mRNA_H-paniculata_contig18872.4708.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18872.4708.1
Unique NamemRNA_H-paniculata_contig18872.4708.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: D7FRG3_ECTSI (PObg2, plastid Obg/CgtA-like GTPase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRG3_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 2.680e-51
Identity = 97/115 (84.35%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:    1 GVCDPEALGFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHMQHTR 345
            GVCDPEALGF G GMVLADIPGLLEGAHKGVGLGRAFLRHVER   CRAIIH+VSGAS DPVGDFRAINQELALFSEALA    VVVLNKIDLP V D+R ELE ALK HM HTR
Sbjct:  312 GVCDPEALGFKGKGMVLADIPGLLEGAHKGVGLGRAFLRHVER---CRAIIHIVSGASPDPVGDFRAINQELALFSEALA----VVVLNKIDLPEVEDRREELETALKEHMGHTR 419
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: A0A836CHG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.060e-42
Identity = 86/115 (74.78%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 GVCDPEALGFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHMQHTR 345
            GVCDP ALGF G GMVLADIPGLLEGAH+GVGLG AFLRHVER   CR IIHVVSGAS DPVGD+ AINQELALFS  LA KPQVVVLNKIDLP V   + EL E ++    HTR
Sbjct:  423 GVCDPLALGFVGRGMVLADIPGLLEGAHRGVGLGPAFLRHVER---CRLIIHVVSGASTDPVGDYVAINQELALFSADLARKPQVVVLNKIDLPEVEAIKEELLERIRERANHTR 534
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: A0A7S3XR55_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR55_HETAK)

HSP 1 Score: 148 bits (373), Expect = 9.850e-42
Identity = 80/116 (68.97%), Postives = 91/116 (78.45%), Query Frame = 1 
Query:    1 GVCDPEALGFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADK-RSELEEALKHHMQHTR 345
            GVC+P+ALGF G GMVLADIPGLLEGAHKGVGLGR FLRHV+R   C+AI+H+V G+S+DPVGDF AINQEL LF+  LA KPQVVV+ K DL  V +K  S LEE LK  M H R
Sbjct:   48 GVCEPDALGFRGRGMVLADIPGLLEGAHKGVGLGREFLRHVDR---CKAILHLVDGSSQDPVGDFTAINQELVLFNPNLAHKPQVVVITKTDLTEVREKIESGLEEDLKEKMGHGR 160
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: I2CQ94_NANGC (Gtp-binding protein obg (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ94_NANGC)

HSP 1 Score: 136 bits (342), Expect = 4.030e-39
Identity = 74/117 (63.25%), Postives = 86/117 (73.50%), Query Frame = 1 
Query:    1 GVCDPEAL------GFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHM 333
            GVCD + L      G  G G+V++DIPGLLEGAH+G+GLG AFLRH+ER   CR IIHVV G+S DPVGD  AINQEL LF+  LA KPQVV LNKIDLPHV DK  +L+ +L  HM
Sbjct:   13 GVCDGDPLDYASTGGVRGKGIVISDIPGLLEGAHRGLGLGLAFLRHIER---CRIIIHVVDGSSLDPVGDLVAINQELVLFNPILASKPQVVALNKIDLPHVRDKVPDLKASLLTHM 126
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: A0A0G4ENM0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENM0_VITBC)

HSP 1 Score: 140 bits (354), Expect = 1.310e-36
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 1 
Query:    1 GVCD-PEALGFS-GAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHMQHTR 345
            GVCD PE L    G GMVLADIPGLLEGAH+GVGLG AFLRHVER   C+ I+H+++G S DPVGDF AINQEL  F+  LA KPQVVVLNKIDLPHV ++   L+E ++  + HTR
Sbjct:  411 GVCDMPEVLSAGDGRGMVLADIPGLLEGAHRGVGLGMAFLRHVER---CKIILHIINGDSPDPVGDFHAINQELLFFNPQLAKKPQVVVLNKIDLPHVRERLPALQEEIQATLNHTR 524
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: D7FW99_ECTSI (PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW99_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 8.150e-35
Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:    1 GVCD---PEALGFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHMQHTR 345
            GVCD    EA      G+VLADIPGLLEGAH+GVGLG AFLRHV+R   CR ++H+VSG S DPVGD+RAI QEL LFS  L  K QVVVL KIDLPHV  K+ ELE  +K  + HTR
Sbjct:  311 GVCDVLGDEAEAGMDKGLVLADIPGLLEGAHEGVGLGLAFLRHVQR---CRVLVHLVSGDSVDPVGDYRAIQQELELFSPKLLKKQQVVVLTKIDLPHVRSKQKELENLIKAELDHTR 425
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: A0A835YRC8_9STRA (GTP1/OBG-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.280e-34
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:    1 GVCDPEA-LGFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHMQHTR 345
            GV +  A +G S  G+VLADIPGLLEGAH GVGLG AFLRHV+R   CR ++HVV+G S DP+GDF AI QEL LF+  LA KPQVVVLNK+DLPHVA+K++E+E  L   M H R
Sbjct:  235 GVWEESAEVGGSPKGLVLADIPGLLEGAHMGVGLGLAFLRHVQR---CRVLVHVVNGDSPDPLGDFEAIQQELELFNIKLAGKPQVVVLNKVDLPHVAEKQAEIEAGLLAMMPHKR 347
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: A0A7S0LC11_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LC11_9EUKA)

