mRNA_H-paniculata_contig18814.4683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.080e-24 Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALGWS 396
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+GERR I + + QGDG+G LFC + I+ K R ++ LG S
Sbjct: 101 KPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVS 232
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 109 bits (273), Expect = 3.740e-23 Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+GERR I + + QGDG+G LFC + I+ K R ++ LG
Sbjct: 100 KPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLG 229
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 108 bits (271), Expect = 7.840e-23 Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+GERR I + + QGDG+G LFC + I+ K R ++ LG
Sbjct: 490 KPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 619
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 108 bits (271), Expect = 8.580e-23 Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+GERR I + + QGDG+G LFC + I+ K R ++ LG
Sbjct: 469 KPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 598
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 108 bits (271), Expect = 9.470e-23 Identity = 52/130 (40.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + VAV+GG + + A+ HQ G+W+I DC+NAFN+ KR AI+ + A P L ++A+ Y + A V++MD+GERR + + + QGDG+G LF + + I+ K +D++K LG
Sbjct: 639 KPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLG 768
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.860e-22 Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + + P L ++A+ Y + A ++ MD+GERR I + + QGDG+G LFC + I+ K R ++ LG
Sbjct: 468 KPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 597
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 105 bits (263), Expect = 3.050e-22 Identity = 51/130 (39.23%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+G RR I + QGDG+G LFC + I+ K R ++ LG
Sbjct: 191 KPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLG 320
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 107 bits (266), Expect = 3.480e-22 Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+GE R I + + QGDG+G LFC + I+ K R ++ LG
Sbjct: 476 KPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 605
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 106 bits (264), Expect = 5.960e-22 Identity = 51/130 (39.23%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALG 390
+PKLEE+ + AV GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+GERR I + + QGDG+G LFC + I+ K R ++ LG
Sbjct: 16 KPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 145
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE) HSP 1 Score: 105 bits (261), Expect = 7.200e-22 Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1
Query: 1 RPKLEEVNLSER*YVVAVSGGAKLMGFHAKAHHQFGHWLIALDCTNAFNSIKRAAILEEVAIRTPGLTPFVAKYYGQKLADIVFQMDTGERRRITSNTEIYQGDGLGSALFCMPMGAILCKCRDQFKALGWS 396
+PKLEE+ + VAV+GG + + A+ HQ GHW++ DC+NAFN+ KR AI+ + A P L ++A+ Y + A ++ MD+GERR I + + QGDG+G LF + I+ K R ++ LG S
Sbjct: 57 KPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFILFPIVLKLRAKYDHLGVS 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18814.4683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18814.4683.1 >prot_H-paniculata_contig18814.4683.1 ID=prot_H-paniculata_contig18814.4683.1|Name=mRNA_H-paniculata_contig18814.4683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp MGRSWQTSFSRWTPVNAGESPRTRKSTRATDLDQPSSACPWERSCASAEIback to top mRNA from alignment at H-paniculata_contig18814:2278..3173+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18814.4683.1 ID=mRNA_H-paniculata_contig18814.4683.1|Name=mRNA_H-paniculata_contig18814.4683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=896bp|location=Sequence derived from alignment at H-paniculata_contig18814:2278..3173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18814:2278..3173+ >mRNA_H-paniculata_contig18814.4683.1 ID=mRNA_H-paniculata_contig18814.4683.1|Name=mRNA_H-paniculata_contig18814.4683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig18814:2278..3173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |