mRNA_H-paniculata_contig1884.4699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1884.4699.1
Unique NamemRNA_H-paniculata_contig1884.4699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 3.510e-89
Identity = 142/264 (53.79%), Postives = 184/264 (69.70%), Query Frame = 2
Query:  251 SSFAVTAGFVGMLA-AGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGD-QGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDD 1036
            +S    AG +G      T AL+V  P++  +VV+   Y + W+G S D RFEIDL YCGSYSYCF+ E +CGF + N+C  GD  GC S AD + +   PEPL G S+ GYR+R+A+VG  S+  RCS+DFYL+SS D P  G  GGP++ VV+PTAD++A+AG  YT+EFDYDNGFG  +GRFKID+Y    + +   GDCG W++SVCDKPD+GC DS GDY+VV+P  +  G YKIRVGLFGDD +YACS +FE+V    D
Sbjct:    6 ASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFE-EAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVG--SDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLY--KALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 5.560e-87
Identity = 134/250 (53.60%), Postives = 172/250 (68.80%), Query Frame = 2
Query:  269 AGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEI 1018
            AG +G     T AL+V  P++  SV +   Y + W G   D RFE+DL YCGSYS+CF +  DCGF + N+C   D  C    D + +   PEP+ G S+NGYRVR+++VG  ++  RCSEDFYLV+S DV   G  GGP+M VV+P A+++AVAG  YT+EFDYDNGFG  +GRFKID+Y          GDCG W++SVCDKPD+GC+DS GDYDVV+P  +  G YKIRVGLFGDD++YACS +FEI
Sbjct:   12 AGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEG-----NGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEI 254          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 1.890e-85
Identity = 133/261 (50.96%), Postives = 181/261 (69.35%), Query Frame = 2
Query:  239 KMTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIV 1021
            K + +  A   G +G +   T AL+V  P++  +VV++  Y + W G S D RFEIDL YCGSYS+CF++  +CGF V NLC  GD  C +  D   +  +PEP+DG S++GYRVR+ +VG  +E  RCS++FYL+SS D     +  GP+M VV+P++ ++AVAG  YT+EFDYDNGFG+  GRFKID+Y          GDCG W+SSVCDKPD+GC D+ GDYD+V+P+ +  G YKIRVGLFGDD+V+ACS +FE+V
Sbjct:    2 KSSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADA---SDQDGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGT-----GDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVV 252          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 3.340e-72
Identity = 133/266 (50.00%), Postives = 172/266 (64.66%), Query Frame = 2
Query:  242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMY-AQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDD 1036
            MTR+ F   A   GML A   ALKV+ PS G++V+A+  Y +EW+G S D RFEIDL YCGS   C +D  DCG  V  LC  G+ GC  D +G Y+ +MPEP+ G S +GY+VR+  + +  E   CS++FYL++S + P  G+  GP++ V SP +  +A    EYT+EFDYDNG GS+V RF ID+Y A  E      GDCG ++ S+CDKP IGCKDS GDYDV +P  T  G YKIRV  F DD++Y+CS  F I E GDD
Sbjct:    1 MTRTGFVALA--CGMLGAAN-ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSM--CMED--DCGDWVTALCPYGEDGC-PDNEGDYDIVMPEPMLGTSGSGYKVRVWDI-HDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGE------GDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEE-GDD 250          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.520e-69
Identity = 125/265 (47.17%), Postives = 167/265 (63.02%), Query Frame = 2
Query:  242 MTRSSF-AVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGD 1033
            M R+ F A+  G +G+ +A    L+V  P+ G  VV++  Y +EWSG   + RFEIDL YC S   C +DE  CG  V  LC  G+ GC  D +G Y+ +MPEP+ G S +GY+VR+A V    +   CS++FYL++  D P   + GGP + V SP+    A AG EYT+EFDYDNG GS+VGRF ID+YA +       GDCG ++ ++CDKP IGCKDS GDYDV +P+    G Y IRVG F D++VY CS+ FEI+   D
Sbjct:    2 MVRTGFVALACGMLGVASA----LEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSM--CMEDE--CGEWVTALCPYGEDGC-PDNEGDYDIVMPEPMSGTSGSGYKVRVADVD-DEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATG-----SGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADD 251          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 1.410e-68
Identity = 119/243 (48.97%), Postives = 159/243 (65.43%), Query Frame = 2
Query:  305 ALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGD 1033
            AL+V  P+ G  VVA+  Y +EW+G   + R+EIDL YCGS   C +DE  CG  V  LC  G+ GC  D +G Y+ +MPEP+ G S +GY+VR+A V    +   CS++FYL++  + P  G+ GGP + V SP++   A AG EYT+EFDYDNG GS+VGRF ID+Y+ +       GDCG ++ ++CDKP IGCKDS GDYDV +P+    G Y IRVG F DD+VY CS+ FEI+   D
Sbjct:    7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSM--CMEDE--CGDWVTALCPYGEDGC-PDNEGDYDIVMPEPMSGTSGSGYKVRVADVD-DDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATG-----SGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 2.060e-66
Identity = 128/260 (49.23%), Postives = 166/260 (63.85%), Query Frame = 2
Query:  242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIV 1021
            M R++FA  A   GML A   AL+V  P+ G  VVA+S Y +EW+G +   R++IDL YCGS   C +DE  CG  V  LC  GD GC  D  G Y+ +MPEP+DG SS GY+V +      S+   CS DF L++S + P   + G   ++V SP+    A+AG EYT+EFDYDNG GS+V RF ID+Y+         GDCG +++++CDKP IGCKDS GDYDVV+P  T  G Y IRVG+F DD VY CS++FEIV
Sbjct:    1 MARTAFAALA--FGMLGAAN-ALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSV--CMEDE--CGDWVTALCPYGDDGC-PDTQGDYDVVMPEPMDGTSS-GYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGG-----SGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 6.710e-65
Identity = 126/265 (47.55%), Postives = 163/265 (61.51%), Query Frame = 2
Query:  242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDD 1036
            M R+ F   A    ML A   AL+V  PS  + VVA+  Y +EW+G +D  RFEIDL +CGS   C +D   CG  V  LC  G++GC  D +G Y+ +MPEP+ G S++GY+VR+  V    + + CS+ FYL++S+D P  G+  G  + V SP     A AG EYT+EFDYDNG GS V RF ID+Y          GDCG +++S+CDKP IGCKDS GDYDV +P  T  G YKIRVG F D+ +Y CS  F I+  GDD
Sbjct:    1 MARTGFVALA--CAMLGAAN-ALEVVTPSADLIVVADRTYTVEWTG-ADSGRFEIDLYHCGSM--CMEDS--CGDWVTALCPYGEEGC-PDNEGDYDIVMPEPMSGESNSGYKVRVMDVS-DEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGD-----GDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMG-GDD 249          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 221 bits (564), Expect = 6.580e-64
Identity = 126/266 (47.37%), Postives = 165/266 (62.03%), Query Frame = 2
Query:  242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDDL 1039
