mRNA_H-paniculata_contig189.4715.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig189.4715.1
Unique NamemRNA_H-paniculata_contig189.4715.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A6H5JNW3_9PHAE (PlsC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW3_9PHAE)

HSP 1 Score: 423 bits (1088), Expect = 5.540e-144
Identity = 210/289 (72.66%), Postives = 242/289 (83.74%), Query Frame = 1
Query:  388 PLEWPAWVWVIIALSTLIVAWFMLFAVAMYLQELKSYAG--RVSFVKMMAFALTWMTASLWTSVACIPELLLGRYNEAAERAHYYGSLMGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSKERSKITVHKPIRPGDPEFKDVATLRQHCFATVT--------MLEKQALEK 1224
            P +WP W WV + +  L+  +F+LFAVAMYLQELKSY G  RVSF KM+AF+LTWM  SL  S  CIP+LLLGR   AAE+ HYYGS+MGQ MFRI+S+PP+V GLENLPPD EKGMVYVSNHQTS+DIA+FYYIGAERKFSWVSKSTVFLIPGVG LMKIA YVALTRG+R+SV+KMF+DCKERLA GWSVMIFPQGTRRRLK+LDFKDGAFQLA+D+NS +VPFTL LPE+LF G ++R+KITVH+P+RPGDP FKDVATLR+HCF TV         MLE Q  +K
Sbjct:   43 PSQWPRWAWVCLGVWVLLSCYFLLFAVAMYLQELKSYGGASRVSFPKMLAFSLTWMNGSLLCSALCIPDLLLGRRERAAEKVHYYGSIMGQLMFRILSKPPVVIGLENLPPDGEKGMVYVSNHQTSVDIALFYYIGAERKFSWVSKSTVFLIPGVGLLMKIAGYVALTRGNRDSVKKMFDDCKERLAAGWSVMIFPQGTRRRLKVLDFKDGAFQLAIDSNSVVVPFTLDLPENLFHGPRQRTKITVHEPVRPGDPAFKDVATLRKHCFDTVMGALPYAEGMLEDQRKQK 331          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: D8LS64_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS64_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 1.960e-108
Identity = 160/213 (75.12%), Postives = 183/213 (85.92%), Query Frame = 1
Query:  646 MGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSKERSKITVHKPIRPGDPEFKDVATLRQHCFATVTMLEKQALEKAAXXXXXXXXNPPPETKKTQ 1284
            MGQ MFRI+S+PP+V GLENLP D EKGMVYVSNHQTS+DIA+FYYIGAERKFSWVSKSTVFLIPGVG LMKIA YVALTRG+R+SV+KMF+DCKERLA GWSVMIFPQGTRRRLK+LDFKDGAFQLA+D+NS +VPFTL LPE+LF G ++R+KITVH+PIRPGDP FKDVATLR+HCF TV   +K+A   AA         P  E+KKT+
Sbjct:    1 MGQLMFRILSKPPVVIGLENLPSDGEKGMVYVSNHQTSVDIALFYYIGAERKFSWVSKSTVFLIPGVGLLMKIAGYVALTRGNRDSVKKMFDDCKERLAAGWSVMIFPQGTRRRLKVLDFKDGAFQLAIDSNSVVVPFTLDLPENLFHGPRQRTKITVHEPIRPGDPAFKDVATLRKHCFDTVMRKQKEAAAAAAMAGEGAGSTPVIESKKTK 213          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A835YS94_9STRA (PlsC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS94_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.110e-62
Identity = 113/238 (47.48%), Postives = 157/238 (65.97%), Query Frame = 1
Query:  547 MTASLWTSVACIPELLLGRYNEAAERAHYYGSLMGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDC-KERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLF-FGSKERSKITVHKPIRPGDPEFKDVATLRQHCFATVT--------MLEKQALEKAA 1230
            MT S   S+  IP LL+G+   A E  HY G ++ + + RI   P ++ G+ENLPP  E   VYV+NHQ+++DIA+F+ I   R ++WVSK++VFL+PGVG LM++A YV+L RG + S +KM  DC K+ L +GWSV+IFPQGTRRR KILDFK GAF+LA +    +VP T+ LPE ++  G K+R ++ +HKPI P DP F+D   L  H F T+         ML++Q  + AA
