mRNA_H-paniculata_contig18898.4714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18898.4714.1
Unique NamemRNA_H-paniculata_contig18898.4714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: D7FN42_ECTSI (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN42_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 2.690e-58
Identity = 91/113 (80.53%), Postives = 101/113 (89.38%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYGDKKGSLE 339
            VLE PA+ +  SF+SEIVASISDIKST DGRYI SRDYMTLKLWDVNMEARP+KTINVHEHLRPQLCNLYE+DCIFDKFECAVSG+ S V+TGSYSNMCH+Y+RYG    S+E
Sbjct:  271 VLEKPAEPSAQSFFSEIVASISDIKSTSDGRYIVSRDYMTLKLWDVNMEARPVKTINVHEHLRPQLCNLYESDCIFDKFECAVSGDASNVLTGSYSNMCHMYDRYGQAMASIE 383
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A836CB72_9STRA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB72_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.660e-45
Identity = 77/114 (67.54%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYGDKKGSLEV 342
            VLE PAD    SF+SEIVASISDIK +  GR + +RDYMTLKLWDV MEARP+K I+VHEHLRP+L +LYENDCIFDKFECA+SG  S V+TGSY+NMC +Y+ +G    SLE+
Sbjct:  286 VLEEPADPANKSFFSEIVASISDIKLSQCGRMVVARDYMTLKLWDVRMEARPVKAISVHEHLRPRLLDLYENDCIFDKFECAISGTASNVVTGSYNNMCSLYSCHGQGHASLEI 399
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A835YLG7_9STRA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLG7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.510e-45
Identity = 71/114 (62.28%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYGDKKGSLEV 342
            V++ P D +T +F+S+IVASISDIK T  G+++ +RDY+TLKLWD  MEARP+KTI VH+HLRP+LC+LYENDCIFDKFECAVSG+ + V+TGSY N+C +Y+R G  + +LE+
Sbjct:  301 VMDEPPDPHTKTFFSDIVASISDIKVTQCGQFVVARDYLTLKLWDARMEARPVKTIPVHDHLRPRLCDLYENDCIFDKFECAVSGDAATVVTGSYGNLCSMYSRAGSAQATLEI 414
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A1V9ZYZ6_9STRA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYZ6_9STRA)

HSP 1 Score: 162 bits (409), Expect = 8.300e-45
Identity = 72/100 (72.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:   19 DLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYG 318
            D  T SF+SEI+ASISDIK +PDGRYI SRDY+TLK+WDVNMEARP+ TIN+HEHLRP+LC LY+ DCIFDKFECAVSG+ +  +TGSY++  HIY+RYG
Sbjct:  281 DPATRSFFSEIIASISDIKFSPDGRYIISRDYLTLKIWDVNMEARPVHTINIHEHLRPKLCELYDTDCIFDKFECAVSGDGNNFVTGSYNSEFHIYDRYG 380
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A6G0WVX9_9STRA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVX9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.570e-44
Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYG 318
            + E   D    SF+SEI+ASISDIK +PDGRYI SRDY+TLK+WD+NMEARP++TIN+HEHLRP+LC LY+ DCIFDKFECAVSG+ +  ITGSY++  HIY+RYG
Sbjct:  293 IFEDQEDPAARSFFSEIIASISDIKFSPDGRYIISRDYLTLKIWDINMEARPVQTINIHEHLRPKLCELYDTDCIFDKFECAVSGDGNNFITGSYNSEFHIYDRYG 398
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: M4BMA0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BMA0_HYAAE)

HSP 1 Score: 153 bits (386), Expect = 2.930e-44
Identity = 69/115 (60.00%), Postives = 92/115 (80.00%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYGDKKGSLEVR 345
            V E P D    SF+SEI+ASISD++ +PDGRYI +RD++TLK+WD+NM +RP++TIN+HEHLRP+L +LYE+DCIFDKFECAVSG+ +  ITGSY++  HIY+R G    S+  R
Sbjct:   13 VFEEPEDPEARSFFSEIIASISDVRFSPDGRYIIARDFLTLKIWDINMNSRPVQTINIHEHLRPRLGDLYESDCIFDKFECAVSGDGNNFITGSYNSEFHIYDRRGRADISITPR 127
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A1V9ZML1_9STRA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZML1_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.560e-44
Identity = 71/100 (71.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:   19 DLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYG 318
            D  + SF+SEI+ASI+DIK +PDGRYI SRDY+TLK+WDVNMEARP++TIN+HEHLRP+LC LY+ DCIFDKFECAVSG+ +  ITGSY++  HIY+RYG
Sbjct:  289 DPASRSFFSEIIASIADIKFSPDGRYIISRDYLTLKIWDVNMEARPVQTINIHEHLRPRLCELYDTDCIFDKFECAVSGDGNNFITGSYNSEFHIYDRYG 388
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A485KHH9_9STRA (Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KHH9_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.090e-44
Identity = 71/106 (66.98%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYG 318
            + E   D    SF+SEI+ASISDIK +PDGRYI SRDY+TLK+WD+NME+RP++TIN+HEHLRP+LC LY+ DCIFDKFECAVSG+ +  ITGSY++  HIY+RYG
Sbjct:  290 IFEDQEDPAARSFFSEIIASISDIKFSPDGRYIISRDYLTLKIWDINMESRPVQTINIHEHLRPKLCELYDTDCIFDKFECAVSGDGNNFITGSYNSEFHIYDRYG 395
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A068SE16_9FUNG (Protein phosphatase PP2A regulatory subunit B n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SE16_9FUNG)