            M R++FA  A   GML A   AL+V  P+ G+SV+A+  Y +EW+G SD +RFEIDL YCGS+  C +DE  CG  V  LC  G  GC  D  G Y+ +MPEP+ G SS GY+V +      S  + CS DF LV+S D P  G  G  S+ V SP+    A+AG  YT+E+DY+NG GS+  RF ID+Y+         GDCG +++++CDKP IGC DS GDYDV +P  T  G Y +RVG+F DD ++ CSE FEIV    D+
Sbjct:    1 MARTAFAALA--FGMLGAAN-ALEVVSPAAGISVIADRTYTVEWTGTSD-SRFEIDLYYCGSF--CMEDE--CGDWVTALCPYGADGC-PDTQGDYDIVMPEPMAGTSS-GYKVVVTDSNDESS-MGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGT----GDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDM 250          
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.440e-60
Identity = 121/266 (45.49%), Postives = 166/266 (62.41%), Query Frame = 2
Query:  242 MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDDARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALMPEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPSMAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMMGDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAVYACSEAFEIVEMGDDL 1039
            M R++FA  A   GML+A   AL+V  P  G+SV+A+  Y +EW+G +   RFEIDL YC S+  C DD   CG  V  LC  G  GC  D+ G Y+ +MPEP+ G SS GY+V +      S+ + CS+DF L++S+D P  G  G  S+ V SP+    A+AG  YT+E+DY+NGFGS+  RF +D+Y          GDCG +++++CD+P IGC DS GDYDV +P  T  G Y IRVG+F D+ +Y CS+ FE V+  DD+
Sbjct:    1 MARTAFAAVA--FGMLSAAN-ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSF--CMDDV--CGDWVTALCPYGADGC-PDSAGDYDIIMPEPMSGTSS-GYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGT-----GDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFE-VDTSDDM 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1884.4699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LEQ9_ECTSI3.510e-8953.79EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5KPZ5_9PHAE5.560e-8753.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FN59_ECTSI1.890e-8550.96EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JRG9_9PHAE3.340e-7250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE1.520e-6947.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI1.410e-6848.97EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI2.060e-6649.23Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FYL2_ECTSI6.710e-6547.55EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G3F0_ECTSI6.580e-6447.37EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE1.440e-6045.49GPI-anchored domain-containing protein n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1884contigH-paniculata_contig1884:16241..20166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size2038
Cds size807
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.8902304-UTR-H-paniculata_contig1884:16240..164811622929449.8902304-UTR-H-paniculata_contig1884:16240..16481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 16241..16481 +
1691480866.373207-UTR-H-paniculata_contig1884:16240..164811691480866.373207-UTR-H-paniculata_contig1884:16240..16481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 16241..16481 +
1622929449.963729-UTR-H-paniculata_contig1884:19176..201661622929449.963729-UTR-H-paniculata_contig1884:19176..20166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 19177..20166 +