Sbjct:    1 MTLSFLGSLPAIPLLLIGQRKRARELTHYNGGVIARTLQRICFYPSVITGMENLPPP-ETACVYVANHQSTVDIAVFFAI--RRNYAWVSKASVFLVPGVGLLMRLAGYVSLQRGSKESGKKMMEDCRKDCLEKGWSVVIFPQGTRRRHKILDFKMGAFKLAQEARVPIVPVTIELPEKMYGIGCKDRPRLIIHKPIAPDDPLFQDRDALLAHTFGTIVGALSYGPAMLQRQRADAAA 235          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A7S2UZR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZR3_9STRA)

HSP 1 Score: 182 bits (463), Expect = 5.480e-51
Identity = 110/291 (37.80%), Postives = 168/291 (57.73%), Query Frame = 1
Query:  391 LEWPAWVWVIIALS-TLIVAWFMLFAVAMYLQELKSYAGRVSFVKMMAFALTWMTASLWTSVACIPELLLGRYN----EAAERAHYYGSLMGQFMFRIVSRPPIVEGLENLPP---DSEKG------MVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERL-----------AEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSKERS----KITVHKPIRPGDPEFKDVATLRQ 1176
            +EWP  + +++ L   L   W +++  A+YLQE+K+Y  +V  ++   F L W+  S +  +   P  +   +     +     H    ++ ++MFR     P V G+ENLP    D  +G      ++YV NHQ+ +DIA+FY++  ER+F+WVSKSTVF IPGVG +M +A+Y+ L RG   S+ KMF  C++ L           A+ +SV IFPQGTRRR ++L FK GAFQLA++T   +VP T++LP D++F    R     K+ VHKP+ P D  FK +  +R+
Sbjct:    1 MEWPEVLGLVLGLIFVLFFIWALVYVFAIYLQEMKTYK-KVHVLRFSLFTLKWIYGSAYFVICLFPTWVSVGFQAFHPKVRALGHKKAGVLARWMFRSTFHEPEVVGMENLPAIPEDKGRGKFEHDAVIYVVNHQSMIDIALFYFV--ERRFAWVSKSTVFTIPGVGWIMTMAQYIPLERGKGESIAKMFGLCRKSLGASPEGDNTKKADSFSVTIFPQGTRRRFELLPFKAGAFQLAMETGCRVVPITMYLPPDIWFNPSARGGDKCKLIVHKPMDPKD--FKTMEAMRE 286          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A024U0I6_9STRA (PlsC domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0I6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.540e-45
Identity = 98/236 (41.53%), Postives = 140/236 (59.32%), Query Frame = 1
Query:  439 IVAWFMLFAVAMYLQELKSYAGRVSFVKMMAFALTWMTASLWTSVACIPELLLGRYNEAAERAHYYGSLMGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSK-ERSKITVHKPIRPGD 1143
            +VA F+  AV M   E K      +  K++ F L W+  S    +  +P   +   NE    AH    ++ + +  +   P +VEG  N+ PD  K  + V+NHQT +DI   Y++G    FSWVSKS +FLIPG G LMK+A YV LTR ++ SV +MF   K+R A GWSV++FPQGTRRR + L FKDGAF LAVD N  ++P T+ +P+DL+  ++  + K+ + KPI  G+
Sbjct:    9 VVAAFISIAVFMIYFEEKKLFVNFAHGKILLFGLFWVIVSWIEFMLILPLKFVVAPNELHIVAHETCMVVARTLHVLFFGPVVVEGRMNVNPD--KVYMIVANHQTMMDITSLYFLGGN--FSWVSKSIIFLIPGAGWLMKLANYVPLTRKNKTSVLRMFELAKDRFAHGWSVVVFPQGTRRRTEFLPFKDGAFDLAVDANVEILPVTIIIPDDLWTWNRLGKVKLVIGKPIAVGN 240          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: W4G7D7_9STRA (PlsC domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7D7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.790e-43
Identity = 97/245 (39.59%), Postives = 141/245 (57.55%), Query Frame = 1
Query:  463 AVAMYLQELKSYAGRVSFVKMMAFALTWMTASLWTSVACIPELLLGRYNEAAERAHYYGSLMGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSK-ERSKITVHKPIRPGDPEFKDVATLRQHCFATV 1194
