mRNA_H-paniculata_contig18851.4705.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18851.4705.1
Unique NamemRNA_H-paniculata_contig18851.4705.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18851.4705.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.050e-9
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = -1 
Query:  142 FVAARQLGVKRGDLQEAVMALCSDNRPAPWDLAVAPDRRRLDLFFKRHPRLVEYSNRIYEADRMMDEEAP 351
            F A   L V R  L++AV  LC+D R  PWD    P +  L  F +RHPR+ E S RIYEA+R+ ++E P
Sbjct:   72 FAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEP 141
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BLAST of mRNA_H-paniculata_contig18851.4705.1 vs. uniprot
Match: A0A6H5KJ62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ62_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.180e-9
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = -1 
Query:  142 VAARQ-LGVKRGDLQEAVMALCSDNRPAPWDLAVAPDRRRLDLFFKRHPRLVEYSNRIYEADRMMDEEAP 348
            VAAR  L V R  L++AV  LC+D R  PWD    P +  L  F +RHPR+ E S RIYEA+R+ ++E P
Sbjct:   72 VAARNFLAVDRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLGGFLRRHPRVAERSTRIYEANRITEDEEP 141
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BLAST of mRNA_H-paniculata_contig18851.4705.1 vs. uniprot
Match: A0A6H5KNQ5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.880e-9
Identity = 39/99 (39.39%), Postives = 49/99 (49.49%), Query Frame = -1 
Query:   55 FVAARQLGVKRGDLQEAVMALCSDNRPAPWDLAVAPDRRRLDLFFKRHPRLVEYSNRIYEADRMMDEEAPP*KNSMRPGRPTRARITQQPTTYGTPTRQ 351
            F A   L V R  L +AV  LC D R  PWD    P +  L  F +RHPR+ E S RIYEA+R+ ++E P              R  ++PTT    TRQ
Sbjct:   51 FAARNFLAVDRLHLGDAVRQLCDDGRRIPWDPEKVPGKDWLAGFLRRHPRVAERSTRIYEANRITEDEEPHMVQFYERWAALSTRSNRRPTTCTIRTRQ 149
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BLAST of mRNA_H-paniculata_contig18851.4705.1 vs. uniprot
Match: A0A6H5K4M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.300e-9
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = -1 
Query:  142 FVAARQLGVKRGDLQEAVMALCSDNRPAPWDLAVAPDRRRLDLFFKRHPRLVEYSNRIYEADRMMDEEAP 351
            F A   L V R  L++AV  LC+D R  PWD    P +  L  F +RHPR+ E S RIYEA+R+ ++E P
Sbjct:   51 FAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEP 120
[Close]
BLAST of mRNA_H-paniculata_contig18851.4705.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.860e-9
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = -1 
Query:  142 FVAARQLGVKRGDLQEAVMALCSDNRPAPWDLAVAPDRRRLDLFFKRHPRLVEYSNRIYEADRMMDEEAP 351
            F A   L V R  L++AV  LC+D R  PWD    P +  L  F +RHPR+ E S RIYEA+R+ ++E P
Sbjct:   72 FAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEP 141
[Close]
BLAST of mRNA_H-paniculata_contig18851.4705.1 vs. uniprot
Match: A0A6H5L2E0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.230e-8
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = -1 
Query:  142 FVAARQLGVKRGDLQEAVMALCSDNRPAPWDLAVAPDRRRLDLFFKRHPRLVEYSNRIYEADRMMDEEAP 351
            F A   L V R  L++AV  LC+D R   WD    P +  L  F +RHPR+ E S RIYEA+RM ++E P
Sbjct:   51 FAARNFLAVDRVHLRDAVRRLCNDGRRIIWDPDEGPGKDWLAGFLRRHPRVAERSTRIYEANRMTEDEEP 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18851.4705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRY4_9PHAE1.050e-945.71HTH psq-type domain-containing protein n=4 Tax=Ect... [more]
A0A6H5KJ62_9PHAE1.180e-948.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ5_9PHAE1.880e-939.39DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K4M5_9PHAE4.300e-945.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFM5_9PHAE4.860e-945.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2E0_9PHAE1.230e-845.71DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18851contigH-paniculata_contig18851:3422..3811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.6414852-CDS-H-paniculata_contig18851:3421..38111622929450.6414852-CDS-H-paniculata_contig18851:3421..3811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18851 3422..3811 +
1691480866.7737868-CDS-H-paniculata_contig18851:3421..38111691480866.7737868-CDS-H-paniculata_contig18851:3421..3811Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18851 3422..3811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18851.4705.1prot_H-paniculata_contig18851.4705.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18851 3422..3811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18851.4705.1

>prot_H-paniculata_contig18851.4705.1 ID=prot_H-paniculata_contig18851.4705.1|Name=mRNA_H-paniculata_contig18851.4705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
CITSRQCNGSHGLYTVYHLPRRCSIRGRLLGYPCPRRPAWPHRILSWGGL
FIHHPVRLVDAVAILHQPRMPLEEQVESSSVRGNSQVPRSWSVVAAECHD
RLLQVTSFHAQLSSCNKRMEILKVPTATR*
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mRNA from alignment at H-paniculata_contig18851:3422..3811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18851.4705.1 ID=mRNA_H-paniculata_contig18851.4705.1|Name=mRNA_H-paniculata_contig18851.4705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig18851:3422..3811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCATCACCTCACGTCAGTGCAATGGCTCTCACGGACTGTATACCGTATA
CCACCTGCCTCGTCGGTGTTCCATACGTGGTCGGTTGCTGGGTTATCCTT
GCCCGCGTAGGCCTGCCTGGCCGCATAGAATTCTTTCATGGGGGGGCCTC
TTCATCCATCATCCTGTCCGCCTCGTAGATGCGGTTGCTATACTCCACCA
GCCGCGGATGCCTCTTGAAGAACAAGTCGAGTCGTCTTCGGTCAGGGGCA
ACAGCCAGGTCCCACGGAGCTGGTCGGTTGTCGCTGCAGAGTGCCATGAC
CGCCTCTTGCAGGTCACCTCTTTTCACGCCCAGTTGTCGAGCTGCAACAA
ACGAATGGAGATACTGAAGGTACCTACAGCAACACGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig18851:3422..3811+

>mRNA_H-paniculata_contig18851.4705.1 ID=mRNA_H-paniculata_contig18851.4705.1|Name=mRNA_H-paniculata_contig18851.4705.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig18851:3422..3811+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCATCACCTCACGTCAGTGCAATGGCTCTCACGGACTGTATACCGTATA
CCACCTGCCTCGTCGGTGTTCCATACGTGGTCGGTTGCTGGGTTATCCTT
GCCCGCGTAGGCCTGCCTGGCCGCATAGAATTCTTTCATGGGGGGGCCTC
TTCATCCATCATCCTGTCCGCCTCGTAGATGCGGTTGCTATACTCCACCA
GCCGCGGATGCCTCTTGAAGAACAAGTCGAGTCGTCTTCGGTCAGGGGCA
ACAGCCAGGTCCCACGGAGCTGGTCGGTTGTCGCTGCAGAGTGCCATGAC
CGCCTCTTGCAGGTCACCTCTTTTCACGCCCAGTTGTCGAGCTGCAACAA
ACGAATGGAGATACTGAAGGTACCTACAGCAACACGGTAGTGCATCACCT
CACGTCAGTGCAATGGCTCTCACGGACTGTATACCGTATACCACCTGCCT
CGTCGGTGTTCCATACGTGGTCGGTTGCTGGGTTATCCTTGCCCGCGTAG
GCCTGCCTGGCCGCATAGAATTCTTTCATGGGGGGGCCTCTTCATCCATC
ATCCTGTCCGCCTCGTAGATGCGGTTGCTATACTCCACCAGCCGCGGATG
CCTCTTGAAGAACAAGTCGAGTCGTCTTCGGTCAGGGGCAACAGCCAGGT
CCCACGGAGCTGGTCGGTTGTCGCTGCAGAGTGCCATGACCGCCTCTTGC
AGGTCACCTCTTTTCACGCCCAGTTGTCGAGCTGCAACAAACGAATGGAG
ATACTGAAGGTACCTACAGCAACACGGTAG
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