1691480866.4390712-UTR-H-paniculata_contig1884:19176..201661691480866.4390712-UTR-H-paniculata_contig1884:19176..20166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1884 19177..20166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.902962-CDS-H-paniculata_contig1884:16481..165941622929449.902962-CDS-H-paniculata_contig1884:16481..16594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 16482..16594 +
1691480866.3858151-CDS-H-paniculata_contig1884:16481..165941691480866.3858151-CDS-H-paniculata_contig1884:16481..16594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 16482..16594 +
1622929449.9169767-CDS-H-paniculata_contig1884:17423..175141622929449.9169767-CDS-H-paniculata_contig1884:17423..17514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 17424..17514 +
1691480866.3962772-CDS-H-paniculata_contig1884:17423..175141691480866.3962772-CDS-H-paniculata_contig1884:17423..17514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 17424..17514 +
1622929449.9261386-CDS-H-paniculata_contig1884:17773..180821622929449.9261386-CDS-H-paniculata_contig1884:17773..18082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 17774..18082 +
1691480866.4095466-CDS-H-paniculata_contig1884:17773..180821691480866.4095466-CDS-H-paniculata_contig1884:17773..18082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 17774..18082 +
1622929449.9404416-CDS-H-paniculata_contig1884:18348..184991622929449.9404416-CDS-H-paniculata_contig1884:18348..18499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 18349..18499 +
1691480866.4201944-CDS-H-paniculata_contig1884:18348..184991691480866.4201944-CDS-H-paniculata_contig1884:18348..18499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 18349..18499 +
1622929449.9530659-CDS-H-paniculata_contig1884:19033..191761622929449.9530659-CDS-H-paniculata_contig1884:19033..19176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 19034..19176 +
1691480866.4293504-CDS-H-paniculata_contig1884:19033..191761691480866.4293504-CDS-H-paniculata_contig1884:19033..19176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1884 19034..19176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1884.4699.1prot_H-paniculata_contig1884.4699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1884 16482..19176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1884.4699.1

>prot_H-paniculata_contig1884.4699.1 ID=prot_H-paniculata_contig1884.4699.1|Name=mRNA_H-paniculata_contig1884.4699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MTRSSFAVTAGFVGMLAAGTTALKVTQPSLGMSVVANSLYPIEWSGVSDD
ARFEIDLTYCGSYSYCFDDEGDCGFLVENLCTNGDQGCGSDADGAYEALM
PEPLDGVSSNGYRVRLAQVGYGSERIRCSEDFYLVSSQDVPLPGNTGGPS
MAVVSPTADSIAVAGNEYTIEFDYDNGFGSTVGRFKIDMYAQSEVEDMMM
GDCGFWISSVCDKPDIGCKDSTGDYDVVLPQTTSPGFYKIRVGLFGDDAV
YACSEAFEIVEMGDDLWA*