            AV M   E K +   ++  K++ F L W+  S       +P  L+   NE    AH    ++ + +  +   P +VEG  N  PD E  M+ V+NHQT +DI   Y++G    FSWVSKS +FLIPG G LMK+A YV LTR ++ SV +MF   ++R A GWSV++FPQGTRRR + L FKDGAF LA+     ++P T+ +P+DL+  ++  + K+ + KPI   D   ++   L+Q  F  V
Sbjct:   17 AVFMIYYEEKKHFANIAHGKILLFGLFWVLVSALQFALVLPLKLVLAPNELHIVAHETCQVVARSLHVLFFGPVVVEGRPNANPD-EVYMI-VANHQTMMDITSLYFLGGN--FSWVSKSIIFLIPGAGWLMKLANYVPLTRKNKTSVLRMFELARDRFANGWSVVVFPQGTRRRTEFLPFKDGAFDLAIGAKVRVLPVTIIIPDDLWTWNRLGKVKLVIGKPIAIEDGMTRE--QLKQKAFDVV 255          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A7S3UUT6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUT6_HETAK)

HSP 1 Score: 158 bits (399), Expect = 3.530e-42
Identity = 80/191 (41.88%), Postives = 116/191 (60.73%), Query Frame = 1
Query:  625 AHYYGSLMGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSKERS-KITVHKPIRPGDPEFKDVATLRQHCFATV 1194
            A Y G  +G +MF+ +   P V G ENLP D +  +++  NHQ+ +DIA+ Y++  E +F+WVSKS  F +PG+GSLM +++++ + RGD+ S   MF  C + +A   SV IFPQGTR R  +  FK GAF LA D   T+VP TL+LPED++      + ++T+H PI P      D   LR+ C   V
Sbjct:   29 ALYRGQQLGLWMFKSIFGQPQVAGKENLPKDQDTAVIFAVNHQSMIDIALLYFV--EHRFAWVSKSAAFSLPGIGSLMSLSQFIRIIRGDKKSAVNMFQGCVKTMASNASVAIFPQGTRDRRSVRPFKHGAFSLAADHGYTIVPCTLYLPEDIWSRPNGAACRLTIHPPIPPSA----DKEALRRKCAEVV 213          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A7S3Y3G5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3G5_HETAK)

HSP 1 Score: 157 bits (397), Expect = 1.590e-41
Identity = 82/216 (37.96%), Postives = 134/216 (62.04%), Query Frame = 1
Query:  448 WFMLFAVAMYLQELKSYAGRVSFVKMMAFALTWMTASLWTSVACIPELLLGRYNEAAE---RAHYYGSLMGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLF 1086
            W    A  MY QE +SY G V F +   F+L  +  S+   V  +P ++  R  ++ +    A      + + +FR     P+V+GLENLP + ++ +V+V NHQ+ +D+A+ +++  +R+F++VSK+  FL+PG G+LM++  +V L RG++ S+ +MF  C + +    +++IFPQGTR+R + + FKDGAF  AVD N T+VP TL LP DL+
Sbjct:   52 WVFFAAYMMYRQERRSY-GEVGFARAFFFSLFCLYGSMICCVLVLPVIVFERGTKSVKVRNTAFQKNQQVSKKIFRFFFGDPVVQGLENLPQEGDRPVVFVMNHQSMVDVALSFFL--DRRFAFVSKAITFLLPGAGTLMRLCHFVPLKRGNKASILRMFEKCAQAMESDCNIVIFPQGTRKRHEWVPFKDGAFSFAVDNNYTVVPVTLALPADLW 264          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A1V9Y590_9STRA (PlsC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y590_9STRA)

HSP 1 Score: 157 bits (396), Expect = 2.690e-41
Identity = 87/238 (36.55%), Postives = 137/238 (57.56%), Query Frame = 1
Query:  466 VAMYLQELKSYAGRVSFVKMMAFALTWMTASLWTSVACIPELLLGRYNEAAERAHYYGSLMGQFMFRIVSRPPIVEGLENLPP-DSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSKERS-KITVHKPIRPGDP---EFKDVA 1164
            V +Y +E K +  +   +K++ F   W++ S+      +P  L+   +E    AH     + + +      P  VEG  NL     ++ +++V+NHQT +DI   Y++     F+WV+KS +F +PG G +MK+A YV L R +++S+  MF  C+ERLA  WSV++FPQGTR R   L FKDGAF +A  TN  +VP T+ +P+DL+  ++  + K+ VH+P  P D    E K+VA
