mRNA_H-paniculata_contig18826.4690.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18826.4690.1
Unique NamemRNA_H-paniculata_contig18826.4690.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18826.4690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18826contigH-paniculata_contig18826:3536..3893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size359
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929448.4720235-UTR-H-paniculata_contig18826:3535..35811622929448.4720235-UTR-H-paniculata_contig18826:3535..3581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18826 3536..3581 +
1691480865.6518364-UTR-H-paniculata_contig18826:3535..35811691480865.6518364-UTR-H-paniculata_contig18826:3535..3581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18826 3536..3581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929448.4828768-CDS-H-paniculata_contig18826:3581..38931622929448.4828768-CDS-H-paniculata_contig18826:3581..3893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18826 3582..3893 +
1691480865.6625814-CDS-H-paniculata_contig18826:3581..38931691480865.6625814-CDS-H-paniculata_contig18826:3581..3893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18826 3582..3893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18826.4690.1prot_H-paniculata_contig18826.4690.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18826 3582..3893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18826.4690.1

>prot_H-paniculata_contig18826.4690.1 ID=prot_H-paniculata_contig18826.4690.1|Name=mRNA_H-paniculata_contig18826.4690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MTDRHAHPQFCPLAVYIAAQFSRTLRLNPVIGRGRDWLTTSARYFCIKLS
NVQVNLRSKAPIYSTLCNIVVLVYRTNSAQCTSTITARAASTIYPRNLLF
RSIS
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mRNA from alignment at H-paniculata_contig18826:3536..3893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18826.4690.1 ID=mRNA_H-paniculata_contig18826.4690.1|Name=mRNA_H-paniculata_contig18826.4690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=358bp|location=Sequence derived from alignment at H-paniculata_contig18826:3536..3893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAGATAAAAGTGTTACATTATCACAAGGAAACTGTATTAAAAAATGA
CAGATCGACACGCACACCCACAATTTTGCCCTTTAGCTGTATACATAGCA
GCACAGTTTTCGAGGACGTTGAGATTGAACCCTGTCATCGGTCGAGGTAG
AGATTGGTTGACAACTAGCGCGCGTTATTTTTGCATAAAATTGTCAAATG
TGCAAGTAAATTTGAGATCCAAAGCTCCCATCTATTCTACCTTGTGCAAC
ATAGTCGTACTGGTGTATCGAACTAACAGTGCCCAGTGCACATCAACAAT
CACGGCGAGGGCCGCGTCCACTATCTATCCCAGAAACCTCTTGTTTAGAT
CAATTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig18826:3536..3893+

>mRNA_H-paniculata_contig18826.4690.1 ID=mRNA_H-paniculata_contig18826.4690.1|Name=mRNA_H-paniculata_contig18826.4690.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig18826:3536..3893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGATCGACACGCACACCCACAATTTTGCCCTTTAGCTGTATACAT
AGCAGCACAGTTTTCGAGGACGTTGAGATTGAACCCTGTCATCGGTCGAG
GTAGAGATTGGTTGACAACTAGCGCGCGTTATTTTTGCATAAAATTGTCA
AATGTGCAAGTAAATTTGAGATCCAAAGCTCCCATCTATTCTACCTTGTG
CAACATAGTCGTACTGGTGTATCGAACTAACAGTGCCCAGTGCACATCAA
CAATCACGGCGAGGGCCGCGTCCACTATCTATCCCAGAAACCTCTTGTTT
AGATCAATTAGCATGACAGATCGACACGCACACCCACAATTTTGCCCTTT
AGCTGTATACATAGCAGCACAGTTTTCGAGGACGTTGAGATTGAACCCTG
TCATCGGTCGAGGTAGAGATTGGTTGACAACTAGCGCGCGTTATTTTTGC
ATAAAATTGTCAAATGTGCAAGTAAATTTGAGATCCAAAGCTCCCATCTA
TTCTACCTTGTGCAACATAGTCGTACTGGTGTATCGAACTAACAGTGCCC
AGTGCACATCAACAATCACGGCGAGGGCCGCGTCCACTATCTATCCCAGA
AACCTCTTGTTTAGATCAATTAGC
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