mRNA_H-paniculata_contig18871.4707.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18871.4707.1
Unique NamemRNA_H-paniculata_contig18871.4707.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: D8LDJ5_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 1.750e-62
Identity = 102/143 (71.33%), Postives = 119/143 (83.22%), Query Frame = 1 
Query:   16 MSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSKRFCFVYQ 444
            MSSLCGQHCINNLVQ A YSA DLA+IA ELD QER HML+ G++TPDAL+FL E+SGNVD AGNFS+QVLN AL RLYG +LVSAGSE VG +++TTGY  E AFVLNRHAHW+A+R +GGAYWDLNSMLD P++   F  +
Sbjct:    1 MSSLCGQHCINNLVQAASYSAADLADIALELDDQERQHMLAAGSDTPDALKFLAEESGNVDAAGNFSIQVLNTALKRLYGAYLVSAGSESVG-KLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALE 142
[Close]
BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A836CJ83_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ83_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.870e-56
Identity = 102/185 (55.14%), Postives = 125/185 (67.57%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSKRFCFVYQRLFLSENVVIGRRIDLRYSLFFVR---L*APPTLYPY 546
            + +KQ SSLCGQHC+NNL+Q   ++APDLA+IAH LDA+ER  ML  G +TPDAL+F  EDSGNVDEAGNFS+QVL+ AL   YGL L SAGSE V G+++TTGY  E  FV NR AHW A+R VGG YW+LNS L+ P       +   +  E  +   R+D  YS+F VR   L  P T  PY
Sbjct:    5 YHEKQESSLCGQHCLNNLLQACIFTAPDLADIAHVLDAKERQLMLELGHSTPDALKFQAEDSGNVDEAGNFSLQVLSEALTLRYGLRLESAGSERVAGKLSTTGYDSEAGFVCNRQAHWFAVRSVGGRYWNLNSTLERPE------WITSYALEATLHQYRLD-GYSVFVVRGGTLPPPSTEGPY 182
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BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A7S4DEZ6_HETAK (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEZ6_HETAK)

HSP 1 Score: 160 bits (405), Expect = 1.370e-46
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYP 417
            + +KQ S LCGQHC+NNL+QG ++ AP LA+I  ELDA+ER  ML  GA+TP+ALRFL EDSGNVDE GNFSVQVLN AL + +GL L++ G   +   I    Y +E  FV NR AHW AIR VG  +W+LNS L+ P
Sbjct:   13 YHEKQFSLLCGQHCLNNLLQGPYFDAPGLAQIGQELDAEERRVMLEAGADTPEALRFLAEDSGNVDETGNFSVQVLNTALEKSHGLTLLNTGRRELRDSIRD--YTKEEGFVCNRSAHWFAIRRVGRYWWNLNSTLERP 149
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BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A7S1U677_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U677_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.370e-38
Identity = 82/179 (45.81%), Postives = 114/179 (63.69%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSKRFCFVYQRLFLSENVVIGRRIDLRYSLFFVRL*APPTL 537
            + ++Q+++LCGQHC+NNL+ G +++   LAE+A ELDA+E   ML+ GA T DA RF+ + SGNVDEAGNFS+QVLN A++R +GL LV + SE + G+++      + AFVLN+  HWI +R  G  + DLNSM D P     F Y   FL + V  G      Y++F V    PP L
Sbjct:    8 YHERQLAALCGQHCLNNLLGGPYFTEFQLAEVAQELDAREAELMLAGGAGTEDARRFMAQPSGNVDEAGNFSIQVLNTAVSRSHGLSLVPSESEGLTGRVDADPSQFQ-AFVLNQSQHWITLRRYGDTWLDLNSMHDKPRVVSAF-YLSAFLHQLVADG------YNIFCVEGELPPPL 178
[Close]
BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A7S2SLM5_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLM5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.580e-37
Identity = 71/141 (50.35%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSK 423
            + ++Q S+LCGQHC+NNL+QG ++S  DLA+IA E+D  ER  ML  G  TP+AL+FL EDSGNVDE+GNFS+QVL  AL R + L L   G+  + GQ   +      AF+ N+  HW  +R + G YW+LNSML+ P K
Sbjct:   17 YHERQESALCGQHCLNNLLQGTYFSPGDLADIAAEMDRLERQMMLEMGDATPEALKFLAEDSGNVDESGNFSIQVLKRALERSHELVLDHVGATSLEGQDLLS----HDAFICNKSNHWFTVRKLYGLYWNLNSMLERPEK 153
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BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A7S0SUA2_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUA2_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.410e-31
Identity = 66/162 (40.74%), Postives = 98/162 (60.49%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSKRFCFVYQRLFLSENVVIGRRI 486
            + + Q SSLCGQHC+NNL+Q  ++++ DLAEIA +LDA+E  ++  +  N  +  RF+ E SGNVD +GNFS+QVL  AL  L+ + L+S  SE   G+++      E  F++N   HW  IR +   +W+LNS +  P K   F Y   FLS+ +  G  +
Sbjct:    6 YHELQESSLCGQHCLNNLLQEPYFTSIDLAEIAQQLDAKELQYLTEDNDNQMNINRFINEGSGNVDNSGNFSLQVLKEALKSLHNIDLISWTSEE--GRLDIIDPTIEEGFIINHSQHWYTIRKINDIWWNLNSTIQVPEKISPF-YLSAFLSQLINEGSSV 164
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BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A7S3T6K6_EMIHU (Ubiquitinyl hydrolase 1 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T6K6_EMIHU)

HSP 1 Score: 119 bits (297), Expect = 4.970e-29
Identity = 64/145 (44.14%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSA----GSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSK 423
            + ++Q ++LCGQHC+NNL+QG H++A DLA+IA  LD QER  ML  G  T +A  F+ EDS NVD +GNFS+QVL+ AL  ++GL L  +       L+      TG      FVLNRH+HW  +R +   +W  NS    P +
Sbjct:   22 YHERQEAALCGQHCLNNLLQGPHFTAGDLADIATALDQQERKLMLEAGM-TAEARAFMSEDSSNVDASGNFSIQVLSQALQNVFGLALEDSRRPENRSLMQSPDAQTG------FVLNRHSHWYCLRKLNNQWWSCNSTQMAPER 159
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BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A131YG56_RHIAP (Ubiquitinyl hydrolase 1 n=7 Tax=Ixodidae TaxID=6939 RepID=A0A131YG56_RHIAP)

HSP 1 Score: 116 bits (291), Expect = 1.470e-28
Identity = 64/154 (41.56%), Postives = 93/154 (60.39%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSKRFCFVYQRLFLSE 462
            F +KQ  SLC QHC+N L+QG +++A DLA IA ++D QER  M   G N+ D  RF+ + SGN+D++G FSVQV+ +AL +++GL LV   S     Q       +  A++ N   HW  IR +GG +++LNS+L  P       Y  LFL++
Sbjct:    6 FHEKQEGSLCAQHCLNGLLQGEYFTAVDLATIAQQIDEQERETMAEGGLNSDDYQRFVHQPSGNLDDSGYFSVQVIASAL-KVWGLELVPYSSTDAVAQAAQADPTQSTAYICNYKDHWFTIRKLGGRWFNLNSLLSGPQP-ISRTYLALFLAQ 157
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BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: A0A7S0Q4G8_9EUKA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4G8_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 2.510e-28
