prot_H-paniculata_contig18825.4688.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig18825.4688.1
Unique Name	prot_H-paniculata_contig18825.4688.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	99

Homology

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.370e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 93
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  222 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 313

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.460e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 93
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  427 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 518

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.470e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 93
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  491 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 582

[Close]

BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.470e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 93
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  635 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 726

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.530e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 93
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  841 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 932

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.520e-22
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 93
            +K+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  155 AKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 246

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5JJC4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.060e-18
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 93
            S +A IW+K+M    E L  A TF+   + P  CNV+D++W YKW  D  G  ++AK+R+V KG+ Q+  +DY   F+PTA A S RLL  +
Sbjct:   24 SMHAVIWDKAMSEAFEGLLRAGTFALAVKAPISCNVIDARWVYKWISDETGKTEKAKARLVAKGFEQKHGVDYLETFSPTANAASIRLLVAL 115

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.310e-16
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 0

Query:    2 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQR 69
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I + K+R+V KG+ Q+
Sbjct:  817 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARLVAKGFRQK 884

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5L6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.010e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 0

Query:    4 YADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLL 90
            +AD    + +S+ E LAA        ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+
Sbjct:  199 FADFSTAARESD-EALAA--------KLPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLV 276

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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A5N6PAJ3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PAJ3_9ASTR)

HSP 1 Score: 74.7 bits (182), Expect = 1.560e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 0

Query:    8 WNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLL 90
            W  +M  E   L    T+S VP VP G NVVD KW YK K DPQG I R K+R+  KG+ Q++ IDY   F+P   A + RL+
Sbjct:  482 WRHAMAEEYSALMRNGTWSLVPRVP-GSNVVDCKWVYKIKRDPQGHIQRYKARLCAKGFRQQQGIDYADTFSPVVKATTIRLV 563

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JV80_9PHAE	5.370e-23	47.83	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5LDZ0_9PHAE	5.460e-23	47.83	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5J594_9PHAE	5.470e-23	47.83	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KHE8_9PHAE	5.470e-23	47.83	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K622_9PHAE	5.530e-23	47.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JP36_9PHAE	3.520e-22	46.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JJC4_9PHAE	3.060e-18	43.48	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JH25_9PHAE	4.310e-16	48.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6C0_9PHAE	3.010e-14	43.68	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A5N6PAJ3_9ASTR	1.560e-13	46.99	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 29..92 e-value: 5.7E-8 score: 32.7
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..82
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 6..82

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig18825	contig	H-paniculata_contig18825:4400..4696 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig18825.4688.1	mRNA_H-paniculata_contig18825.4688.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig18825 4400..4696 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig18825.4688.1 ID=prot_H-paniculata_contig18825.4688.1|Name=mRNA_H-paniculata_contig18825.4688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
ASKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDP
QGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVILRLLD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like