mRNA_H-paniculata_contig18842.4700.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18842.4700.1
Unique NamemRNA_H-paniculata_contig18842.4700.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18842.4700.1 vs. uniprot
Match: D7FXM5_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM5_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 7.180e-53
Identity = 83/107 (77.57%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:    6 RYQSVFIPEEELRRQVPPEVFDQLRRIWHVDKDGLVATPMDFTATVSYINFLNHSDQPNLSFRYSDGAYVTSRAVTRGEELCISYDRDYYPGYTAAFRARENAGSEV 326
            +Y SVFIP EELR +VP EVFDQLRRIWHVD+ G VATP+DFT+T+SYINFLNHSDQPNLSFRYSDG YVTSR V RGEEL I+YDRDYYPGYTA FRARE++  + 
Sbjct:   58 KYASVFIPGEELRERVPKEVFDQLRRIWHVDQHGQVATPLDFTSTLSYINFLNHSDQPNLSFRYSDGGYVTSRTVARGEELFINYDRDYYPGYTAGFRARESSAGDT 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18842.4700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXM5_ECTSI7.180e-5377.57SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18842contigH-paniculata_contig18842:2715..4587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-28_002300.1
Exons3
Model size918
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18842.4700.1prot_H-paniculata_contig18842.4700.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18842 3220..4198 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.9940383-UTR-H-paniculata_contig18842:2714..32191622929449.9940383-UTR-H-paniculata_contig18842:2714..3219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18842 2715..3219 -
1691480866.4496174-UTR-H-paniculata_contig18842:2714..32191691480866.4496174-UTR-H-paniculata_contig18842:2714..3219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18842 2715..3219 -
1622929450.0315273-UTR-H-paniculata_contig18842:4198..42411622929450.0315273-UTR-H-paniculata_contig18842:4198..4241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18842 4199..4241 -
1691480866.4828007-UTR-H-paniculata_contig18842:4198..42411691480866.4828007-UTR-H-paniculata_contig18842:4198..4241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18842 4199..4241 -
1622929450.043477-UTR-H-paniculata_contig18842:4508..45871622929450.043477-UTR-H-paniculata_contig18842:4508..4587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18842 4509..4587 -
1691480866.497573-UTR-H-paniculata_contig18842:4508..45871691480866.497573-UTR-H-paniculata_contig18842:4508..4587Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18842 4509..4587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929450.0078273-CDS-H-paniculata_contig18842:3219..34561622929450.0078273-CDS-H-paniculata_contig18842:3219..3456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18842 3220..3456 -
1691480866.4621065-CDS-H-paniculata_contig18842:3219..34561691480866.4621065-CDS-H-paniculata_contig18842:3219..3456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18842 3220..3456 -
1622929450.0197122-CDS-H-paniculata_contig18842:4144..41981622929450.0197122-CDS-H-paniculata_contig18842:4144..4198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18842 4145..4198 -
1691480866.4733562-CDS-H-paniculata_contig18842:4144..41981691480866.4733562-CDS-H-paniculata_contig18842:4144..4198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18842 4145..4198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18842.4700.1

>prot_H-paniculata_contig18842.4700.1 ID=prot_H-paniculata_contig18842.4700.1|Name=mRNA_H-paniculata_contig18842.4700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MDFTATVSYINFLNHSDQPNLSFRYSDGAYVTSRAVTRGEELCISYDRDY