HSP 1 Score: 125 bits (315), Expect = 2.200e-34
Identity = 69/115 (60.00%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:    1 GVCDPEALGFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHMQHTR 345
            GV  PE +G  G  +V+ADIPGLLEGAH+GVGLGRAFLRHVER   C+ ++HVV G+S DPVGDF A+N EL LFS  LA KPQVVV+NK+D+P V    S L   L    +H R
Sbjct:   58 GVWRPEVVGDEG--LVIADIPGLLEGAHEGVGLGRAFLRHVER---CKMLVHVVDGSSVDPVGDFHAVNTELQLFSPWLAKKPQVVVINKLDMPEVRQGASSLAAQLVQAARHKR 167
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: A0A8J5XUT2_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XUT2_DIALT)

HSP 1 Score: 132 bits (332), Expect = 5.470e-34
Identity = 73/102 (71.57%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:   34 GAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADK----RSELEEALKH 327
            G GMVLADIPGLLEGAH GVGLGRAFLRH+ER   CR +IHVVSG S DPVGD  A+N ELALFS ALA K QVVV+NKIDLPHV ++    R+EL EA  H
Sbjct:  287 GQGMVLADIPGLLEGAHDGVGLGRAFLRHIER---CRLLIHVVSGDSPDPVGDLLAVNAELALFSPALAAKVQVVVINKIDLPHVRERLPQLRAELAEAAGH 385
[Close]
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Match: A0A0G4GVY6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVY6_9ALVE)

HSP 1 Score: 133 bits (335), Expect = 5.930e-34
Identity = 69/105 (65.71%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:   31 SGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAIIHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKRSELEEALKHHMQHTR 345
            +G G+VL DIPGL+EGAH GVGLGRAFLRH+ER   CR I+H+VSG S D VGDF AIN E+ALFS AL MKP VVV+NK+DLP V  + S+LEE LK  + H+R
Sbjct:  369 AGRGLVLLDIPGLVEGAHSGVGLGRAFLRHIER---CRVIVHIVSGDSPDVVGDFHAINSEMALFSPALMMKPHVVVINKVDLPFVRQRISKLEEQLKRVLPHSR 470
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18872.4708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRG3_ECTSI2.680e-5184.35PObg2, plastid Obg/CgtA-like GTPase 2 n=2 Tax=Ecto... [more]
A0A836CHG5_9STRA1.060e-4274.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3XR55_HETAK9.850e-4268.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
I2CQ94_NANGC4.030e-3963.25Gtp-binding protein obg (Fragment) n=1 Tax=Nannoch... [more]
A0A0G4ENM0_VITBC1.310e-3664.96Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D7FW99_ECTSI8.150e-3563.56PObg1, plastid Obg/CgtA-like GTPase 1 n=2 Tax=Ecto... [more]
A0A835YRC8_9STRA1.280e-3463.79GTP1/OBG-domain-containing protein n=1 Tax=Tribone... [more]
A0A7S0LC11_9EUKA2.200e-3460.00Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A8J5XUT2_DIALT5.470e-3471.57Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0G4GVY6_9ALVE5.930e-3465.71Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18872contigH-paniculata_contig18872:2283..4600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1.1e-43
Seed eggNOG ortholog2880.D7FRG3
KEGG koko:K03979
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009706,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019866,GO:0022414,GO:0022613,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042170,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061024,GO:0061458,GO:0071704,GO:0071840,GO:0090304,GO:1901360
EggNOG free text desc.GTP-binding protein
EggNOG OGsCOG0536@1,KOG1489@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons3
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18872.4708.1prot_H-paniculata_contig18872.4708.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18872 2283..4600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929451.0228384-CDS-H-paniculata_contig18872:2282..24191622929451.0228384-CDS-H-paniculata_contig18872:2282..2419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18872 2283..2419 +
1691480866.9731274-CDS-H-paniculata_contig18872:2282..24191691480866.9731274-CDS-H-paniculata_contig18872:2282..2419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18872 2283..2419 +
1622929451.033361-CDS-H-paniculata_contig18872:4233..43481622929451.033361-CDS-H-paniculata_contig18872:4233..4348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18872 4234..4348 +
1691480866.9828675-CDS-H-paniculata_contig18872:4233..43481691480866.9828675-CDS-H-paniculata_contig18872:4233..4348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18872 4234..4348 +
1622929451.0454333-CDS-H-paniculata_contig18872:4507..46001622929451.0454333-CDS-H-paniculata_contig18872:4507..4600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18872 4508..4600 +
1691480866.9907537-CDS-H-paniculata_contig18872:4507..46001691480866.9907537-CDS-H-paniculata_contig18872:4507..4600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18872 4508..4600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18872.4708.1