Identity = 65/142 (45.77%), Postives = 88/142 (61.97%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGS-ELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSK 423
            + ++Q S+LCGQHC+NNL+QG +++  DLAEIA ELD  E A ++SE   T D  +F+ E SGNV + GNFS+QVL  A+ R +GL+L      E  G       Y  EG FVLNRH+HW  +R +   +W LNS    P +
Sbjct:    7 YHERQQSALCGQHCLNNLLQGPYFTEVDLAEIAQELDRAELA-LMSEAGITADTRKFVSEGSGNVADDGNFSIQVLAEAVRRAHGLNLEDTRRPEARGCVAKPNDY--EG-FVLNRHSHWYCLRKLDRVWWQLNSTQPMPEQ 144
[Close]
BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Match: R1F2X8_EMIHU (Ubiquitinyl hydrolase 1 n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F2X8_EMIHU)

HSP 1 Score: 119 bits (297), Expect = 2.600e-28
Identity = 64/145 (44.14%), Postives = 88/145 (60.69%), Query Frame = 1 
Query:    1 FWQKQMSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDALRFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSA----GSELVGGQINTTGYGREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSK 423
            + ++Q ++LCGQHC+NNL+QG H++A DLA+IA  LD QER  ML  G  T +A  F+ EDS NVD +GNFS+QVL+ AL  ++GL L  +       L+      TG      FVLNRH+HW  +R +   +W  NS    P +
Sbjct:    5 YHERQEAALCGQHCLNNLLQGPHFTAGDLADIATALDQQERKLMLEAGM-TAEARAFMSEDSSNVDASGNFSIQVLSQALQNVFGLALEDSRRPENRSLMQSPDAQTG------FVLNRHSHWYCLRKLNNQWWSCNSTQMAPER 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18871.4707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ5_ECTSI1.750e-6271.33Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ83_9STRA3.870e-5655.14Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DEZ6_HETAK1.370e-4657.55Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heteros... [more]
A0A7S1U677_9STRA5.370e-3845.81Ubiquitinyl hydrolase 1 n=2 Tax=Phaeomonas parva T... [more]
A0A7S2SLM5_9STRA7.580e-3750.35Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina ma... [more]
A0A7S0SUA2_9STRA6.410e-3140.74Ubiquitinyl hydrolase 1 n=1 Tax=Chromulina nebulos... [more]
A0A7S3T6K6_EMIHU4.970e-2944.14Ubiquitinyl hydrolase 1 n=1 Tax=Emiliania huxleyi ... [more]
A0A131YG56_RHIAP1.470e-2841.56Ubiquitinyl hydrolase 1 n=7 Tax=Ixodidae TaxID=693... [more]
A0A7S0Q4G8_9EUKA2.510e-2845.77Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Coccoli... [more]
R1F2X8_EMIHU2.600e-2844.14Ubiquitinyl hydrolase 1 n=3 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18871contigH-paniculata_contig18871:3..4136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.6
Seed ortholog evalue4.5e-51
Seed eggNOG ortholog2880.D8LDJ5
Preferred nameATXN3
KEGG koko:K11863
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
EggNOG free text desc.protein localization to cytosolic proteasome complex
EggNOG OGsKOG2935@1,KOG2935@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons4
Model size680