Sbjct:   28 VGIYFEEKKLFQKKEP-LKIIMFGFFWLSFSILNFALVLPLKLIVAQSELEIIAHEACQFLARTLHVAFFGPVAVEGQNNLKALKPDEAVLFVANHQTMMDITTLYFLPTN--FAWVAKSVIFYMPGAGWMMKLANYVPLKRKNKDSIANMFKACQERLANKWSVIVFPQGTRNRSTFLPFKDGAFDIAKTTNVRIVPLTIVIPDDLWMWNRRGACKLVVHEPYSPVDKTKEELKEVA 262          
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Match: A0A485LJH2_9STRA (Aste57867_21395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJH2_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.180e-38
Identity = 77/155 (49.68%), Postives = 108/155 (69.68%), Query Frame = 1
Query:  679 PPIVEGLENLPPDSEKGMVYVSNHQTSLDIAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKMFNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTLFLPEDLFFGSKE-RSKITVHKPIRPG 1140
            P +VEG E++ P+ E  M+ V+NHQT +DI   Y++  +  FSWVSKS++FL+PG G +MK+A YV LTR  ++SV KMF   K+R   GWSV IFPQGTR+R + L FKDGAF LAV  N  ++P T+ +P+DL+  ++  + K+ VHKP+  G
Sbjct:   89 PVVVEGKEHMNPN-EVYMI-VANHQTMMDITALYHL--DGNFSWVSKSSIFLLPGAGWIMKLANYVPLTRKSKDSVLKMFEAAKDRFHNGWSVCIFPQGTRQRGEFLPFKDGAFDLAVTANVRVLPVTVIIPDDLWAWTRPGKVKLIVHKPLEKG 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig189.4715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNW3_9PHAE5.540e-14472.66PlsC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LS64_ECTSI1.960e-10875.121-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A835YS94_9STRA1.110e-6247.48PlsC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2UZR3_9STRA5.480e-5137.80Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A024U0I6_9STRA1.540e-4541.53PlsC domain-containing protein n=2 Tax=Aphanomyces... [more]
W4G7D7_9STRA1.790e-4339.59PlsC domain-containing protein n=5 Tax=Aphanomyces... [more]
A0A7S3UUT6_HETAK3.530e-4241.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y3G5_HETAK1.590e-4137.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9Y590_9STRA2.690e-4136.55PlsC domain-containing protein n=1 Tax=Thraustothe... [more]
A0A485LJH2_9STRA2.180e-3849.68Aste57867_21395 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig189contigH-paniculata_contig189:15907..19219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue7.5e-87
Seed eggNOG ortholog2880.D8LS64
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655,ko:K13509
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,ko04975,map00561,map00564,map01100,map01110,map04072,map04975
KEGG ModuleM00089
Hectar predicted targeting categorysignal anchor
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010154,GO:0019637,GO:0022414,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090407,GO:1901576
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG2848@2759
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-12_004670.1
EC2.3.1.51
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons3
Model size1287
Cds size972