YPGYTAAFRARENAGSEVEDDTRARPQNPAVPLVADGMDSKCPPRK*
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mRNA from alignment at H-paniculata_contig18842:2715..4587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18842.4700.1 ID=mRNA_H-paniculata_contig18842.4700.1|Name=mRNA_H-paniculata_contig18842.4700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1873bp|location=Sequence derived from alignment at H-paniculata_contig18842:2715..4587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAAGATATCAGAGCGTATTTATCCCGGAAGAGGAGCTGCGAAGACAA
GTTCCTCCTGAAGTTTTCGACCAGCTCCGGTGAGCGGGCGGGGGAGGCGT
TTTCTTCCAGAGATAATGGTCACCCGCATCCCATCGTGTGGTGGTACGTT
TTTTGCGAGATGTGGCACGAGGTGAAGTTTGCATTGCTTCTTAACAGGTT
CATCGGGGTCCTAGCCTGTTACGCAAAGTTCCCAAGTCGTATTTACGCTT
CACTAGATATGTGATGCGTCCGCCCTCCCGCCCCCCTCCGCCGCCGCCGC
CACCGTACGCACGCGATTCCTTTCGCCATTTTCGTGATCCACGCAGCCGA
ATCTGGCATGTGGATAAGGATGGACTGGTGGCTACACCGATGGATTTCAC
GGCTACCGTCAGCTATATCAACTTTCTCAACCACTCCGATCAGGCATGAT
TATCACATCACCACTCGGTAACGGTTGGTCACGAGTATTTATGTATCTAA
TACGATGTAGTGCCGGCAGTCGCGCTCAGCAGTCCGTGCTGGGGGCTGAA
GTGGTCAATTATGTTGACTGAACAGCAATGAAAAGATAGAACGGTAGTAC
GTACATTACATACTAAGCAAGACGTAATAAATGCCCCCAAAAGTTCTCGT
CTACTTCATGCAGCGTTGCAAGCTAAGGGTTGGTCCTTCCTAGCAGGCGC
GTTTTTTGGCGTAAAAAACAGGACTTTGTCAGTTGTTAGATTTTCGAGGC
TTGAAAATAAAAAGCGATTTTTTTGCTAACATATGTGTGTGTGTGTGTGT
GTGTGTGTGTTTTACTTCTGTAGAAAAACTTGAAACAATGGATGACAGTT
CTGTTGGATAAATTTTGGCTCGTGTTTGAAAGGTAGACAATCGCAAAATT
GACAAATTTCCGTTTTTACTCCAAAAAAATGCACCTGCAAGGAATGACCC
CAACTTCGCAGTGTCGTCTTCTATCTCGACATATACACCGTCGTGAAACG
TACTATCTTGTTTTTGTCTTTTGTTTACGAAGGACGTTATTGCCCATTGA
CCAGCCCGCGACCTTTGTGGTCTTCCGAAACACTTAGCCCCTACCGACCG
TCGACAGCCTCCCCTTGTTGTCCTTTGCCAGCCAAACTTGTCGTTTCGAT
ACTCAGACGGGGCTTACGTGACTTCGAGAGCGGTGACGCGCGGCGAGGAG
CTTTGCATCAGCTACGACCGAGATTACTACCCCGGGTACACAGCCGCTTT
TCGTGCCAGGGAAAATGCCGGGAGCGAAGTGGAAGATGACACGCGAGCAC
GACCACAAAACCCGGCAGTCCCACTTGTTGCAGATGGAATGGACAGCAAA
TGCCCACCACGAAAATAATGAAAAACGTGGCTTTTTTGGAGTTGGAGAAT
AGAGTGTGCCCAAGACAAAGTTCTATTAGTGAAAAGGGCCAATAATCACG
GCTGCGGGTATGGAGAGTGGCCTGCAGTGCGGTTGGAGAACACGCCTTCC
GTAGGTGAAGTGGCTTGCAGTGGTGGTTGGAACCGGACCGACCAATCAAT
TTCCAACCTTTTTCGTTGTTTTGGTTTTCCTTGAAGGATTGTTCGTTTGT
TCTTTTCCCTACCACTTCGCTTTGCTGTTGTAAGAAGGCGTTTCTTTCAC
ACTCTTTGCACGAACTGTGAACATGCAGGAAAGGGGGCGGGCTTGATACC
AGACGGATGCTCGCAGATCCGCGTACGTTCTGCTTTCTATCCCAGCGAGC
AGTGGTGAGAATTGGGCCATGGAATTACATTTTGTTGTAGGAAGAATATC
AATAACCACTCATCTGAACGTTCTACACCTTAAAAGGTAATGATACGGTA
GTTGGGGTGAGGCTGTACGGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18842:2715..4587-

>mRNA_H-paniculata_contig18842.4700.1 ID=mRNA_H-paniculata_contig18842.4700.1|Name=mRNA_H-paniculata_contig18842.4700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig18842:2715..4587- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTCACGGCTACCGTCAGCTATATCAACTTTCTCAACCACTCCGA
TCAGATGGATTTCACGGCTACCGTCAGCTATATCAACTTTCTCAACCACT
CCGATCAGCCAAACTTGTCGTTTCGATACTCAGACGGGGCTTACGTGACT
TCGAGAGCGGTGACGCGCGGCGAGGAGCTTTGCATCAGCTACGACCGAGA
TTACTACCCCGGGTACACAGCCGCTTTTCGTGCCAGGGAAAATGCCGGGA
GCGAAGTGGAAGATGACACGCGAGCACGACCACAAAACCCGGCAGTCCCA
CTTGTTGCAGATGGAATGGACAGCAAATGCCCACCACGAAAATAACCAAA
CTTGTCGTTTCGATACTCAGACGGGGCTTACGTGACTTCGAGAGCGGTGA
CGCGCGGCGAGGAGCTTTGCATCAGCTACGACCGAGATTACTACCCCGGG
TACACAGCCGCTTTTCGTGCCAGGGAAAATGCCGGGAGCGAAGTGGAAGA
TGACACGCGAGCACGACCACAAAACCCGGCAGTCCCACTTGTTGCAGATG
GAATGGACAGCAAATGCCCACCACGAAAATAA
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