HSP 1 Score: 158 bits (399), Expect = 2.150e-43
Identity = 70/104 (67.31%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNR 312
            V E P D N+ SF+SEI++SISD+K + DGRYI SRDY+TLKLWD+NME +P+ TIN+H+HLR +LC+LYENDCIFDKFEC  SG+ S ++TGSYSN  HIYNR
Sbjct:  273 VFEAPEDPNSRSFFSEIISSISDVKFSRDGRYILSRDYLTLKLWDINMENKPVTTINIHDHLRNKLCDLYENDCIFDKFECTFSGDGSHMMTGSYSNNLHIYNR 376
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BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Match: A0A367KPH8_RHIST (Protein phosphatase PP2A regulatory subunit B n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KPH8_RHIST)

HSP 1 Score: 157 bits (396), Expect = 5.030e-43
Identity = 68/113 (60.18%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:    1 VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEARPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCHIYNRYGDKKGSLE 339
            V E P D +  SF+SEI++SISD+K + DGRYI SRDY+TLK+WD+NME +P++TIN+H++LRP+LC+LYENDCIFDKFEC  SG+ S ++TGSYSN  H+Y R  D   +L+
Sbjct:  265 VFEEPEDPSNRSFFSEIISSISDVKFSQDGRYILSRDYLTLKIWDINMENKPIRTINIHDNLRPKLCDLYENDCIFDKFECTFSGDGSHIMTGSYSNYIHLYGREDDTDIALQ 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18898.4714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN42_ECTSI2.690e-5880.53Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
A0A836CB72_9STRA2.660e-4567.54Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
A0A835YLG7_9STRA6.510e-4562.28Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
A0A1V9ZYZ6_9STRA8.300e-4572.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
A0A6G0WVX9_9STRA1.570e-4467.92Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
M4BMA0_HYAAE2.930e-4460.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1V9ZML1_9STRA3.560e-4471.00Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
A0A485KHH9_9STRA4.090e-4466.98Serine/threonine-protein phosphatase 2A 55 kDa reg... [more]
A0A068SE16_9FUNG2.150e-4367.31Protein phosphatase PP2A regulatory subunit B n=2 ... [more]
A0A367KPH8_RHIST5.030e-4360.18Protein phosphatase PP2A regulatory subunit B n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18898contigH-paniculata_contig18898:3288..4204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue1.7e-47
Seed eggNOG ortholog2880.D7FN42
KEGG koko:K04354
KEGG Pathwayko03015,ko04071,ko04111,ko04151,ko04152,ko04261,ko04390,ko04391,ko04530,ko04728,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04151,map04152,map04261,map04390,map04391,map04530,map04728,map05142,map05160,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000159,GO:0000278,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007049,GO:0008150,GO:0008152,GO:0008287,GO:0009987,GO:0010921,GO:0015630,GO:0016043,GO:0016311,GO:0019208,GO:0019220,GO:0019222,GO:0019538,GO:0019888,GO:0022607,GO:0030029,GO:0030036,GO:0030234,GO:0031033,GO:0031034,GO:0031323,GO:0031399,GO:0032268,GO:0032502,GO:0032991,GO:0034622,GO:0035303,GO:0035304,GO:0036211,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043666,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070262,GO:0071704,GO:0071840,GO:0080090,GO:0098772,GO:1901564,GO:1902494,GO:1903293
EggNOG free text desc.peptidyl-serine dephosphorylation
EggNOG OGsCOG5170@1,KOG1354@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Exons2
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929451.8762279-CDS-H-paniculata_contig18898:3287..35691622929451.8762279-CDS-H-paniculata_contig18898:3287..3569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18898 3288..3569 -
1691480867.2654939-CDS-H-paniculata_contig18898:3287..35691691480867.2654939-CDS-H-paniculata_contig18898:3287..3569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18898 3288..3569 -
1622929451.892464-CDS-H-paniculata_contig18898:4009..42041622929451.892464-CDS-H-paniculata_contig18898:4009..4204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18898 4010..4204 -
1691480867.2757592-CDS-H-paniculata_contig18898:4009..42041691480867.2757592-CDS-H-paniculata_contig18898:4009..4204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18898 4010..4204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18898.4714.1prot_H-paniculata_contig18898.4714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18898 3288..4204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18898.4714.1