>prot_H-paniculata_contig18872.4708.1 ID=prot_H-paniculata_contig18872.4708.1|Name=mRNA_H-paniculata_contig18872.4708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
GVCDPEALGFSGAGMVLADIPGLLEGAHKGVGLGRAFLRHVERHVLCRAI
IHVVSGASRDPVGDFRAINQELALFSEALAMKPQVVVLNKIDLPHVADKR
SELEEALKHHMQHTR
back to top

mRNA from alignment at H-paniculata_contig18872:2283..4600+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18872.4708.1 ID=mRNA_H-paniculata_contig18872.4708.1|Name=mRNA_H-paniculata_contig18872.4708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2318bp|location=Sequence derived from alignment at H-paniculata_contig18872:2283..4600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTCTGTGATCCCGAGGCTCTGGGATTTAGCGGAGCGGGTATGGTGCT
TGCTGACATCCCCGGCTTGCTGGAGGGGGCGCACAAGGGCGTTGGCTTGG
GGCGTGCGTTTTTGAGACACGTTGAAAGGCATGTTCTGTTTTGGGCCATT
GTACTCTGTACTCTGTACTCTGTACGTTGTGTTTACTCTGTAATGTTCTT
CGTAGTCTACGTAAACACCGACGCTCTATCCTAATCCTATCTTTATTATC
CCTGTGATCCCTGTCTCTATGATGGCGAGTTAGGGGGAGTGTGGTGACAA
GAGACAATAATAGTAACGGTGTTCTGTAAACGGAAATGTAGACGTGCTTC
GGTGTGGAAGCATCGGACAGAGGTTTTTGCCTTAGCCTTCCGGGTGTTAA
AAAAAGAAAAGAAAAAAAGAGAGACAAGAATCACAAGGCAAAAACAAAAT
GCAACCCCGATAATTCCAAGGGCCGTTTCGGGTTCAATCAACAACTTTCC
GATTGAGCCGACGATAACATGGATTGGTTAAGATCAGATCAGGTCAGATC
AGATCAGTTGCCTTTTCCCATGAGATTTAGCGCGTTCCTGTCAGTTTGGT
GTGATTCGCTGTTGGTGATGAAATGGCACTCGCGATTTGGTCACAAAACG
CCAGACTGTTCTCCTCTCGTGGCGTGAGTGAACTAATGGACTAATATCTT
CATGCACGTATCATGCGAGTGCCCGTATAATGAATTGTGGTGATATGACC
GGAACCCAGAGCCGTTAAGAATCTTGCACCACACAACTCCAAAGTGAATG
CTTGCTGATGGCATTCCATCGGCGTTCTTGGATGAAGGTTTGAGTTATTA
ATTCCAGCTCTACGGTAATGTAGTGTAATTTCAAGCTGTGGAATGACATT
AGTATTTGAAAATACGTGTATTTGAAGAATGCCTTCAATGACCATGATTA
GCTCCTAGGTTCGTAGCTGGTTAACTTATGTTGGGTGATGCTGTGAGCTA
GTTTGTGGAGCTTGTATGTTATTTTCCACTGCACTTCGACTGGTGTTTTT
CTCCCTGTTGGTGCGGCATGTTTTGCCTGCTTCAACTAGTAGATAATACA
GTTGAGCTATTAACATGGTGAGTGACGTTTTGATTTCTGACACTATACGT
CATGTTCGCTATATTATTTACACTTGTAGCACCTTTGTACACTGCGTCGT
CAACACGTTAGTCTGTCGTAACTCTCCAAGTGTTCAGTTGCTGAGATTAT
TTATGATACACTGGCTCCTCCAATTTTACAGTGCAGTTGATTATATATTT
TTTTGTTTTGCCCTTGGCTCTTGGCGTGTTGTACCACCCGGACGACTACA
GAAAATAGTTGCCTGAGCTCCAGAATGTGCGGGTACATGGAGTAAAGTGT
TTACCCTTGCTTTTTTCTCTTTCTAGTCGTTGTTCAGAGCTGTCATAGAT
GGTCCAGGGTGCATATAATATATATATATATATATATATATATATATATT
TATTTATTTTTCTAAAACTGGTTACAAATGTTGGGTAGTCCTTACTCCGG
GGGCTTGTGCGTTTTGTATTGTATGTTCGTTTTCCAGGATTCAACGTGGA
GTGAAGACGTTCGTTGCTGTGAAGCTTTGGTAACGGTGTAGGCTAAACCG
TACCCCCACGGCTAGTCAAATGCTTGTCGGACCGATGAGAAGCAGATGGC
TCGAAGATACAGCTGATTAGGGTGGGATGCCTCACAGCAAGCACACGTGG
TGAACAAAAATGCGTCCTCCTCCAAGGGATGTATGCGTCCCCTTTTTCAT
AATTCATCATGTGTAACGGCCGATCGCCTACACACTGAATCACTCATGAG
CAACAAACGGTTTTCAGACACACAGAATCATCAATGTACGGTGTACGTCA
TCGTGCGTTGCGGGGACTACGTCATGGTTTTGTTTATCTGTCCCTTCGAA
GGTGTCGAGCTATTATTCATGTTGTGAGCGGCGCTTCCCGTGACCCTGTG
GGAGACTTCCGAGCAATCAACCAGGAGCTGGCACTATTTTCCGAGGCCCT
AGCGATGAAGCCCCAGGTATATGCCATACGGTGACACGGGGTTTAACTCG
AGCATAGGATAAGCCGCTAATCTTTTTCTTTTCCTGAGGAGCCTCTTTTG
ATGACTGCACTCGATAAAGTTACATGAGCTTTGAGACGCGCTTGTCGCAA
ACTTGTGCCTGTTGTTTCGTTTCAGGTTGTCGTTTTGAACAAAATTGACC
TACCCCACGTGGCTGACAAACGAAGCGAGCTGGAGGAGGCCCTCAAGCAC
CACATGCAGCACACCAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig18872:2283..4600+