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mRNA from alignment at H-paniculata_contig1884:16241..20166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1884.4699.1 ID=mRNA_H-paniculata_contig1884.4699.1|Name=mRNA_H-paniculata_contig1884.4699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3926bp|location=Sequence derived from alignment at H-paniculata_contig1884:16241..20166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACATACATCGTTCGTCCGCACACCTGCCCGCCCCCTCCAAACACTCA CATCTTACACCACTGACTTCGACACAACGCCTTATCAGTAAATCTGCAGA GCAACAGACGAACCTGTTTATAACAGCTAGACAGAAACAGCAAAGGGTCA GGTGGGATCTTCTCTGCTCAGAGACAACGGTGACTAGCCACCTTTTCTGT CAACAGCTTCTTCTCATTTCTTCTTCTGCTTTGTGAAAAAGATGACTCGC TCAAGCTTCGCGGTGACAGCTGGCTTTGTCGGTATGCTGGCAGCCGGGAC TACTGCACTGAAGGTTACTCAACCTTCGCTGGGCATGTCTGTGGTTGCTA ATAGGTGAGCATCCTATTCTTACTTTTGCGCAGCGCTCGGCGTGATTGTC ATAGGCGTCTGTCTCTCTGGTCGCTCTGTTTGCACCAAAAATGATCTCAA AAGAGTCTTGAATCTTGAGTTACCACTTATTCCGAGGATCCAAAAGTCCA TAGACTATTTAGTAGACTGATTGCGGGCTGTCGTCACTCTCTGCTAAGGC TTCGGTAGCGTGACAAGTCCCAGACAACTGTCGCGTTCACCATATTTCAT ACCTGATCGACCAAGCACATTTTTACGTTGCCGCTGGCCATTATTCCAGC ACTTTTCCTGACGTCGTAGTGGTGCACTTGTGGTAGCATGTTGGAAAAAG AGCTGTTCGAGAAGAGTGGTGTAACAATTTCGTCAAATGGTTGGTTGCCT TTGTTTTTGAAGGCCAGTCTGTCTGATGTCCAAACTTGGGTGCTTTCAGC GACCTTGGTTCAATCTGGCTTGGTAGGCAGCGAGTAGCTCTAGGCTCTTT CAGGCTCGACCTAACTGTTTTTCAACATTGGGTTATGAAAAAAGTTCGGG TCCAGCCTTACGCGCAACAGCAGATGATGTTTAGACTCTCGTGTCATTTT TCTCAATCACCAGCAATCCACAATCCCAGCGTATTGTGTGGTCTGCGTGG GTTGTACCAGTAGCTCCACCGTATGAAGTTATGGGTTATGTTAGATGTGA GAAGTATTCTGTATGACAAGTTGATTGTCCGTTCGAGAGCTGACGCGTAG GTTGGCCGTATTTTGCATTTTTTTCCCCTTGACCCTGTCCGTTGCCCTCA CTAAATTGTGCGTCTTTGAATGTATGGTCGCAGCCTCTACCCCATCGAAT GGAGTGGAGTCTCGGATGACGCCCGGTTTGAGATTGACCTGACCTACTGT GGCTCCTACTCATATTGTTTCGATGTGAGTAATCGGTATTAGCTAAGACA AGTGTATTAGGTGTAGAAAATGACGTACTGCCAATATTTGATATACAATT TTGACCGCGAAAAATCGGTTTTCCTCTTATACCAACCGCAGCCCCGCAGT GACCATAAGCCACTGCCGTGGTGGTCTTATCCTTCGCGAAGACCATAAAC GTTGCTTCCCGTATACCGGCTATCCCTGTTCCCCTATACTCAACATATCT GCTGCTTGTGCCCAAACCTCGACCAATCCTCAGGATGAAGGAGATTGTGG TTTCCTGGTCGAGAACCTGTGCACGAATGGCGACCAGGGATGTGGGAGTG ATGCTGATGGGGCTTATGAAGCCTTGATGCCAGAGCCATTGGACGGTGTA TCCAGCAACGGATATAGGGTGCGACTTGCGCAGGTTGGATATGGTTCAGA AAGGATTCGCTGCTCAGAAGACTTCTACCTCGTGTCAAGCCAGGATGTGC CCTTGCCAGGGAACACCGGAGGGCCGTCGATGGCAGTTGTATCTCCCACA GCTGACTCAATTGCGGTTGCCGGGAACGAGTATACCATAGAGGTGAGGGT AAGGAAAGTGAGGTGAATCGATAGGATATTTCATGTGAATGAGGAGACGG ACCACCAGTGGTTGTGCATATTTTGAGTGTATCACCCCACTCATGGTGTG ATACAAAAGAGGTGCCCTGTGGAGTTTAGGGATTTCTGGTACAGTACTGC GACAATTTCTTGACCACTCGCTCGCACGTGCGTTTTCGCTGCATTATAGG GCACACCTCCTTGTCCCTTACCTATCGCAACCTGTTGTGGATTTTACGTT GCCTACAGTTTGACTACGACAACGGTTTCGGAAGCACGGTGGGGCGTTTC AAGATAGATATGTACGCCCAGTCTGAGGTCGAAGACATGATGATGGGTGA CTGCGGGTTCTGGATCAGTTCCGTTTGCGACAAGCCGGACATCGGTTGCA AAGACAGCAGTGAGTGTTTTCTACTTTTGGATAGTCGCTTACAGGAATTC TGTAGGAATCCTTGATTGAATTCAAAAGATACATGTGTGTCGCTGGAACT GCCGTGTTACTATCTATTTGTTTCTCTGGGCTTACCCCGATGTGCATTTT TCTGCGATTGAAATCGCCCATCATACTCGTAGCTTCGGTCCGGCGGACAC CCGTCCCCGCCAGTCAGCACCGAACTTCGGTCGAGCATGAGAGACTGGGT GTTGCCTGCTTTCCTTAGTCTATTTTCAACATTCAAATAAATTGTGGTTC TCTTTGCGCTCGAATTTTACTAGAAGCTTGTTCCAGGATCGAAATGGAAA ATGAAGAAAACTGTCGTTGAGATGGATACGAATGTCCCTCGCTTGTTTTT CCTGCAATTAATATCTTCACAGCCGAAGTCTCCCCGGAGCTTGTTTTGGC TGGTATGTCCCGAAGAGCAAGTATCCCATGCCCTAACACACCTTCCCCCA CACGTTTTGAACATTTGGTTTCATATGCTTGTGGATGGTGCAGCCGGAGA CTACGACGTCGTCCTACCCCAAACCACCTCACCTGGCTTCTACAAGATTC GCGTGGGTCTATTTGGTGATGATGCGGTGTACGCGTGCTCGGAAGCTTTC