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig189.4715.1prot_H-paniculata_contig189.4715.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig189 16222..19219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929452.0208502-UTR-H-paniculata_contig189:15906..162211622929452.0208502-UTR-H-paniculata_contig189:15906..16221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig189 15907..16221 +
1691480867.30097-UTR-H-paniculata_contig189:15906..162211691480867.30097-UTR-H-paniculata_contig189:15906..16221Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig189 15907..16221 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929452.038581-CDS-H-paniculata_contig189:16221..169561622929452.038581-CDS-H-paniculata_contig189:16221..16956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig189 16222..16956 +
1691480867.314491-CDS-H-paniculata_contig189:16221..169561691480867.314491-CDS-H-paniculata_contig189:16221..16956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig189 16222..16956 +
1622929452.0558221-CDS-H-paniculata_contig189:18353..185001622929452.0558221-CDS-H-paniculata_contig189:18353..18500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig189 18354..18500 +
1691480867.3245113-CDS-H-paniculata_contig189:18353..185001691480867.3245113-CDS-H-paniculata_contig189:18353..18500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig189 18354..18500 +
1622929452.0693002-CDS-H-paniculata_contig189:19129..192191622929452.0693002-CDS-H-paniculata_contig189:19129..19219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig189 19130..19219 +
1691480867.334195-CDS-H-paniculata_contig189:19129..192191691480867.334195-CDS-H-paniculata_contig189:19129..19219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig189 19130..19219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig189.4715.1

>prot_H-paniculata_contig189.4715.1 ID=prot_H-paniculata_contig189.4715.1|Name=mRNA_H-paniculata_contig189.4715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MAKQAPLSDEQSSLGALFAAAAAGPLEWPAWVWVIIALSTLIVAWFMLFA
VAMYLQELKSYAGRVSFVKMMAFALTWMTASLWTSVACIPELLLGRYNEA
AERAHYYGSLMGQFMFRIVSRPPIVEGLENLPPDSEKGMVYVSNHQTSLD
IAMFYYIGAERKFSWVSKSTVFLIPGVGSLMKIARYVALTRGDRNSVRKM
FNDCKERLAEGWSVMIFPQGTRRRLKILDFKDGAFQLAVDTNSTLVPFTL
FLPEDLFFGSKERSKITVHKPIRPGDPEFKDVATLRQHCFATVTMLEKQA
LEKAAAAASSAGANPPPETKKTQ*
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mRNA from alignment at H-paniculata_contig189:15907..19219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig189.4715.1 ID=mRNA_H-paniculata_contig189.4715.1|Name=mRNA_H-paniculata_contig189.4715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3313bp|location=Sequence derived from alignment at H-paniculata_contig189:15907..19219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGGGCCCTGTGCAGCGCGTGCTCGCAAGAGGCCAGCTACTCTTTACAG TTAGGTTGTGATAGTAGGATATCAATACCCGGCACGGGTTACAGTGTTCT TTTTTCTGCTAGGTCAGCGAATTAAGCACTGCACCGACGCAAAGTCGCTC AAATTTCTATTTTACTTTGGTCCGTGCCCTATTATATAGCTCCGTACTGC AACTCTCATTTGGAAGGAAGACAAAACAGGCAGCGAGGGAGGCTCGCTGT ACTGACCGACTTGACTGTCCAGGCGGCGCGCTCTATTTCATCGAGCATAC ACTGTTCCCGGAACGATGGCTAAGCAGGCGCCATTATCTGATGAGCAGAG CAGCCTTGGAGCCCTGTTTGCTGCCGCGGCGGCGGGCCCACTAGAATGGC CCGCATGGGTATGGGTTATCATCGCGTTATCAACTTTGATTGTGGCCTGG TTCATGCTGTTTGCTGTTGCCATGTACCTCCAAGAGCTCAAGTCCTACGC GGGCAGAGTGAGCTTCGTCAAGATGATGGCGTTCGCTTTAACGTGGATGA CGGCTAGCCTGTGGACGTCGGTCGCTTGCATCCCAGAACTCCTGCTGGGC CGCTACAACGAAGCCGCGGAGCGTGCGCATTACTACGGAAGCCTCATGGG TCAGTTTATGTTCCGCATAGTGTCCCGGCCCCCGATAGTCGAAGGCCTCG AGAACCTGCCTCCCGACAGTGAAAAGGGGATGGTCTACGTGTCCAACCAC CAGACGTCGCTGGACATCGCAATGTTCTACTATATCGGAGCGGAGCGCAA GTTTTCGTGGGTGAGCAAGAGCACCGTGTTCCTGATCCCAGGCGTGGGGT CGCTTATGAAGATCGCTCGGTACGTGGCGCTGACAAGGGGGGACCGCAAC AGCGTACGGAAGATGTTCAACGACTGCAAGGAGAGGCTCGCCGAGGGGTG GTCGGTCATGATTTTCCCCCAGGGCACCCGGCGCCGACTGAAAATACTGG ACTTCAAGGACGGGGCGTTTCAGCTCGCCGTGGACACCAACAGCACGTTG GTGCGTCTATATCTGTTTTTTGTTTCTGTAAAAGGTATTCTGCTAATGTA TGTAGATGCTGATGCAGTAAGTGCCTTATTCTCTCGATGAATACAAAAAT GACTTCAGTCAATGAAAACCCTAACTGAGGTAGACTGCTAAAATTAAGCG AATCAGTCAAGAACCAAATTTGTGTCTTGTTCTTGTGGAATCAAAGAGGG TTTTTCCAAAACAATTTCGATTCGCGTTTTGGGATTTTGGAAACTATGGT CATTATGACTCCCAAGATCGCATGCAGTATGGTAATCTGATTGTTCATCG AGGTCGCCGACTGCTGTGGCTTCGTCAAATACGCTTCATGCAAACCCTTT AGGCCGACGTCAATCCAAAATCCAGAAACAGCTCGTTTTTGTGCAACATT ACAAAACAAAGATTGGCGGGCTCTTTTGTCGGATCAAAAGTGGTAAAAGA ATATGTAGATATTCAGACCTTGGAAAGCGTTTTTACTCCGGGAACTGGGG GTCACTAGACCATTCGATTAGAGAAATTTGAGGTGTTTCATGGTACAAAA ATCACAACAGTTTTCTGTTTCCACCTCAAATTCTGTCAAGCGGAAATGAG CTAACCGCTTCCGGCTAGACTCTATTTGCCCACCTTTTTTTCTCGATGTC ATCGTCACGTCAATTACATTTTTTTGCTTGAAACGATGAATGGGAGTTCA TACCCATATTGCACCGTTTTCGCTATTGCACAAGCCGGCCCGTGCAAAGG GGGAGGCGTTAACCCATGTGACATAGTTAACTGAACTATTGTATCGCTGG AAAATAACTCCATCATCGTATCCATGTTGAGGATACGCAGCTGACCTCAA CATTCAGGTGTGTACACTTACCAGCAAAATTGAATCAACTAGGGGGCGAC CGTCACTTTTCATATATGAGGTAGCAGTGTGCAATGACGTACACGCGTTT TATGGTGACTTTGTTTACCCCTATAATCGTGGATATTCGTCTACTACATG CATCGTCATGAACAAATATTCGAATGAAAAAGAGAGCCGTACGTTGCTCT GATTGGTTTTCGCACGGCGCACACCGCTTTTTCACACGCCAAGTATATGA CGGTCGGAGTGTACGATGCGAGACATATGGAGTCGACGGTGTTGGGCACC ACTGGTCCACTTCTATTGCTCCGTACCTTCTTCGCTCGCGGCTTTATTGA CGGCTCGAATTGACTACACTTGATTCAAGCATGAAAATTATCACCGCAAG GTGCCTCTTGGACGCCTCACGGTCCGATCCGATTCTTGACTTTGTTTATG CTGTCTCCAAAACGTTTGGCCGAATTTCCCCTTTTTTTGTTGTCTACTGG TGCTAATGAGTATAGGTATATACAATGCCCTCCCTCCCCCACCCCAGGTT CCTTTCACGCTTTTTCTGCCGGAAGACCTCTTCTTCGGGTCGAAGGAACG CTCAAAGATTACGGTGCACAAGCCCATTCGTCCTGGAGACCCCGAGTTCA AGGACGTGGCAACGTTGCGTCAGCACTGCTTCGCGACCGTGACGGTAAGC GAGGCGAATGCTTTTGTGGTGTGGTGGCAGCAGCAGCTGGTTGGAGCGTG TTCGTGTGTCTGTATGTCTTTTATGTATCTATTGCATGCGTATGATCCGT GTGCGAGACTGCATGTACATATTACAGTACACTATAGTCCTGTATCTATT TTTGTGCTGTCTACAGTAAGTGTGGTTGTTTTCTCGCGGCCACATCGCCA ACGCCCCCCCCCCCCCCGACATGCTGCAAAATAAAAGGATTAGCACTGGA