>mRNA_H-paniculata_contig18872.4708.1 ID=mRNA_H-paniculata_contig18872.4708.1|Name=mRNA_H-paniculata_contig18872.4708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig18872:2283..4600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTCTGTGATCCCGAGGCTCTGGGATTTAGCGGAGCGGGTATGGTGCT
TGCTGACATCCCCGGCTTGCTGGAGGGGGCGCACAAGGGCGTTGGCTTGG
GGCGTGCGTTTTTGAGACACGTTGAAAGGCATGTTCTGGTGTCTGTGATC
CCGAGGCTCTGGGATTTAGCGGAGCGGGTATGGTGCTTGCTGACATCCCC
GGCTTGCTGGAGGGGGCGCACAAGGGCGTTGGCTTGGGGCGTGCGTTTTT
GAGACACGTTGAAAGGCATGTTCTGTGTCGAGCTATTATTCATGTTGTGA
GCGGCGCTTCCCGTGACCCTGTGGGAGACTTCCGAGCAATCAACCAGGAG
CTGGCACTATTTTCCGAGGCCCTAGCGATGAAGCCCCAGGTGTCGAGCTA
TTATTCATGTTGTGAGCGGCGCTTCCCGTGACCCTGTGGGAGACTTCCGA
GCAATCAACCAGGAGCTGGCACTATTTTCCGAGGCCCTAGCGATGAAGCC
CCAGGTTGTCGTTTTGAACAAAATTGACCTACCCCACGTGGCTGACAAAC
GAAGCGAGCTGGAGGAGGCCCTCAAGCACCACATGCAGCACACCAGGGTT
GTCGTTTTGAACAAAATTGACCTACCCCACGTGGCTGACAAACGAAGCGA
GCTGGAGGAGGCCCTCAAGCACCACATGCAGCACACCAGG
back to top