GAAATAGTGGAAATGGGAGACGACCTATGGGCTTAACCTGTGGTCATGGC ACCATTTAAATGCTGTGATTATTGTCATTGGTTGTTTTATCCACGGCACT GCACTTTTTGTTCGGATGTGTGTATGACACGGTCATGAGCGATTGTCATT CCCCGCTTTTGAGATTGAGTGTGACGGCGCGTTAGAGTTCGTCCTGCCCC CTCTTTCACGTGCAGTAATTTCAACTGCTGGTTTTAAGGTCCCAACCCTT GGGTATTTGGGCCAAGAAATTACTCGGGTGGGGAAGGAGAGATTATAGTC GTCCCGTTGGATTTGGATGATTGCTGCAATTCGAGCTTTCTGTCGGAGTT TTGGAGTTTGTGTGTACTTGTGTGCGCCATGTGCGCGAACGCTAGGCGTG CCTCGGGATTTTCATCTATGGTGATTCCCGACAACTTTGAACGTGCGAGT TTTGTGTATGAAATCTTGCGTTGTAATCTAGAATCAATTTTGGTCTGTTT TGTCTTCTTTTTTTTTTCTTGACCGCTTCTTGGTCAAATCGCAATAGTTC GGGATAAAGTTCAGGACTGTATTCCTGTTGGCCCCTTAGATTGGTCACAT GGTTGGTTTAGCGCTATTCAGTCTCTTCAAACGACTGGCAGTATGCAACG GTTATGTACACGGATCGTGGATATACGTTGGGGTTTTGTTTGTTGATGTG CTTCTGGGATAGAAGATTGATGTTTCGTTTGTTCCTCGGGTTCATAACCT GGGATAGGGTGTAAAAACAGTGGAATAGTGAAGATGTCATTCTGGATGGT GGAGGGTGGATGTGACGGTCGAAGATGAACGTTCACGTGAATATGTGCAC CTCTAGATTATGCATGTTGACTGGTGTAACAAAGTGAATAAATTTGTGAA ACAAACGAATCGTCCTTTCGTTGGGAGAAGATCAGTAAGCTGAAAATGGT TCGTGTACTATACCGACCCCTGTTTCATTGAATATACTCATGTCCACCTC ATATCATTATAGTATGGTGCAATATG
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Coding sequence (CDS) from alignment at H-paniculata_contig1884:16241..20166+

>mRNA_H-paniculata_contig1884.4699.1 ID=mRNA_H-paniculata_contig1884.4699.1|Name=mRNA_H-paniculata_contig1884.4699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig1884:16241..20166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCGCTCAAGCTTCGCGGTGACAGCTGGCTTTGTCGGTATGCTGGC
AGCCGGGACTACTGCACTGAAGGTTACTCAACCTTCGCTGGGCATGTCTG
TGGTTGCTAATAGATGACTCGCTCAAGCTTCGCGGTGACAGCTGGCTTTG
TCGGTATGCTGGCAGCCGGGACTACTGCACTGAAGGTTACTCAACCTTCG
CTGGGCATGTCTGTGGTTGCTAATAGCCTCTACCCCATCGAATGGAGTGG
AGTCTCGGATGACGCCCGGTTTGAGATTGACCTGACCTACTGTGGCTCCT
ACTCATATTGTTTCGATCCTCTACCCCATCGAATGGAGTGGAGTCTCGGA
TGACGCCCGGTTTGAGATTGACCTGACCTACTGTGGCTCCTACTCATATT
GTTTCGATGATGAAGGAGATTGTGGTTTCCTGGTCGAGAACCTGTGCACG
AATGGCGACCAGGGATGTGGGAGTGATGCTGATGGGGCTTATGAAGCCTT
GATGCCAGAGCCATTGGACGGTGTATCCAGCAACGGATATAGGGTGCGAC
TTGCGCAGGTTGGATATGGTTCAGAAAGGATTCGCTGCTCAGAAGACTTC
TACCTCGTGTCAAGCCAGGATGTGCCCTTGCCAGGGAACACCGGAGGGCC
GTCGATGGCAGTTGTATCTCCCACAGCTGACTCAATTGCGGTTGCCGGGA
ACGAGTATACCATAGAGGATGAAGGAGATTGTGGTTTCCTGGTCGAGAAC
CTGTGCACGAATGGCGACCAGGGATGTGGGAGTGATGCTGATGGGGCTTA
TGAAGCCTTGATGCCAGAGCCATTGGACGGTGTATCCAGCAACGGATATA
GGGTGCGACTTGCGCAGGTTGGATATGGTTCAGAAAGGATTCGCTGCTCA
GAAGACTTCTACCTCGTGTCAAGCCAGGATGTGCCCTTGCCAGGGAACAC
CGGAGGGCCGTCGATGGCAGTTGTATCTCCCACAGCTGACTCAATTGCGG
TTGCCGGGAACGAGTATACCATAGAGTTTGACTACGACAACGGTTTCGGA
AGCACGGTGGGGCGTTTCAAGATAGATATGTACGCCCAGTCTGAGGTCGA
AGACATGATGATGGGTGACTGCGGGTTCTGGATCAGTTCCGTTTGCGACA
AGCCGGACATCGGTTGCAAAGACAGCATTTGACTACGACAACGGTTTCGG
AAGCACGGTGGGGCGTTTCAAGATAGATATGTACGCCCAGTCTGAGGTCG
AAGACATGATGATGGGTGACTGCGGGTTCTGGATCAGTTCCGTTTGCGAC
AAGCCGGACATCGGTTGCAAAGACAGCACCGGAGACTACGACGTCGTCCT
ACCCCAAACCACCTCACCTGGCTTCTACAAGATTCGCGTGGGTCTATTTG
GTGATGATGCGGTGTACGCGTGCTCGGAAGCTTTCGAAATAGTGGAAATG
GGAGACGACCTATGGGCTTAACCGGAGACTACGACGTCGTCCTACCCCAA
ACCACCTCACCTGGCTTCTACAAGATTCGCGTGGGTCTATTTGGTGATGA
TGCGGTGTACGCGTGCTCGGAAGCTTTCGAAATAGTGGAAATGGGAGACG
ACCTATGGGCTTAA
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