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18871.4707.1prot_H-paniculata_contig18871.4707.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18871 161..4121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.92406-UTR-H-paniculata_contig18871:2..1601622929450.92406-UTR-H-paniculata_contig18871:2..160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18871 3..160 -
1691480866.9232624-UTR-H-paniculata_contig18871:2..1601691480866.9232624-UTR-H-paniculata_contig18871:2..160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18871 3..160 -
1622929450.9879239-UTR-H-paniculata_contig18871:4121..41361622929450.9879239-UTR-H-paniculata_contig18871:4121..4136Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18871 4122..4136 -
1691480866.9643857-UTR-H-paniculata_contig18871:4121..41361691480866.9643857-UTR-H-paniculata_contig18871:4121..4136Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18871 4122..4136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.9362469-CDS-H-paniculata_contig18871:160..3711622929450.9362469-CDS-H-paniculata_contig18871:160..371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 161..371 -
1691480866.9329214-CDS-H-paniculata_contig18871:160..3711691480866.9329214-CDS-H-paniculata_contig18871:160..371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 161..371 -
1622929450.9483545-CDS-H-paniculata_contig18871:1224..13131622929450.9483545-CDS-H-paniculata_contig18871:1224..1313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 1225..1313 -
1691480866.9405816-CDS-H-paniculata_contig18871:1224..13131691480866.9405816-CDS-H-paniculata_contig18871:1224..1313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 1225..1313 -
1622929450.9619727-CDS-H-paniculata_contig18871:1740..17951622929450.9619727-CDS-H-paniculata_contig18871:1740..1795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 1741..1795 -
1691480866.9480124-CDS-H-paniculata_contig18871:1740..17951691480866.9480124-CDS-H-paniculata_contig18871:1740..1795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 1741..1795 -
1622929450.9750576-CDS-H-paniculata_contig18871:3969..41211622929450.9750576-CDS-H-paniculata_contig18871:3969..4121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 3970..4121 -
1691480866.9562786-CDS-H-paniculata_contig18871:3969..41211691480866.9562786-CDS-H-paniculata_contig18871:3969..4121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18871 3970..4121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18871.4707.1

>prot_H-paniculata_contig18871.4707.1 ID=prot_H-paniculata_contig18871.4707.1|Name=mRNA_H-paniculata_contig18871.4707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MSSLCGQHCINNLVQGAHYSAPDLAEIAHELDAQERAHMLSEGANTPDAL
RFLGEDSGNVDEAGNFSVQVLNAALNRLYGLHLVSAGSELVGGQINTTGY
GREGAFVLNRHAHWIAIRCVGGAYWDLNSMLDYPSKRFCFVYQRLFLSEN
VVIGRRIDLRYSLFFVRL*
