mRNA_H-paniculata_contig1882.4684.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1882.4684.1
Unique NamemRNA_H-paniculata_contig1882.4684.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: B8BV57_THAPS (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BV57_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 1.130e-16
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RI+ AGGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:   57 EKERIIAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 97
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: A0A7S2W7E2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W7E2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.000e-16
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RIL AGGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:  137 EKERILAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 177
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: F0XW26_AURAN (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW26_AURAN)

HSP 1 Score: 77.4 bits (189), Expect = 2.520e-16
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K RIL AGGRVF+VEY DGVDGPPRVWLG+MD+PGLAMSR
Sbjct:  113 EKARILGAGGRVFAVEYDDGVDGPPRVWLGHMDVPGLAMSR 153
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: A0A1Z5J9I2_FISSO (PPM-type phosphatase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J9I2_FISSO)

HSP 1 Score: 79.0 bits (193), Expect = 2.930e-16
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RIL  GGRVF+VEY DG+DGPPRVWLGNMD+PGLAMSR
Sbjct:  209 EKERILACGGRVFAVEYDDGIDGPPRVWLGNMDIPGLAMSR 249
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: A0A7S2W6R9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6R9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.340e-16
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RIL AGGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:  220 EKERILAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 260
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: A0A7S2A7W6_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7W6_TRICV)

HSP 1 Score: 78.6 bits (192), Expect = 4.860e-16
Identity = 33/41 (80.49%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RIL AGGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:  240 EKERILAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 280
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: K0SMM4_THAOC (PPM-type phosphatase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SMM4_THAOC)

HSP 1 Score: 77.8 bits (190), Expect = 7.100e-16
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RI+ AGGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:  195 EKERIIAAGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 235
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: A0A1E7EUC1_9STRA (Protein serine/threonine phosphatase 2C (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUC1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.570e-16
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RIL  GGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:  146 EKERILATGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 186
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: A0A7S1D593_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D593_CYCTE)

HSP 1 Score: 77.0 bits (188), Expect = 9.360e-16
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RIL  GGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:  154 EKERILACGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 194
[Close]
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Match: A0A7S0BX79_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX79_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.100e-15
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR 123
            +K+RIL +GGRVF+VEY DG+DGPPRVWLG+MD+PGLAMSR
Sbjct:  212 EKERILASGGRVFAVEYDDGIDGPPRVWLGHMDVPGLAMSR 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1882.4684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8BV57_THAPS1.130e-1678.05PPM-type phosphatase domain-containing protein (Fr... [more]
A0A7S2W7E2_9STRA2.000e-1680.49Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
F0XW26_AURAN2.520e-1682.93PPM-type phosphatase domain-containing protein (Fr... [more]
A0A1Z5J9I2_FISSO2.930e-1680.49PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S2W6R9_9STRA4.340e-1680.49Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2A7W6_TRICV4.860e-1680.49Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
K0SMM4_THAOC7.100e-1678.05PPM-type phosphatase domain-containing protein n=1... [more]
A0A1E7EUC1_9STRA8.570e-1678.05Protein serine/threonine phosphatase 2C (Fragment)... [more]
A0A7S1D593_CYCTE9.360e-1678.05Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0BX79_9STRA1.100e-1578.05Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1882contigH-paniculata_contig1882:483..608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue7.9e-13
Seed eggNOG ortholog159749.K0SMM4
KEGG koko:K04403,ko:K14803
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Serine/threonine phosphatases, family 2C, catalytic domain
EggNOG OGs2XAGP@2836,COG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929448.093812-CDS-H-paniculata_contig1882:482..6081622929448.093812-CDS-H-paniculata_contig1882:482..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1882 483..608 -
1691480865.5034285-CDS-H-paniculata_contig1882:482..6081691480865.5034285-CDS-H-paniculata_contig1882:482..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1882 483..608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1882.4684.1prot_H-paniculata_contig1882.4684.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1882 483..608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1882.4684.1

>prot_H-paniculata_contig1882.4684.1 ID=prot_H-paniculata_contig1882.4684.1|Name=mRNA_H-paniculata_contig1882.4684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
QKQRILRAGGRVFSVEYADGVDGPPRVWLGNMDMPGLAMSR*
back to top

mRNA from alignment at H-paniculata_contig1882:483..608-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1882.4684.1 ID=mRNA_H-paniculata_contig1882.4684.1|Name=mRNA_H-paniculata_contig1882.4684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at H-paniculata_contig1882:483..608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAACAACGCATACTGAGAGCCGGAGGACGTGTGTTTTCGGTGGAATA
CGCGGATGGAGTTGATGGCCCACCGAGAGTGTGGCTGGGTAACATGGACA
TGCCGGGATTAGCCATGTCCAGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1882:483..608-

>mRNA_H-paniculata_contig1882.4684.1 ID=mRNA_H-paniculata_contig1882.4684.1|Name=mRNA_H-paniculata_contig1882.4684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig1882:483..608- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAACAACGCATACTGAGAGCCGGAGGACGTGTGTTTTCGGTGGAATA
CGCGGATGGAGTTGATGGCCCACCGAGAGTGTGGCTGGGTAACATGGACA
TGCCGGGATTAGCCATGTCCAGGTAACAGAAACAACGCATACTGAGAGCC
GGAGGACGTGTGTTTTCGGTGGAATACGCGGATGGAGTTGATGGCCCACC
GAGAGTGTGGCTGGGTAACATGGACATGCCGGGATTAGCCATGTCCAGGT
AA
back to top