ATTATTTACCTGACCGTTACAAAATATGAATGTAGTTAATTAGAGCTATG TCACAAGGTCAATAAAGGTTCCAATCTTGTGTTAGGATCCTTCTCCCTTT CCCTCCCCTCCCCTATATCATCTTGGTCCGGCAACAACACCCGGGACATC GATGATGAGTGCGTGCGCCCTCTGCTTGACCGAAGAACACCTCGCACCGA GGTACACTCCAGTACTGAACTGATGAGCGTTTTGCGTTCAAACAATATTT GTGTATTACCAGGTATGTTGTATGCATGCTTTATGAAGGGACCCGTGTAA CCGCAATTCCCTACCCTTTCCATTTCGCCTTTGACTTGTCTGTGCGAAGG GAGCGCTTCCGTATGCCAAGGAGATGTTGGAGAAACAGGCATTAGAGAAG GCGGCGGCGGCGGCAAGTTCGGCAGGGGCAAACCCACCACCAGAGACGAA AAAGACACAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig189:15907..19219+

>mRNA_H-paniculata_contig189.4715.1 ID=mRNA_H-paniculata_contig189.4715.1|Name=mRNA_H-paniculata_contig189.4715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig189:15907..19219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAGCAGGCGCCATTATCTGATGAGCAGAGCAGCCTTGGAGCCCT
GTTTGCTGCCGCGGCGGCGGGCCCACTAGAATGGCCCGCATGGGTATGGG
TTATCATCGCGTTATCAACTTTGATTGTGGCCTGGTTCATGCTGTTTGCT
GTTGCCATGTACCTCCAAGAGCTCAAGTCCTACGCGGGCAGAGTGAGCTT
CGTCAAGATGATGGCGTTCGCTTTAACGTGGATGACGGCTAGCCTGTGGA
CGTCGGTCGCTTGCATCCCAGAACTCCTGCTGGGCCGCTACAACGAAGCC
GCGGAGCGTGCGCATTACTACGGAAGCCTCATGGGTCAGTTTATGTTCCG
CATAGTGTCCCGGCCCCCGATAGTCGAAGGCCTCGAGAACCTGCCTCCCG
ACAGTGAAAAGGGGATGGTCTACGTGTCCAACCACCAGACGTCGCTGGAC
ATCGCAATGTTCTACTATATCGGAGCGGAGCGCAAGTTTTCGTGGGTGAG
CAAGAGCACCGTGTTCCTGATCCCAGGCGTGGGGTCGCTTATGAAGATCG
CTCGGTACGTGGCGCTGACAAGGGGGGACCGCAACAGCGTACGGAAGATG
TTCAACGACTGCAAGGAGAGGCTCGCCGAGGGGTGGTCGGTCATGATTTT
CCCCCAGGGCACCCGGCGCCGACTGAAAATACTGGACTTCAAGGACGGGG
CGTTTCAGCTCGCCGTGGACACCAACAGCACGTTGATGGCTAAGCAGGCG
CCATTATCTGATGAGCAGAGCAGCCTTGGAGCCCTGTTTGCTGCCGCGGC
GGCGGGCCCACTAGAATGGCCCGCATGGGTATGGGTTATCATCGCGTTAT
CAACTTTGATTGTGGCCTGGTTCATGCTGTTTGCTGTTGCCATGTACCTC
CAAGAGCTCAAGTCCTACGCGGGCAGAGTGAGCTTCGTCAAGATGATGGC
GTTCGCTTTAACGTGGATGACGGCTAGCCTGTGGACGTCGGTCGCTTGCA
TCCCAGAACTCCTGCTGGGCCGCTACAACGAAGCCGCGGAGCGTGCGCAT
TACTACGGAAGCCTCATGGGTCAGTTTATGTTCCGCATAGTGTCCCGGCC
CCCGATAGTCGAAGGCCTCGAGAACCTGCCTCCCGACAGTGAAAAGGGGA
TGGTCTACGTGTCCAACCACCAGACGTCGCTGGACATCGCAATGTTCTAC
TATATCGGAGCGGAGCGCAAGTTTTCGTGGGTGAGCAAGAGCACCGTGTT
CCTGATCCCAGGCGTGGGGTCGCTTATGAAGATCGCTCGGTACGTGGCGC
TGACAAGGGGGGACCGCAACAGCGTACGGAAGATGTTCAACGACTGCAAG
GAGAGGCTCGCCGAGGGGTGGTCGGTCATGATTTTCCCCCAGGGCACCCG
GCGCCGACTGAAAATACTGGACTTCAAGGACGGGGCGTTTCAGCTCGCCG
TGGACACCAACAGCACGTTGGTTCCTTTCACGCTTTTTCTGCCGGAAGAC
CTCTTCTTCGGGTCGAAGGAACGCTCAAAGATTACGGTGCACAAGCCCAT
TCGTCCTGGAGACCCCGAGTTCAAGGACGTGGCAACGTTGCGTCAGCACT
GCTTCGCGACCGTGACGGTTCCTTTCACGCTTTTTCTGCCGGAAGACCTC
TTCTTCGGGTCGAAGGAACGCTCAAAGATTACGGTGCACAAGCCCATTCG
TCCTGGAGACCCCGAGTTCAAGGACGTGGCAACGTTGCGTCAGCACTGCT
TCGCGACCGTGACGATGTTGGAGAAACAGGCATTAGAGAAGGCGGCGGCG
GCGGCAAGTTCGGCAGGGGCAAACCCACCACCAGAGACGAAAAAGACACA
ATGAATGTTGGAGAAACAGGCATTAGAGAAGGCGGCGGCGGCGGCAAGTT
CGGCAGGGGCAAACCCACCACCAGAGACGAAAAAGACACAATGA
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