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mRNA from alignment at H-paniculata_contig18871:3..4136-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18871.4707.1 ID=mRNA_H-paniculata_contig18871.4707.1|Name=mRNA_H-paniculata_contig18871.4707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4134bp|location=Sequence derived from alignment at H-paniculata_contig18871:3..4136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTGGCAGAAACAAATGTCGAGCCTGTGCGGACAGCACTGCATCAACAA
CCTCGTGCAAGGAGCGCACTATTCGGCACCCGACCTCGCAGAGATAGCCC
ACGAGCTGGACGCCCAAGAAAGAGCCCACATGCTCTCGGAGGGTGCCAAC
ACCCCAGACGCCCTTAGGTGAGGTGAGATGAAGCTTGGACAGGACAGTGC
CGTGCATAGTCAGTCACTTAGTAACGAAAGATTTCCGTGTTTTTCCCAGG
GACGAAACGAGGCTACGTTGTCCAGGAGTACTGCTAGAGCCACGGGTATG
CTACCTCCATGCAATTTGCATTTTTTTTTGCCCGTTGTACCCGTTTTGTC
GAACGTCCAGAGTCATGGCCCACGCAGAAAACAGTTCGCTGCGGGATCAT
GGCCGCCTAGGTATGATGTACACGCAGATTCGTTTTTGAGGTTATTAGGA
CACAGAGTTGAAATTGTTCCGAAATTGCCATCACTGTGGTAACCCTGGCG
TGTCGTGAGTCAACATTGAAGGATTTCATGCATTCAAACATTGATGCTTG
CAATCGGTTTACCACCTAGTACACTCGTAACATGTTATATTTGTACGGTA
ACGTTAACATACATAGCGGATAGAAGTTCGGTCGTTTGAAGAGAAATATG
TTGTCATTCTTCTGTATAAATATGTCATCAGATAGTACAGGTTGATGATC
CAATCCGAGGTTGCCGAGCGTCTTTGCTTCTATTGAAACTTGACTGTTGA
AAAATTGTGGTCACCTCGGGTGTTATATATAGTGATAGACTCTTCGTGTG
AATGACTTACTGCATGATGCTTTACCAGCAAACAAGGCGGAAGCTACCAA
AATGTGATGGCAAAAAAATTGCTTCTGTGTTACGTTATCGACCCACTTGT
TTATGAATCTTGAATTTTTCACCACAAGAACAATTGTATATACAGCCAAG
TAGTACGTGGTAAGAAAGTAATAACACACCTTCGATCATAGGTATGGGCT
GTACGTTGGATCATGGCTACGTAAAGGCGCTTTGTTTTTCTTGTTATCAT
ATTAGATTTTCGATTTAGTCAAGTCCCGTCGGTCATGAAGTGGGATCCCA
CAAAATACACACTCGTAGTCTTGATCTTCCCAAAACAAACAGCAAGAGAC
GACACCGGGAGGCAACCATAAAAATACCCGAGGGAAGAGCACAATAACTG
AATATTCGAAATATACGCCATGGATTTTTAAAAGAGATCGCCTGAAGAGT
TATCATGAGCACGGTTATTAGTTATTCTATATTCTCCGGAGATACACCGT
CTATTTATCTAAGACTTCCTGAATAATGGGAGAATGAGCAATCAGCGGTG
AAAACTTCATTTTAAGTGTCCTCACATTCTTGGCCTTTGAGGCTAATTTT
GAAAAATTGCCGTCGCGAATGTTGCAAGTATGTATTTTTGTCATTCTCCA
GAACGTCCAAAGAATCGTACACTGCGTATTGTACCACCGTGCATTCGAAT
TTAATTCTAGTATATATATATATATATATATTAATATATGTTGTAGCCGA
TAGTAAGCTGTGTGGTACTGTATACTAGCGGTCGCCCCCCCTACAGATCT
GGTATCTCAACCATTTGTTTTTTAGTCATGACGGGAGTCATGTCGGTTTT
TTTTTTCTGTTGTGTCGACAAGGTGGCTGTATTTCATTTTTCGTCCACAT
GGCATGAATCATTGTTTTATATTTAATTCTTTCAGTCCATTTACAAAATG
GACGATTGGAAATTCATACGTTGCTTTTTGGGGCATTGAACAAAACAACG
CGTGACCCTGGTCGTCATCCAATTTGTGGTCATCCTAACGCTGACATATA
TAGGAGTATATCCATCGTTGAAATTTGAAAATATTTTTGTGTACTTGATT
GGATACTGGTGAACCTATGACATGATTGCTCCTGCGAGAAGTGGAGCTTT
ATAATGGTTGGGGTGATTGGTTGTGGTTTATTTCCGATCAATCTCAACCA
TATCATGTAAGCATCAAATAAAGATTTTTGCCTTAGCCTTCCGGGGGTTA
AAAAGTATATATATATATCAACCATACCGAAATTTTTCAAAAATTTGTTG
GGATTGTCACCATCACGTTAATCACGGTACTTTCCTCCCGTAACCTCGAC
TATTTTTTGCCGCCGATGACGTCAAGTGTCACCCAAAGTATATCGACCAA
TGAGATCACTCCTTTCAACAAAGTTGACCAATAGGAAAAATACGGGCACC
TCTTCCCGCACTCTGTGTAGCACATACACCCACGTGTACTCAAGTGGGTC
TGATCATCTGTTGGCGTGTGCGCTGTTCTCAATTGCTACAGGTTTTTGGG
AGAAGACTCTGGGAATGTGGATGAGGCCGGAAATTTCTCTGTTCAGGTCA
GGAGTGTGAGAGAAGAATGATATGGCGCTTCTTACGATGCCACCATCATC
AGATGCGGTTGGGTTTGGTCAGGCATGATCTAATCTAGTCTCATCTGCTA
CAGTTCCTTTTGAAGCATAAGGATAGTGATAAGGATAGCCAAGGTACCTC
AATACGTATGGCCCACCACCGTCCGTGTCCATGGGGGGCTTAGCATCTTC
ACGGGGGAGGGAGGGTGTTTCAAACCACTTTTTTTAATGAAGAGCCGTTT
