGATCTGTAGGAAACGGCTTGAAC
GCTATTGAGTGTTTGGGATTTGGGATTTTGGGACCGTGTAACCTGCAACT
GAATCAGTGTTGTACCTTTTTCATGATATTTGCGTCTTTTTGCGGTGCTT
CCGAGGATATACCTTTTTTTGTCATGCCTGCGGCGTACCTTTTTTGTGGT
GTTTTGGAGGGTGTACCCTTGCTGTGATTTTCTTTTTGTAATCTCATGTA
TTTACATTATACAGGTATTTCCGTTCGTGAATAGCTTGGACGATTACACT
ACTTCTCTCGTGACGGCGTACATGCCAGTTATTTTGCTGCTGGTGCTCAT
CAACACCCTCTACTTTATTCTGAAGGTATGTATGTATGTATGTATGTATG
CTATATGATATTTAGCAGTGTGTGGTGCCTAGTTATGTGTAAGTACGGCT
TTGTAAGAAAAGAAAAAAAAACGACTTGAATAAACAACGACTACTTGTAT
AATGACGAAATATGGAAAAAAAAAAATAAGTTTGTTTTGGTTCTCCGCTG
ACCCTTGAAGGATTTTGTCAGATTTAATATTCAGAATCCCTACCTCCCTT
TTGTTGTTATACATATATTTTCACTATCATAATATATATCTGGAAGAAAT
TCGGACAATTGATATTGAGGGGGGATGCGATTCCGATTTCAGATAGTTTT
GGTATAGGTTTAGTTAGTTCATTCGACACATTTCCCCCATTCCCCCCCCA
TTTCGAAAAAATCGGACGCAAAACTGCGTCGTGAGATGGGATTTGAAATG
CATCACTTTATCTGACCAGGGGTCGCATGGTGTTTTTCTTTTTGATACAT
TAGTCCAATCGCCCAGACCCACGATCAGTGAGAGCATAGAATTTCCCCTC
AGGTACATCTATATATACATACACACACACACATATACCTTGTCCGTTCA
GCAAGTAAAGGAACTTAGGTTTGACGCGCCATATCTCCTTCTCTACGGTG
ATTCACTGGGAGCTAGTGGTACCGATCGAAAGAGAGTTCCACGTAGATTC
GACTCAATACAACCAATAATAATAATTTCGAAGATTTCGGAAACAAAGAT
GAGCCGAAATCACCCATATTCCAGCCATTTTTGATAATCCTGGCCAACTT
TTTTATGTGCAACACAAGCACACAACACCACGATGGAGCTCGCCCCGGCG
ACCCCACCACGCCGCAGAGGCAAGGAGTTACGTCCCGGCAGGAGGTATGC
GCGTGCAGTCGACATCGCTAGGGCAATCAAGCCGAGTCTCTCGAATTACC
CGATGGCGAGCCGGCACGACTTGACGTAAAATTTTCGCTCTGGCCCAAAA
TGCATCTTTTTGGGGTGATTTTTGGGCTATTTTCTTTTTTTCTTTTTAGC
CGCTCTCGCACGCCGTGGGCTTCACGGATTCCAAATCTTCAAAAAAAAAA
AAAAAATAGACATTGTTAATGTTTCACACAAATGTAAGTTCCTTTACTTA
CTGAGCGAAGGAGATTTATATAAATTACACAAGGAATCAACAAAGGACCG
AAAAAAAACGGCCTGTCTACTACTCTCTGCCACGTAACACGTAAAACCAG
AACAGGTAATTGGTAAAACGCACGAGCTGTGTGAAATATTTTGGACGACG
ACCTGAACTTTACGGCGTTTTTACAGCTTAATTGATATTTGATATACTAA
TATATGTATGTATATATATATACATACATATACAACTTCACCACACTGCC
ACTCCTCTCGTAGCAAGCACATCCCACAGGTATAGCAACTGCGTGAAATA
GGTCATGCTCGTGCTTGTTTAGTACTCGTAGCTGATCCAACTGGCGTCAC
GAGGAAGATACAATTCGTGACTCTGGACTGGATCATGACAATTAACAGGC
GGTGGCGTTGCACCTGGAGGGATACAAGACGTATAGCGAGGTGGAGCGTG
CGGTTATGAGTCGATATTTCTTTTTCCAGCTGGCGAATGTATTCGTCACA
ATCGGTGCAGGATCTATCAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18904:188..4258-

>mRNA_H-paniculata_contig18904.4722.1 ID=mRNA_H-paniculata_contig18904.4722.1|Name=mRNA_H-paniculata_contig18904.4722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig18904:188..4258- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCAGACGGGTAAATACGTGAAGAAGCGGGTAAAGGATAAGGTCTC
AGATGCTGCCACTACCATCAAGCGAGGTGTGGGAGAGGGCGTCAGCGAAG
TGGCGGAAGCTGTCAAGATGGTGCAGACGGGTAAATACGTGAAGAAGCGG
GTAAAGGATAAGGTCTCAGATGCTGCCACTACCATCAAGCGAGGTGTGGG
AGAGGGCGTCAGCGAAGTGGCGGAAGCTGTCAAGGTTTTGACGGCGGCTG
GAAGCATGTCTGGAACAGGGTTTGTCACGTTCAAAAGTCTCGCAGCGCGC
GCCTGCGCCGTCCAAACTCTGGTGACCAATCGACCTGAGGTGTTCAATCT
TATTCCGGCCCCGGAACCGCGAGACATCGTGTGGTTTTGACGGCGGCTGG
AAGCATGTCTGGAACAGGGTTTGTCACGTTCAAAAGTCTCGCAGCGCGCG
CCTGCGCCGTCCAAACTCTGGTGACCAATCGACCTGAGGTGTTCAATCTT
ATTCCGGCCCCGGAACCGCGAGACATCGTGTGGAAAAATGTCACGAATCA
TGTAATTTACGTGCGGAATCGGCATCGGCTGGTGAACGCAGGGCTGGCCA
TGGGGATAATTTTTTGGTCCGTGATTGTATCCGGTATCCAGACGCTCTCA
CAAAAAGACACCCTTTCCAAGGAAAAATGTCACGAATCATGTAATTTACG
TGCGGAATCGGCATCGGCTGGTGAACGCAGGGCTGGCCATGGGGATAATT
TTTTGGTCCGTGATTGTATCCGGTATCCAGACGCTCTCACAAAAAGACAC
CCTTTCCAAGGTATTTCCGTTCGTGAATAGCTTGGACGATTACACTACTT
CTCTCGTGACGGCGTACATGCCAGTTATTTTGCTGCTGGTGCTCATCAAC
ACCCTCTACTTTATTCTGAAGGTATTTCCGTTCGTGAATAGCTTGGACGA
TTACACTACTTCTCTCGTGACGGCGTACATGCCAGTTATTTTGCTGCTGG
TGCTCATCAACACCCTCTACTTTATTCTGAAGGCGGTGGCGTTGCACCTG
GAGGGATACAAGACGTATAGCGAGGTGGAGCGTGCGGTTATGAGTCGATA
TTTCTTTTTCCAGCTGGCGAATGTATTCGTCACAATCGGTGCAGGATCTA
TCAAAGCGGTGGCGTTGCACCTGGAGGGATACAAGACGTATAGCGAGGTG
GAGCGTGCGGTTATGAGTCGATATTTCTTTTTCCAGCTGGCGAATGTATT
CGTCACAATCGGTGCAGGATCTATCAAA
back to top