>prot_H-paniculata_contig18898.4714.1 ID=prot_H-paniculata_contig18898.4714.1|Name=mRNA_H-paniculata_contig18898.4714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
VLELPADLNTTSFYSEIVASISDIKSTPDGRYIFSRDYMTLKLWDVNMEA
RPLKTINVHEHLRPQLCNLYENDCIFDKFECAVSGNTSRVITGSYSNMCH
IYNRYGDKKGSLEVRHRIIPSKGDVFCGVCSCLSCSSISSDRLLPSSICL
TKGELLIYW
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mRNA from alignment at H-paniculata_contig18898:3288..4204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18898.4714.1 ID=mRNA_H-paniculata_contig18898.4714.1|Name=mRNA_H-paniculata_contig18898.4714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=917bp|location=Sequence derived from alignment at H-paniculata_contig18898:3288..4204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGGAGTTACCAGCCGATCTGAACACCACGTCTTTCTATTCGGAAAT
TGTGGCGTCTATATCGGATATTAAGAGCACACCGGATGGGCGCTATATCT
TTTCAAGGGATTACATGACTCTCAAGTTGTGGGACGTTAACATGGAAGCG
CGACCTCTGAAAACAATCAACGTTCACGAACATCTACGTCCTCAGGTGTG
TAGTGTCTGCCTGCATATTAGTAGCACGAAGAGACAGAGCTGTTCTTGTG
CTTGGCATCCATGCTGTCAAAAACAAGAAGTGCAAGAGAGACGCGTTTGA
CCTTTTGTAGTCCATTATGAGATTAACGCGGCCTACCAAATACTCCACAG
CGTTGGCAGCTGCTTATATTGGCAAAATAGGCAAATTCTTTGATCCACAG
GATTGTTTCATGTGTTTGACGGACGAACATGGGGGCATGTACAGAGTGAA
ATAAACAATGGCGAATCCCCGGCCCCGCAAGTCTCTACAAATTTGAGGAT
GAGAATGCACATGAAGCCATGTGCCCCCCAAGCCATGTTCTTGTAGATAT
TTGTTCGGCTGCCCAACATGTGAGCCCTCCGACATGAATATTTTAACCGA
ATGTGACCGGTCGCCAATGTTTTCGTTTATTTCAGTTGTGCAATTTATAT
GAGAACGACTGCATTTTCGACAAGTTTGAGTGCGCCGTCAGCGGAAACAC
CAGCCGTGTGATTACAGGCTCCTACAGCAATATGTGCCACATATATAACC
GATACGGGGACAAGAAGGGTTCGCTTGAGGTAAGACATAGAATAATCCCA
AGTAAGGGTGATGTGTTTTGTGGTGTGTGTTCATGTTTATCGTGTAGCAG
TATATCGTCGGACCGTCTGCTGCCCTCATCCATTTGTCTTACCAAGGGTG
AACTACTCATCTATTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig18898:3288..4204-

>mRNA_H-paniculata_contig18898.4714.1 ID=mRNA_H-paniculata_contig18898.4714.1|Name=mRNA_H-paniculata_contig18898.4714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig18898:3288..4204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGGAGTTACCAGCCGATCTGAACACCACGTCTTTCTATTCGGAAAT
TGTGGCGTCTATATCGGATATTAAGAGCACACCGGATGGGCGCTATATCT
TTTCAAGGGATTACATGACTCTCAAGTTGTGGGACGTTAACATGGAAGCG
CGACCTCTGAAAACAATCAACGTTCACGAACATCTACGTCCTCAGGTTTT
GGAGTTACCAGCCGATCTGAACACCACGTCTTTCTATTCGGAAATTGTGG
CGTCTATATCGGATATTAAGAGCACACCGGATGGGCGCTATATCTTTTCA
AGGGATTACATGACTCTCAAGTTGTGGGACGTTAACATGGAAGCGCGACC
TCTGAAAACAATCAACGTTCACGAACATCTACGTCCTCAGTTGTGCAATT
TATATGAGAACGACTGCATTTTCGACAAGTTTGAGTGCGCCGTCAGCGGA
AACACCAGCCGTGTGATTACAGGCTCCTACAGCAATATGTGCCACATATA
TAACCGATACGGGGACAAGAAGGGTTCGCTTGAGGTAAGACATAGAATAA
TCCCAAGTAAGGGTGATGTGTTTTGTGGTGTGTGTTCATGTTTATCGTGT
AGCAGTATATCGTCGGACCGTCTGCTGCCCTCATCCATTTGTCTTACCAA
GGGTGAACTACTCATCTATTGGTTGTGCAATTTATATGAGAACGACTGCA
TTTTCGACAAGTTTGAGTGCGCCGTCAGCGGAAACACCAGCCGTGTGATT
ACAGGCTCCTACAGCAATATGTGCCACATATATAACCGATACGGGGACAA
GAAGGGTTCGCTTGAGGTAAGACATAGAATAATCCCAAGTAAGGGTGATG
TGTTTTGTGGTGTGTGTTCATGTTTATCGTGTAGCAGTATATCGTCGGAC
CGTCTGCTGCCCTCATCCATTTGTCTTACCAAGGGTGAACTACTCATCTA
TTGG
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