TGCAAAGCGACCTGATGAGATTAAAGAACGTGTCTCAGAAACTGCTTTCT
TGTGTAAAGAGTAAAGACTACGAGCAACCAATTTTAGTCCTTTACATTAA
TTACGAATAGTATGTCGTCGTCTCTCTTTTCCTAAACCCCTCTTGGTGTG
TGTGTGTGTTTGTGTGTGTATAGGTGCTGAACGCAGCTCTAAATCGACTC
TATGGTCTTCACCTTGTATCTGCGGGCAGCGAGCTGGTCGGGGGTCAAAT
CAACACTACCGGGTATGTGAGAACAAAACACCGAGTAACGTGATGTTCAA
TGTTTTGGGGCCGTTTCCCCGCCTTTAGTGGACTTGAACCGGCATAGGTG
CCTTTCAGTTGACGTGTTACCCTAAATCTTAGTGGTGAGATATATGTCAT
TGTCCAAACCGATTTTACGAGTGTAGAAGTATTGCCATCATCTAGACCGA
TTTGACAGGTTCATTAAGCTCGAATTTCCTGACTTAATCCACCGTAGGGC
GTGAACGTTACCTAGTATGCTGTATACCATGGGGCTTTACTCTGAGGCCC
GCTCCTGCTGCGTGAAAGATTTGCGTTGCGTTGTTGTACCGGGGGTAATA
ATGTGGCTTTCATGGCTCTCGTGTCTCGTGGCAGTGGGGTGTGTGTGCAT
TAGTCTTCCTTCGTGTCTCAATTTCTGCCCACTATTTGGTCGTTGCTCCA
AAATCGTGCGTAGGGGTGCCATGTTCGCTGTTCCTGTTCATTTTCGTTTT
TCATACAAACATTTTTTTTTTTTCGGGGACAAACAAGTGACTCCCCTGTT
TGTGATTTGTTACAGCTAGAAACCACGAACCGGTACCGTTGTTGCGGAAA
TATTGTCGATTTTTCGGTATGCCACGAGACTATTAGGGTAATAGGTTTGA
ATTTACCTCTTGCGCTTTTGGGTTTTGGTTTTCGTCGTTTTCATCGGCTA
TCGCGATGTCCTATCGATGTTCGTTGCCACAAACGGCCCATGTCTATCCT
GCTGATGTTCATCACCGTAGAGTGCTTATTTATACCCTATTGATGTTCGT
CGCCTGAAGGTGCACATTTATACCCTCTTCGCGTCCATTTCCCGAACCGT
CGTACATTACTTAAGATATGGGCGCGAGGGAGCTTTCGTACTCAACAGAC
ATGCACACTGGATTGCGATCCGCTGTGTAGGGGGAGCATACTGGGACCTG
AACTCCATGCTGGACTACCCAAGTAAGAGGTTTTGTTTTGTTTACCAGCG
CTTGTTTTTGTCAGAGAATGTCGTCATTGGCAGGCGCATCGATCTTCGTT
ATTCACTGTTTTTCGTTCGACTGTAAGCACCACCGACACTATATCCATAC
CTTTTACATATTTTTTCATTTTACCCCCTGAAGAATGAAGATAAATGTTA
TTACTTTAGGCATTCGTGTGGAGAGCACGTTCCTGACGTTCCTGGGGTTC
ACGAACCCCGACCCCCTACACAAGGACCAATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig18871:3..4136-

>mRNA_H-paniculata_contig18871.4707.1 ID=mRNA_H-paniculata_contig18871.4707.1|Name=mRNA_H-paniculata_contig18871.4707.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig18871:3..4136- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGAGCCTGTGCGGACAGCACTGCATCAACAACCTCGTGCAAGGAGC
GCACTATTCGGCACCCGACCTCGCAGAGATAGCCCACGAGCTGGACGCCC
AAGAAAGAGCCCACATGCTCTCGGAGGGTGCCAACACCCCAGACGCCCTT
AGATGTCGAGCCTGTGCGGACAGCACTGCATCAACAACCTCGTGCAAGGA
GCGCACTATTCGGCACCCGACCTCGCAGAGATAGCCCACGAGCTGGACGC
CCAAGAAAGAGCCCACATGCTCTCGGAGGGTGCCAACACCCCAGACGCCC
TTAGGTTTTTGGGAGAAGACTCTGGGAATGTGGATGAGGCCGGAAATTTC
TCTGTTCAGGTTTTTGGGAGAAGACTCTGGGAATGTGGATGAGGCCGGAA
ATTTCTCTGTTCAGGTGCTGAACGCAGCTCTAAATCGACTCTATGGTCTT
CACCTTGTATCTGCGGGCAGCGAGCTGGTCGGGGGTCAAATCAACACTAC
CGGGTGCTGAACGCAGCTCTAAATCGACTCTATGGTCTTCACCTTGTATC
TGCGGGCAGCGAGCTGGTCGGGGGTCAAATCAACACTACCGGATATGGGC
GCGAGGGAGCTTTCGTACTCAACAGACATGCACACTGGATTGCGATCCGC
TGTGTAGGGGGAGCATACTGGGACCTGAACTCCATGCTGGACTACCCAAG
TAAGAGGTTTTGTTTTGTTTACCAGCGCTTGTTTTTGTCAGAGAATGTCG
TCATTGGCAGGCGCATCGATCTTCGTTATTCACTGTTTTTCGTTCGACTG
TAAATATGGGCGCGAGGGAGCTTTCGTACTCAACAGACATGCACACTGGA
TTGCGATCCGCTGTGTAGGGGGAGCATACTGGGACCTGAACTCCATGCTG
GACTACCCAAGTAAGAGGTTTTGTTTTGTTTACCAGCGCTTGTTTTTGTC
AGAGAATGTCGTCATTGGCAGGCGCATCGATCTTCGTTATTCACTGTTTT
TCGTTCGACTGTAA
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