mRNA_H-paniculata_contig18825.4688.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18825.4688.1
Unique NamemRNA_H-paniculata_contig18825.4688.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.370e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 279
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  222 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 313
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.460e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 279
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  427 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 518
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.470e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 279
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  491 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 582
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.470e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 279
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  635 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 726
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.530e-23
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 279
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  841 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 932
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.520e-22
Identity = 43/92 (46.74%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVI 279
            +K+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+  +
Sbjct:  155 AKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVAL 246
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.310e-16
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    4 SKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQR 207
            SK+A IW+K+M +E+E L  A TF+   ++PEGCNV+D++W +KWK D  G I + K+R+V KG+ Q+
Sbjct:  817 SKHATIWDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKTKARLVAKGFRQK 884
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A6H5L6C0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.010e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   10 YADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLL 270
            +AD    + +S+ E LAA        ++PEGCNV+D++W +KWK D  G I +AK+R+V KG+ Q+  +DY   F+PTA A S RL+
Sbjct:  199 FADFSTAARESD-EALAA--------KLPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLV 276
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A5N6PAJ3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PAJ3_9ASTR)

HSP 1 Score: 74.7 bits (182), Expect = 1.560e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   22 WNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLL 270
            W  +M  E   L    T+S VP VP G NVVD KW YK K DPQG I R K+R+  KG+ Q++ IDY   F+P   A + RL+
Sbjct:  482 WRHAMAEEYSALMRNGTWSLVPRVP-GSNVVDCKWVYKIKRDPQGHIQRYKARLCAKGFRQQQGIDYADTFSPVVKATTIRLV 563
[Close]
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Match: A0A5N6LF10_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LF10_9ASTR)

HSP 1 Score: 74.7 bits (182), Expect = 1.580e-13
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   22 WNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDPQGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLL 270
            W  +M  E   L    T+S VP VP G NVVD KW YK K DPQG I R K+R+  KG+ Q++ IDY   F+P   A + RL+
Sbjct:  599 WRHAMAEEYSALMRNGTWSLVPRVP-GSNVVDCKWVYKIKRDPQGHIQRYKARLCAKGFRQQQGIDYADTFSPVVKATTIRLV 680
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18825.4688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV80_9PHAE5.370e-2347.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE5.460e-2347.83CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE5.470e-2347.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE5.470e-2347.83CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE5.530e-2347.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE3.520e-2246.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE4.310e-1648.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6C0_9PHAE3.010e-1443.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PAJ3_9ASTR1.560e-1346.99Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6LF10_9ASTR1.580e-1346.99Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18825contigH-paniculata_contig18825:4400..4696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.4
Seed ortholog evalue4.1e-12
Seed eggNOG ortholog4558.Sb07g003556.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929448.4270144-CDS-H-paniculata_contig18825:4399..46961622929448.4270144-CDS-H-paniculata_contig18825:4399..4696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18825 4400..4696 +
1691480865.6399796-CDS-H-paniculata_contig18825:4399..46961691480865.6399796-CDS-H-paniculata_contig18825:4399..4696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18825 4400..4696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18825.4688.1prot_H-paniculata_contig18825.4688.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18825 4400..4696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18825.4688.1

>prot_H-paniculata_contig18825.4688.1 ID=prot_H-paniculata_contig18825.4688.1|Name=mRNA_H-paniculata_contig18825.4688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
ASKYADIWNKSMDSELEVLAAARTFSKVPEVPEGCNVVDSKWGYKWKCDP
QGMIDRAKSRMVEKGYGQREDIDYHANFAPTALAPSNRLLAVILRLLD*
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mRNA from alignment at H-paniculata_contig18825:4400..4696+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18825.4688.1 ID=mRNA_H-paniculata_contig18825.4688.1|Name=mRNA_H-paniculata_contig18825.4688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig18825:4400..4696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCGAAGTACGCCGACATTTGGAACAAGTCGATGGATTCAGAGCTTGA
GGTACTTGCAGCAGCAAGAACCTTTTCTAAAGTACCAGAGGTACCAGAGG
GATGCAATGTTGTGGATTCGAAGTGGGGGTACAAGTGGAAGTGTGATCCA
CAGGGCATGATTGATAGAGCAAAATCTAGAATGGTGGAGAAGGGATACGG
CCAGCGAGAAGATATCGACTACCATGCGAACTTCGCTCCTACAGCGTTGG
CACCGTCCAACAGACTTTTGGCGGTGATCCTACGCTTGCTTGACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig18825:4400..4696+

>mRNA_H-paniculata_contig18825.4688.1 ID=mRNA_H-paniculata_contig18825.4688.1|Name=mRNA_H-paniculata_contig18825.4688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig18825:4400..4696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCGAAGTACGCCGACATTTGGAACAAGTCGATGGATTCAGAGCTTGA
GGTACTTGCAGCAGCAAGAACCTTTTCTAAAGTACCAGAGGTACCAGAGG
GATGCAATGTTGTGGATTCGAAGTGGGGGTACAAGTGGAAGTGTGATCCA
CAGGGCATGATTGATAGAGCAAAATCTAGAATGGTGGAGAAGGGATACGG
CCAGCGAGAAGATATCGACTACCATGCGAACTTCGCTCCTACAGCGTTGG
CACCGTCCAACAGACTTTTGGCGGTGATCCTACGCTTGCTTGACTGAGCC
TCGAAGTACGCCGACATTTGGAACAAGTCGATGGATTCAGAGCTTGAGGT
ACTTGCAGCAGCAAGAACCTTTTCTAAAGTACCAGAGGTACCAGAGGGAT
GCAATGTTGTGGATTCGAAGTGGGGGTACAAGTGGAAGTGTGATCCACAG
GGCATGATTGATAGAGCAAAATCTAGAATGGTGGAGAAGGGATACGGCCA
GCGAGAAGATATCGACTACCATGCGAACTTCGCTCCTACAGCGTTGGCAC
CGTCCAACAGACTTTTGGCGGTGATCCTACGCTTGCTTGACTGA
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